Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004157

Physical Location & Seq

Genomic Coordinates Forward (+)

4236281 .. 4243952

Gene Structure 7672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G002660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3117 bp

ATGAGCTTCTCCGCAAAGCCACAGCCACTCGCCCTAATCTCATGCACGCCTCACTCCCGCTCCCTCCGCCGCGACTTCCTCGGGTGCCCCCACAGCCTCCGCCCCCTCGCCGGCGGCCTCAGGTCGCTGAGAAAGAACCGGAGCCTCGCCGGCCCCGGCGGACGTCAGAATCCGCCGCCGCGGTTGTTGATTAAAGCGTCGCTCGGTTCTCACCCGATTCTGGTGTTGGTCGCGGTGGTGACGTTCTCGGCGGTTTCTATTGTCTACTTCAATCGGTCGGTGAAGCGGAAGAAGAGAGAGGTTAGTGGTGGAGTTGAAGTTCCGGTGGAAGATCAGAGTATTGATTTTGATGCTTTGAAAGATGAGATTAGAGAGGCGAGGGAGGAGGAAGAGGCTTCTTCTTCTTCTTCTTCTCCGGTTCTGCAGTTTCACAATTCGTCTGTGATTTCTGCTCAGGAGTCGTCGTCGTCTCTTTCACCGTTGGTGTTTGAATCCACGGCTGTGCTTCAGCCACTTCATTTTCCGACGGAAGTCACTGAGTTTGATAAACTCGGGCCTCTTTTCGAGTTGCCGAATCTGATGGGGGACTCTGATTTTGGTTCTGTGACTGTGAGTGATGAGGAAACCGTCACTGAGTCACCTTCTGTGTCTGAAAGTGATGAGGAGAGCAGTGAGGTTGGTGAAGCTAATGGCTTTCGATTAAGTAATGGAGAATCGGATAGAGAAGAGATTCACATGCTCTATGAGGCCAATAAGTCTGAGATGAAGTTGGATGATAATAAGTTTTCTTCGTTTCTGAGAGATAGCACCCTCACAAGATCAGATTCGTTTCCACAAGTTTCCCATCACAGTACTACAGAGAATGTAGAAGGCAAAATACCCAATCACAAAGAAGGCCATGTCCGCAGCAGAAAAGACTTGGGAAACGGCAATGGATATAATGGACATGTAGCAGATAAAGAACTAAGATATTTGCCTAAAAAGAACCATAAGACTGTGCCCCAACCGAATGGAATACATACAAGCGACACACATTATGTTTCTGAGCAATTAAGTGCTTACCATCGATTGCTGAAGGATGGGAGGTTATCCGATTCTTTGAGATTGCTTGAAGATTTGGAGAAAAAGGATTTGTTGGATATGAATAAGGTTTATCATGGAAGGTTTTTTGAAACCTGCAAAAAGAAAAAGGCTGTTGATCAAGCTTTTCGTTTCATCAAACTGATTCCAAATCCAACAATGAGTACATATAATATGCTTATGTCTGTCTGTGCGAGTGCTCAAGATTCAGAGGGTGCTTTCAATGTTCTGGGACTTGTCCGGGAGGCTGGGCTAAGAGTTGATTGCAAACTTTACACTACTCTGATATCAACATGTGCGAAAAGTGGAAAAGTCTACACTATGTTTGATGTCTTCCATGAGATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACTGATTGATGGTTGTGGCAGAGCTGGGGAAGTGGCAAAGGCATTTGGTGCTTATGGGATAATGAGGTCTAAGAAAGTGAAGCCAGATCGAGTTGTATACAATGCGCTTATTACTGCATGCGGTCAATCAGGAGCAGTTGACCGTGCTTTTGATGTCTTAGAAGAAATGAAGGCAGAGACACAGCCTATAGAACCTGATCACACAACTGTTGGTGCACTAATAAAAGCATGCGCAAATGCTGGTCAGGTTGAAAGGGCACGTGAAGTGTATAAGCTGATTCATAAATACAAGATTAAGGGTAGTTCTGAGGTTTACACCATAGCTGTTAATTGTTGCAGCCTGACTGGTGATTGGGACTTTGCTTGCACTGTATATGATGACATGATCAGGAATGGTGTGGTCCCTGATGAGATGTTCCTCAGTGCATTAATAGATGCTGCTGGGCACGCTGGAAAGCTAGATGCTGCCTTTGAAATCATACAGGAAGCCAGAAATCGAGGAATACAAGTTGGAACTGTATCATATAGCTCATTGATGGGCGCATGTAGCAATGCCAAAAATTGGCAGAAAGCACTGGCGCTCTATGAGGATCTTAAGTCAGCTAAAATTGAGCAGACTGTTTCAACTGTCAATGCTTTGATTACTGCCCTATGTGATGGGGATCAACTACAGAAGGCTATGGAAGTTCTGTCGGAAATGAAGAGTATAGGACTGCGTCCAAACAGTATAACATACTCCATACTTGTAGTGGCAAGTGAAAAAAAGGATGATCTAGAAGCTGGCCTGATGCTCCTTTCTCAAGCTGAAAAGGATAAAGTTGTTCCAAACCTTGTCATGTGTAGATGCATTATAGGCATGTGCTTACGGAGATCTGAGAAGGCATGTACACTGGGTGAAACTGTCTTGCCACTTGACTCGGGCCGACCGCAAGTTGATAGTAAATGGGCATCAGTGGCCTTAATGGTCTATCGGAAAACTATTGTCGCTGGTGCTACTCCTACCATTGAAATTATATCACAAGTTTTGGGATGCTTGCAGCTCCCTTATGATGCGTCATTTAAGAAGAGAGTTATTGAGAATCTTGGTGTAACTGCCGACACTTCAAGACCTTCAAAACTCTTTTCATTGATAGATGGGTTTGGTGAATATGATCCTCGTGCATTTTCATTACTTGAGGAAGCTGCTTCACTTGGAATTGTTCCATGTGTATCCTTCAAAGTTAATCCCATTGTTGTTGATGCAAAGAAGTTGCAACTTCATACTGCTAAGGTCTACATCTTGACTGTTCTGAGAGGTCTCAAACATCGGCTTGCTGCTGGTTCGAAGTTGCCCAACATGACCATTTTACTGCCTGTAGAAAAGACGCAAATTTTGTCTCCCAAGGGGAAGATGAAGACAATCTACCTTTCAGGAAGGGTTGGCCAGTCAGTTGCAGCATTATTGAGAAGGCTTGGGCTAGATTACCAAGGAAATGAATCACGTGGAAAGATAAGAATCAGTGGGTTAACCATGAAAAGATGGTTTCAGCCAAAGCTTGCTTCACCATTCACTGGGAAACCGGAAGAATTAGGCTCATCCCAGCTACGGCTGGGGAAAGGAATCACGCATCAGCAGCGCAATATTCGAACTGGAAATTTTTCCTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1038

Amino Acids

113.88

Weight (kDa)

8.38

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	415 - 586	4.3e-18	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	441 - 495	1.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	451 - 495	3.9e-12	PPR repeat family
TPR_24	PF23276	455 - 581	8.4e-15	Fungal tetratrico peptide repeats
PPR_3	PF13812	471 - 531	8.5e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	479 - 504	2.6e-06	PPR repeat
PPR_2	PF13041	489 - 529	2.2e-06	PPR repeat family
PPR_1	PF12854	514 - 546	2.3e-07	PPR repeat
PPR_2	PF13041	517 - 568	1.7e-09	PPR repeat family
PPR_long	PF17177	592 - 744	6.3e-13	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	598 - 718	9.1e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	648 - 706	7.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	660 - 708	4.9e-08	PPR repeat family
PPR_3	PF13812	683 - 738	4.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	695 - 738	4.8e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34830
fragaria_vesca	FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240
malus_domestica	MD05G1113900.v1.1
prunus_persica	Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1
