Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004157

Physical Location & Seq

Genomic Coordinates Forward (+)

13308644 .. 13308913

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTTTTATGAGGGAAACAAGTTTGAGACGAAATCAGTAGCAAGCGTCAATGGTAAAAAGTTATCGTTTTTACGAAACGGCACAGTGACAGGGGCGGGTTTATTGCCACAAGTTTCCGATCACACTACAGGTAATGCCATTCGCCCATTGCCACAAAGGAAAAGACCATATTTTGATATCTATAAGGTAATTGGAAGAAATAAATTTTTTCCATTAATTGCTGAAGTCTCAGAAATTCGAGTTTGTTTTCCCATTTTACTGACTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

90

Amino Acids

10.02

Weight (kDa)

10.01

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34830
fragaria_vesca	FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240
malus_domestica	MD05G1113900.v1.1
prunus_persica	Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1
pyrus_communis	pycom05g10870 pycom10g10060
rosa_chinensis	RchiOBHm_Chr6g0245931
rosa_laevigata	RLG00000015285
rosa_multiflora	Rmu_co8211740.1_g000001 Rmu_sc0005570.1_g000001 Rmu_sc0018377.1_g000001 Rmu_sc0018378.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215060
rosa_rugosa	Rorug05G0517500
rosa_samantha	Rh6AG031800 Rh6BG028200 Rh6CG028200 Rh6DG027500
rosa_wichuraiana	Rw6G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	203, 234
AcuI	CTGAAG	1 cut(s)	243
Alw26I	GTCTC	2 cut(s)	20, 232
ApoI	RAATTY	2 cut(s)	203, 234
AseI	ATTAAT	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	20, 232
BfmI	CTRYAG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	20, 232
BsmBI	CGTCTC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	146
BssMI	GATC	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	2 cut(s)	20, 232
BstMBI	GATC	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	43
CseI	GACGC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	20
FaiI	YATR	4 cut(s)	9, 169, 183, 268
FauI	CCCGC	1 cut(s)	88
HgaI	GACGC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	118, 232
HpyCH4III	ACNGT	1 cut(s)	85
HpyF3I	CTNAG	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	2 cut(s)	75, 114
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	1 cut(s)	207
MluCI	AATT	4 cut(s)	189, 203, 216, 234
MnlI	CCTC	1 cut(s)	4
MseI	TTAA	1 cut(s)	215
NdeII	GATC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	215
Sau3AI	GATC	1 cut(s)	118
SetI	ASST	2 cut(s)	133, 189
SfcI	CTRYAG	1 cut(s)	126
SgeI	CNNG	7 cut(s)	31, 54, 102, 108, 122, 141, 251
Sse9I	AATT	4 cut(s)	189, 203, 216, 234
SsiI	CCGC	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	238
TasI	AATT	4 cut(s)	189, 203, 216, 234
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspRI	CASTG	1 cut(s)	90
VspI	ATTAAT	1 cut(s)	215
XapI	RAATTY	2 cut(s)	203, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.