pyrus_communis	pycom05g10870 pycom10g10060
rosa_chinensis	RchiOBHm_Chr6g0245931
rosa_laevigata	RLG00000015285
rosa_multiflora	Rmu_co8211740.1_g000001 Rmu_sc0005570.1_g000001 Rmu_sc0018377.1_g000001 Rmu_sc0018378.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215060
rosa_rugosa	Rorug05G0517500
rosa_samantha	Rh6AG031800 Rh6BG028200 Rh6CG028200 Rh6DG027500
rosa_wichuraiana	Rw6G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
Acc16I	TGCGCA	1 cut(s)	1699
Acc36I	ACCTGC	1 cut(s)	1184
AccB1I	GGYRCC	1 cut(s)	84
AccB7I	CCANNNNNTGG	3 cut(s)	1423, 2028, 3017
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	4 cut(s)	264, 1395, 1563, 2739
AccII	CGCG	3 cut(s)	72, 181, 233
AclWI	GGATC	3 cut(s)	2064, 2136, 2612
AcoI	YGGCCR	1 cut(s)	2887
AcsI	RAATTY	2 cut(s)	2835, 3100
AcuI	CTGAAG	2 cut(s)	491, 1094
AcvI	CACGTG	2 cut(s)	1727, 2948
AcyI	GRCGYC	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	2360
AfaI	GTAC	3 cut(s)	853, 1246, 2353
AfiI	CCNNNNNNNGG	6 cut(s)	110, 220, 1423, 2028, 3017, 3051
AflII	CTTAAG	1 cut(s)	2060
AflIII	ACRYGT	2 cut(s)	946, 1373
AjuI	GAANNNNNNNTTGG	2 cut(s)	2989, 3021
AleI	CACNNNNGTG	1 cut(s)	500
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
Alw21I	GWGCWC	2 cut(s)	1282, 1684
Alw26I	GTCTC	4 cut(s)	474, 1637, 2768, 2847
Alw44I	GTGCAC	1 cut(s)	1680
AlwI	GGATC	3 cut(s)	2064, 2136, 2612
Ama87I	CYCGRG	3 cut(s)	80, 551, 2383
AoxI	GGCC	9 cut(s)	115, 151, 554, 747, 895, 2248, 2386, 2421, 2887
ApaLI	GTGCAC	1 cut(s)	1680
ApeKI	GCWGC	9 cut(s)	906, 1803, 1904, 1931, 2503, 2648, 2780, 2900, 3079
ApoI	RAATTY	2 cut(s)	2835, 3100
ArsI	GACNNNNNNTTYG	6 cut(s)	578, 610, 1598, 1630, 2821, 2853
AseI	ATTAAT	1 cut(s)	1895
Asp700I	GAANNNNTTC	2 cut(s)	729, 3103
AspLEI	GCGC	5 cut(s)	1573, 1700, 2009, 2047, 3084
AspS9I	GGNCC	4 cut(s)	152, 554, 1867, 2386
AsuC2I	CCSGG	2 cut(s)	156, 1322
AsuII	TTCGAA	2 cut(s)	2789, 3091
AvaI	CYCGRG	3 cut(s)	80, 551, 2383
AvaII	GGWCC	1 cut(s)	1867
AxyI	CCTNAGG	1 cut(s)	119
BaeGI	GKGCMC	6 cut(s)	89, 1002, 1468, 1684, 1726, 1914
BalI	TGGCCA	1 cut(s)	2889
BanI	GGYRCC	1 cut(s)	84
BarI	GAAGNNNNNNTAC	4 cut(s)	861, 893, 2852, 2884
BauI	CACGAG	1 cut(s)	2622
BbrPI	CACGTG	2 cut(s)	1727, 2948
BbsI	GAAGAC	2 cut(s)	1405, 2867
Bbv12I	GWGCWC	2 cut(s)	1282, 1684
BbvI	GCAGC	9 cut(s)	918, 1815, 1891, 1918, 2515, 2635, 2767, 2912, 3091
BceAI	ACGGC	3 cut(s)	513, 943, 3068
BciVI	GTATCC	1 cut(s)	2686
BclI	TGATCA	3 cut(s)	1198, 1663, 1851
BcnI	CCSGG	2 cut(s)	156, 1322
BcoDI	GTCTC	4 cut(s)	474, 1637, 2768, 2847
BfaI	CTAG	3 cut(s)	1925, 2240, 2924
BfmI	CTRYAG	5 cut(s)	422, 855, 1653, 2135, 2820
BfoI	RGCGCY	1 cut(s)	2048
BfrI	CTTAAG	1 cut(s)	2060
BfuAI	ACCTGC	1 cut(s)	1184
BfuI	GTATCC	1 cut(s)	2686
BglI	GCCNNNNNGGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	2336
BmcAI	AGTACT	1 cut(s)	853
Bme1390I	CCNGG	2 cut(s)	156, 1322
Bme18I	GGWCC	1 cut(s)	1867
BmeT110I	CYCGRG	3 cut(s)	80, 551, 2383
BmgT120I	GGNCC	4 cut(s)	152, 554, 1867, 2386
BmiI	GGNNCC	4 cut(s)	86, 143, 154, 1869
BmrFI	CCNGG	2 cut(s)	156, 1322
BmrI	ACTGGG	2 cut(s)	2366, 3027
BmuI	ACTGGG	2 cut(s)	2366, 3027
BoxI	GACNNNNGTC	1 cut(s)	530
BpiI	GAAGAC	2 cut(s)	1405, 2867
BpmI	CTGGAG	1 cut(s)	1455
Bpu10I	CCTNAGC	2 cut(s)	453, 2733
Bpu14I	TTCGAA	2 cut(s)	2789, 3091
BpuEI	CTTGAG	3 cut(s)	1266, 2250, 2660
BpuMI	CCSGG	2 cut(s)	156, 1322
Bsa29I	ATCGAT	1 cut(s)	1066
BsaAI	YACGTR	2 cut(s)	1727, 2948
BsaBI	GATNNNNATC	2 cut(s)	2127, 2960
BsaHI	GRCGYC	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	2768
BsaJI	CCNNGG	7 cut(s)	79, 154, 179, 495, 2847, 2932, 3108
BsaWI	WCCGGW	4 cut(s)	138, 322, 415, 3025
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 303, 333, 449, 479
Bsc4I	CCNNNNNNNGG	6 cut(s)	110, 220, 1423, 2028, 3017, 3051
Bse118I	RCCGGY	2 cut(s)	110, 149
Bse1I	ACTGG	6 cut(s)	1816, 2046, 2361, 2890, 3022, 3100
Bse21I	CCTNAGG	1 cut(s)	119
Bse3DI	GCAATG	2 cut(s)	937, 2023
Bse8I	GATNNNNATC	2 cut(s)	2127, 2960
BseCI	ATCGAT	1 cut(s)	1066
BseDI	CCNNGG	7 cut(s)	79, 154, 179, 495, 2847, 2932, 3108
BseGI	GGATG	5 cut(s)	778, 1084, 2239, 2501, 3041
BseJI	GATNNNNATC	2 cut(s)	2127, 2960
BseLI	CCNNNNNNNGG	6 cut(s)	110, 220, 1423, 2028, 3017, 3051
BseMI	GCAATG	2 cut(s)	937, 2023
BseNI	ACTGG	6 cut(s)	1816, 2046, 2361, 2890, 3022, 3100
BseRI	GAGGAG	2 cut(s)	398, 677
BseSI	GKGCMC	6 cut(s)	89, 1002, 1468, 1684, 1726, 1914
BseXI	GCAGC	9 cut(s)	918, 1815, 1891, 1918, 2515, 2635, 2767, 2912, 3091
BseYI	CCCAGC	5 cut(s)	1328, 1490, 1907, 3045, 3055
Bsh1236I	CGCG	3 cut(s)	72, 181, 233
Bsh1285I	CGRYCG	2 cut(s)	278, 2393
BshFI	GGCC	9 cut(s)	117, 153, 556, 749, 897, 2250, 2388, 2423, 2889
BshNI	GGYRCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	1066
BsiEI	CGRYCG	2 cut(s)	278, 2393
BsiHKAI	GWGCWC	2 cut(s)	1282, 1684
BsiHKCI	CYCGRG	3 cut(s)	80, 551, 2383
BsiSI	CCGG	8 cut(s)	111, 139, 150, 156, 323, 416, 1321, 3026
BslFI	GGGAC	4 cut(s)	599, 1326, 1835, 1853
BslI	CCNNNNNNNGG	6 cut(s)	110, 220, 1423, 2028, 3017, 3051
BsmAI	GTCTC	4 cut(s)	474, 1637, 2768, 2847
BsmBI	CGTCTC	1 cut(s)	474
BsmFI	GGGAC	4 cut(s)	599, 1326, 1835, 1853
BsnI	GGCC	9 cut(s)	117, 153, 556, 749, 897, 2250, 2388, 2423, 2889
Bso31I	GGTCTC	1 cut(s)	2768
BsoBI	CYCGRG	3 cut(s)	80, 551, 2383
Bsp119I	TTCGAA	2 cut(s)	2789, 3091
Bsp1286I	GDGCHC	7 cut(s)	89, 1002, 1282, 1468, 1684, 1726, 1914
Bsp1407I	TGTACA	1 cut(s)	2351
BspANI	GGCC	9 cut(s)	117, 153, 556, 749, 897, 2250, 2388, 2423, 2889
BspDI	ATCGAT	1 cut(s)	1066
BspFNI	CGCG	3 cut(s)	72, 181, 233
BspLI	GGNNCC	4 cut(s)	86, 143, 154, 1869
BspMAI	CTGCAG	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	1184
BspPI	GGATC	3 cut(s)	2064, 2136, 2612
BspT104I	TTCGAA	2 cut(s)	2789, 3091
BspT107I	GGYRCC	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	2060
BspTNI	GGTCTC	1 cut(s)	2768
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	937, 2023
BsrFI	RCCGGY	2 cut(s)	110, 149
BsrGI	TGTACA	1 cut(s)	2351
BsrI	ACTGG	6 cut(s)	1816, 2046, 2361, 2890, 3022, 3100
BssAI	RCCGGY	2 cut(s)	110, 149
BssECI	CCNNGG	7 cut(s)	79, 154, 179, 495, 2847, 2932, 3108
BssNAI	GTATAC	1 cut(s)	1564
BssNI	GRCGYC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	2622
BssT1I	CCWWGG	3 cut(s)	2847, 2932, 3108
Bst1107I	GTATAC	1 cut(s)	1564
Bst2BI	CACGAG	1 cut(s)	2622
Bst6I	CTCTTC	5 cut(s)	287, 384, 720, 2162, 2525
BstACI	GRCGYC	1 cut(s)	163
BstAFI	CTTAAG	1 cut(s)	2060
BstAPI	GCANNNNNTGC	1 cut(s)	1514
BstAUI	TGTACA	1 cut(s)	2351
BstBAI	YACGTR	2 cut(s)	1727, 2948
BstBI	TTCGAA	2 cut(s)	2789, 3091
BstDSI	CCRYGG	2 cut(s)	179, 495
BstF5I	GGATG	5 cut(s)	778, 1084, 2239, 2501, 3041
BstFNI	CGCG	3 cut(s)	72, 181, 233
BstH2I	RGCGCY	1 cut(s)	2048
BstHHI	GCGC	5 cut(s)	1573, 1700, 2009, 2047, 3084
BstMAI	GTCTC	4 cut(s)	474, 1637, 2768, 2847
BstMCI	CGRYCG	2 cut(s)	278, 2393
BstNSI	RCATGY	8 cut(s)	739, 950, 1377, 1587, 1698, 2013, 2326, 2352
BstPAI	GACNNNNGTC	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	154, 1320
BstSFI	CTRYAG	5 cut(s)	422, 855, 1653, 2135, 2820
BstSLI	GKGCMC	6 cut(s)	89, 1002, 1468, 1684, 1726, 1914
BstUI	CGCG	3 cut(s)	72, 181, 233
BstV1I	GCAGC	9 cut(s)	918, 1815, 1891, 1918, 2515, 2635, 2767, 2912, 3091
BstV2I	GAAGAC	2 cut(s)	1405, 2867
BstX2I	RGATCY	2 cut(s)	2056, 2336
BstXI	CCANNNNNNTGG	1 cut(s)	1010
BstYI	RGATCY	2 cut(s)	2056, 2336
BstZ17I	GTATAC	1 cut(s)	1564
Bsu15I	ATCGAT	1 cut(s)	1066
Bsu36I	CCTNAGG	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	2686
BsuRI	GGCC	9 cut(s)	117, 153, 556, 749, 897, 2250, 2388, 2423, 2889
BsuTUI	ATCGAT	1 cut(s)	1066
BtgI	CCRYGG	2 cut(s)	179, 495
BtsCI	GGATG	5 cut(s)	778, 1084, 2239, 2501, 3041
BtsI	GCAGTG	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	1184
CfoI	GCGC	5 cut(s)	1573, 1700, 2009, 2047, 3084
Cfr10I	RCCGGY	2 cut(s)	110, 149
Cfr13I	GGNCC	4 cut(s)	152, 554, 1867, 2386
Cfr42I	CCGCGG	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	1066
CseI	GACGC	4 cut(s)	186, 2171, 2508, 2839
Csp6I	GTAC	3 cut(s)	852, 1245, 2352
CviQI	GTAC	3 cut(s)	852, 1245, 2352
DraIII	CACNNNGTG	1 cut(s)	2360
EaeI	YGGCCR	1 cut(s)	2887
Eam1104I	CTCTTC	5 cut(s)	287, 384, 720, 2162, 2525
EarI	CTCTTC	5 cut(s)	287, 384, 720, 2162, 2525
EciI	GGCGGA	4 cut(s)	56, 89, 162, 174
Eco130I	CCWWGG	3 cut(s)	2847, 2932, 3108
Eco31I	GGTCTC	1 cut(s)	2768
Eco32I	GATATC	1 cut(s)	1368
Eco47I	GGWCC	1 cut(s)	1867
Eco57I	CTGAAG	2 cut(s)	491, 1094
Eco72I	CACGTG	2 cut(s)	1727, 2948
Eco81I	CCTNAGG	1 cut(s)	119
Eco88I	CYCGRG	3 cut(s)	80, 551, 2383
EcoRV	GATATC	1 cut(s)	1368
EcoT14I	CCWWGG	3 cut(s)	2847, 2932, 3108
EcoT22I	ATGCAT	1 cut(s)	2315
ErhI	CCWWGG	3 cut(s)	2847, 2932, 3108
Esp3I	CGTCTC	1 cut(s)	474
FaqI	GGGAC	4 cut(s)	599, 1326, 1835, 1853
FauI	CCCGC	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	1459
FbaI	TGATCA	3 cut(s)	1198, 1663, 1851
FblI	GTMKAC	4 cut(s)	264, 1395, 1563, 2739
FokI	GGATG	5 cut(s)	785, 1091, 2246, 2508, 3028
FspBI	CTAG	3 cut(s)	1925, 2240, 2924
FspI	TGCGCA	1 cut(s)	1699
GlaI	GCGC	5 cut(s)	1572, 1699, 2008, 2046, 3083
GsaI	CCCAGC	5 cut(s)	1332, 1494, 1911, 3049, 3059
GsuI	CTGGAG	1 cut(s)	1455
HaeII	RGCGCY	1 cut(s)	2048
HaeIII	GGCC	9 cut(s)	117, 153, 556, 749, 897, 2250, 2388, 2423, 2889
HapII	CCGG	8 cut(s)	111, 139, 150, 156, 323, 416, 1321, 3026
HgaI	GACGC	4 cut(s)	186, 2171, 2508, 2839
HhaI	GCGC	5 cut(s)	1573, 1700, 2009, 2047, 3084
Hin1I	GRCGYC	1 cut(s)	163
Hin6I	GCGC	5 cut(s)	1571, 1698, 2007, 2045, 3082
HinP1I	GCGC	5 cut(s)	1571, 1698, 2007, 2045, 3082
HincII	GTYRAC	2 cut(s)	1606, 2973
HindII	GTYRAC	2 cut(s)	1606, 2973
HindIII	AAGCTT	2 cut(s)	1203, 2999
HpaI	GTTAAC	1 cut(s)	2973
HpaII	CCGG	8 cut(s)	111, 139, 150, 156, 323, 416, 1321, 3026
Hpy188III	TCNNGA	8 cut(s)	455, 1283, 1596, 1855, 2240, 2571, 2746, 2877
Hpy99I	CGWCG	4 cut(s)	202, 466, 469, 529
HpyCH4IV	ACGT	4 cut(s)	163, 242, 1726, 2947
HpySE526I	ACGT	4 cut(s)	163, 242, 1726, 2947
Hsp92I	GRCGYC	1 cut(s)	163
HspAI	GCGC	5 cut(s)	1571, 1698, 2007, 2045, 3082
KroI	GCCGGC	2 cut(s)	110, 149
KroNI	GCCGGC	2 cut(s)	112, 151
Ksp22I	TGATCA	3 cut(s)	1198, 1663, 1851
KspAI	GTTAAC	1 cut(s)	2973
KspI	CCGCGG	1 cut(s)	182
LmnI	GCTCC	5 cut(s)	65, 141, 1598, 2262, 2511
Lsp1109I	GCAGC	9 cut(s)	918, 1815, 1891, 1918, 2515, 2635, 2767, 2912, 3091
MaeI	CTAG	3 cut(s)	1925, 2240, 2924
MaeII	ACGT	4 cut(s)	163, 242, 1726, 2947
MaeIII	GTNAC	6 cut(s)	238, 532, 604, 628, 636, 2554
MbiI	CCGCTC	1 cut(s)	60
MflI	RGATCY	2 cut(s)	2056, 2336
MhlI	GDGCHC	7 cut(s)	89, 1002, 1282, 1468, 1684, 1726, 1914
MlsI	TGGCCA	1 cut(s)	2889
MluNI	TGGCCA	1 cut(s)	2889
MlyI	GAGTC	4 cut(s)	467, 581, 644, 2375
MmeI	TCCRAC	6 cut(s)	548, 750, 1116, 1259, 1957, 2139
Mox20I	TGGCCA	1 cut(s)	2889
Mph1103I	ATGCAT	1 cut(s)	2315
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	2 cut(s)	110, 149
MroXI	GAANNNNTTC	2 cut(s)	729, 3103
MscI	TGGCCA	1 cut(s)	2889
MslI	CAYNNNNRTG	2 cut(s)	500, 1458
Msp20I	TGGCCA	1 cut(s)	2889
MspA1I	CMGCKG	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	2060
MspI	CCGG	8 cut(s)	111, 139, 150, 156, 323, 416, 1321, 3026
MspR9I	CCNGG	2 cut(s)	156, 1322
MvnI	CGCG	3 cut(s)	72, 181, 233
NaeI	GCCGGC	2 cut(s)	112, 151
NciI	CCSGG	2 cut(s)	156, 1322
NdeI	CATATG	1 cut(s)	1459
NgoMIV	GCCGGC	2 cut(s)	110, 149
NlaIV	GGNNCC	4 cut(s)	86, 143, 154, 1869
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	5 cut(s)	238, 532, 604, 628, 636
NsbI	TGCGCA	1 cut(s)	1699
NsiI	ATGCAT	1 cut(s)	2315
NspI	RCATGY	8 cut(s)	739, 950, 1377, 1587, 1698, 2013, 2326, 2352
NspV	TTCGAA	2 cut(s)	2789, 3091
OliI	CACNNNNGTG	1 cut(s)	500
PaeI	GCATGC	2 cut(s)	1587, 1698
PciI	ACATGT	2 cut(s)	946, 1373
PdiI	GCCGGC	2 cut(s)	112, 151
PdmI	GAANNNNTTC	2 cut(s)	729, 3103
PflFI	GACNNNGTC	1 cut(s)	2181
PflMI	CCANNNNNTGG	3 cut(s)	1423, 2028, 3017
PfoI	TCCNGGA	1 cut(s)	1320
PleI	GAGTC	4 cut(s)	466, 581, 643, 2375
PmaCI	CACGTG	2 cut(s)	1727, 2948
PmlI	CACGTG	2 cut(s)	1727, 2948
PpsI	GAGTC	4 cut(s)	466, 581, 643, 2375
Ppu21I	YACGTR	2 cut(s)	1727, 2948
PscI	ACATGT	2 cut(s)	946, 1373
PshAI	GACNNNNGTC	1 cut(s)	530
PshBI	ATTAAT	1 cut(s)	1895
PspCI	CACGTG	2 cut(s)	1727, 2948
PspFI	CCCAGC	5 cut(s)	1328, 1490, 1907, 3045, 3055
PspN4I	GGNNCC	4 cut(s)	86, 143, 154, 1869
PspPI	GGNCC	4 cut(s)	152, 554, 1867, 2386
PstI	CTGCAG	1 cut(s)	426
PsuI	RGATCY	2 cut(s)	2056, 2336
PsyI	GACNNNGTC	1 cut(s)	2181
RsaI	GTAC	3 cut(s)	853, 1246, 2353
RsaNI	GTAC	3 cut(s)	852, 1245, 2352
RseI	CAYNNNNRTG	2 cut(s)	500, 1458
SacII	CCGCGG	1 cut(s)	182
Sau96I	GGNCC	4 cut(s)	152, 554, 1867, 2386
ScaI	AGTACT	1 cut(s)	853
SchI	GAGTC	4 cut(s)	467, 581, 644, 2375
ScrFI	CCNGG	2 cut(s)	156, 1322
SduI	GDGCHC	7 cut(s)	89, 1002, 1282, 1468, 1684, 1726, 1914
SfcI	CTRYAG	5 cut(s)	422, 855, 1653, 2135, 2820
Sfr303I	CCGCGG	1 cut(s)	182
SfuI	TTCGAA	2 cut(s)	2789, 3091
SgrAI	CRCCGGYG	1 cut(s)	110
SgrBI	CCGCGG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	1867
SmiMI	CAYNNNNRTG	2 cut(s)	500, 1458
SmlI	CTYRAG	4 cut(s)	1281, 2060, 2265, 2639
SmoI	CTYRAG	4 cut(s)	1281, 2060, 2265, 2639
SphI	GCATGC	2 cut(s)	1587, 1698
SspI	AATATT	1 cut(s)	3088
SspMI	CTAG	3 cut(s)	1925, 2240, 2924
StyD4I	CCNGG	2 cut(s)	154, 1320
StyI	CCWWGG	3 cut(s)	2847, 2932, 3108
TaiI	ACGT	4 cut(s)	166, 245, 1729, 2950
TaqI	TCGA	7 cut(s)	564, 697, 1066, 1555, 1963, 2789, 3091
TaqII	GACCGA	1 cut(s)	264
TatI	WGTACW	3 cut(s)	851, 1244, 2351
TauI	GCSGC	4 cut(s)	72, 117, 178, 181
TseFI	GTSAC	5 cut(s)	238, 532, 604, 628, 636
TseI	GCWGC	9 cut(s)	906, 1803, 1904, 1931, 2503, 2648, 2780, 2900, 3079
Tsp45I	GTSAC	5 cut(s)	238, 532, 604, 628, 636
TspGWI	ACGGA	2 cut(s)	542, 2347
Tth111I	GACNNNGTC	1 cut(s)	2181
Van91I	CCANNNNNTGG	3 cut(s)	1423, 2028, 3017
Vha464I	CTTAAG	1 cut(s)	2060
VneI	GTGCAC	1 cut(s)	1680
VpaK11BI	GGWCC	1 cut(s)	1867
VspI	ATTAAT	1 cut(s)	1895
XapI	RAATTY	2 cut(s)	2835, 3100
XbaI	TCTAGA	1 cut(s)	2239
XceI	RCATGY	8 cut(s)	739, 950, 1377, 1587, 1698, 2013, 2326, 2352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2212
XmiI	GTMKAC	4 cut(s)	264, 1395, 1563, 2739
XmnI	GAANNNNTTC	2 cut(s)	729, 3103
XspI	CTAG	3 cut(s)	1925, 2240, 2924
ZraI	GACGTC	1 cut(s)	164
ZrmI	AGTACT	1 cut(s)	853
Zsp2I	ATGCAT	1 cut(s)	2315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.