Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004157

Physical Location & Seq

Genomic Coordinates Reverse (-)

65686000 .. 65694107

Gene Structure 8108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00215060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3126 bp

ATGAGCTTCTCGGCGAAGCCTCAGCCACTCGCCCTAATCTCATGCACGCCTCACTCCCGCTCCCTCCGCCGCGACTTCCTCGGGTGCCCCCACAGCCTCCGCCCACTCGCCGGCGGCCTCGGGTCTCTGCGAAAGAACCGGAGCCTCGCCGGCGCCGGCGGACGTCAGAACCCGCCGCCGCGGTTGTTGATTAAAGCGTCGCTCGGTTCTCACTCGATTCTGGTGTTCGTCGCCGTGGTGACGTTCTCGGCGGTTTCTATTGTCTACCTCAATCGGTTGGTGAAGCGGAAGAAGAGAGAGGTTAGTGGTGAAGTTGAAGTTCCGGTGGAAGATCAGAGTATTGATTTTGATGCTTTGAAAGATGAGATTAGAGAGGCGAGGGAGGAGGAAGAGGCTTCTTCTTCTTCTTCTTCTTCTTCTCCGGTTCTGCAGTTTCACAATTCGTCTGTGATTTCTGCTCAGGAGTCGTCGTCGCCGTCTCTTTCACCTTTGGTGTTTGAATCCACGGCTGTGCTTCAGCCGCTTCATTTTCCGACGGAAGTCACTGAGTTTGATAAACTCGAGCCTTTTTTCGAGTTGCCGAATCTGATGGGCGACTCTGATTTTGGCTCTGTGACTGTGAGTGATGAGGAAACCATCACTGAGTCACCTTCTGTGTCTGGAAGTGAAGAGGAAGGCAGTGAGGTTGGTGAAGCTAATGGCTTTCGTTTGCGTAATGGAGAATCGGACAGAGAAGAGATTCACATGTTCTATGAGGCCAACAAGTCTGAGATGAAGTTGGATGATGATAAGTTTTCTTCGTTTCTGAGAAATAGCACCCTCACAAGATCAGATTCGTTTCAACAAGTTTCGCATCACAGTACTACAGAGAATGTAGAAGGCAAAATACCTAATCACAAAGAAGGCCATGTCCACAGCGGAAAAGACTTGGGAAACGGCAATGGATATAATGGACATGTAGCAGATAAAGAACTAAGACATTTGCCTAAAAAGAACCATAAGACTGTGCCCCAACCGAATGGAATACATACAAGCGACGCACATTATGTTTCCGAGCAATTAAGTGCTTACCATCGATTGCTGAAGGATGGGAGGTTATCCGACTCTTTAAAATTGCTTGAAGATTTGGAGAAAAAGGATTTGTTGGATATGAATAAGGTTTATCATGGAAGGTTTTTTGAAACCTGCAAAAAGAAAAAGGCTGTTGATCAAGCTTTTCGTTTCATCAAACTGATTCCAAATCCAACAATGAGTACATATAATATGCTTATGTCTGTCTGTGCGAGTGCTCAAGATTCAGAGGGTGCTTTTAATGTTCTGGGACTTGTCCGGGAGGCTGGCCTAAGAGTTGATTGCAAACTTTACACTACTCTGATATCAACATGTGCGAAAAGTGGAAAAGTCTACACTATGTTTGATGTCTTCCATGAGATGGTTAGTGCTGGTGTAGAACCAAATGTTCACACATATGGGGCACTGATTGATGGTTGTGGTAGAGCTGGGGAAGTGGCAAAGGCATTTGGTGCTTATGGGATAATGAGGTCTAAGAAAGTGAAGCCAGATCGAGTTGTATTCAATGCGCTTATTGCTGCATGCGGTCAATCAGGAGCAGTTGACCGTGCTTTTGATGTCTTAGAAGAAATGAAGGCAGAGACACAGCCTATAGAACCTGATCACACAACTGTTGGTGCACTAATAAAAGCATGCACAAATGCTGGTCAGGTTGAAAGGGCACGTGAAGTGTATAAGATGATTCATAAATACAAGATTAAGGGTAGTTCTGAGGTTTACACCATAGCTGTTAATTGTTGCAGCCTGACTGGTGATTGGGACTTTGCTTGCACTGTATATGCTGACATGACCAGGAATGGTGTGGTCCCTGATGAGATGTTCCTCAGTGCATTAATAGATGTTGCTGGGCATGCTGGAAAGCTAGATGCTGCCTTTGAAATCATACAGGAAGCCAGAAATCGAGGAATACAAGTTGGAACTGTATCATATAGCTCATTGATGGGCGCATGTAGCAATGCCAAAAATTGGCAGAAAGCACTGGAGCTCTATGAGGATCTTAAGTCAGCTAAAATTGAGCAGACTGTTTCAACTGTCAATGCTTTGATTACTGCCCTATGTGATGGGGATCAACTACAGAAGGCTATGGAAGTTCTGTCGGAAATGAAGAGTATAGGACTGCGTCCAAACAGTATAACATACTCCATACTTGTAGTGGCAAGTGAAAAGAAGGATGATCTAGAAGCTGGCCTGATGCTCCTTTCTCAAGCTGAAAAGGATAAAGTTGTTCCAAACCTTGTCATGTGTAGATGCATTATAGGCATGTGCTTACGGAGATCTGAGAAGGCATGTACACTGGGTGAAACTGTCTTGCCGCTTGACTCAGGCCGACCGCAAGTTGATAGTAAATGGGCATCAGTGGCCTTAATGGTCTATCGGAAAACTATTGTAGCTGGTGCTACTCCTACCATTGAAATTATATCACAAGTTTTGGGATGCTTGCAGCTCCCTTATGATGCATCATTTAAGAAGAGAGTTATTGAGAATCTTGGTGTAACTGCCGACACTTCAAGACCTTCAAAACTCTGTTCATTGATAGATGGGTTTGGTGAATATGATCCTCGTGCATTTTCATTACTTGAGGAAGCTGCTTCACTTGGAATTGTTCCATGTGTATCCTTCAAAGTTAATCCCATAGTTGTTGATGTAAAGAAGTTGCAACTTCATACTGCTAAGGTCTACATCTTGACTGTTCTGAGAGGTCTCAAACATCGGCTTGCTGCTGGTTCGAAGCTGCCCAACATGACCATTTTACTGCCTGTAGAAAAGACGCAAATTTTGTCTCCCAAGGGGAAGATGAAGACAATCTACCTTTCAGGAAGGGTTGGCCAGTCAGTTGCAGCATTATTGAGAAGGCTTGGGCTAGATTACCAAGGAAATGAATCACGTGGAAAGATAAGAATCAGTGGGTTAACCATGAAAAGATGGTTTCAGCCAAAGCTTGCTTCACCATTCACTGGGAAACCGGAAGAATTAGGCTCATCCCAGCTACGGCTGGGGAAAGGAATCACGCATCAGCAGCGCAATATTCGAACTGGAAATTTTTCCTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1041

Amino Acids

114.09

Weight (kDa)

8.07

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	418 - 589	6.2e-18	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	444 - 498	1.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	454 - 498	3.9e-12	PPR repeat family
TPR_24	PF23276	458 - 584	1.4e-14	Fungal tetratrico peptide repeats
PPR_3	PF13812	474 - 534	1.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	482 - 507	2.6e-06	PPR repeat
PPR_1	PF12854	517 - 549	1.5e-06	PPR repeat
PPR_2	PF13041	520 - 570	3.9e-08	PPR repeat family
TPR_24	PF23276	578 - 689	7.8e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	612 - 707	1.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	651 - 709	1.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	663 - 711	2e-08	PPR repeat family
PPR_3	PF13812	686 - 741	4.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	698 - 741	4.8e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34830
fragaria_vesca	FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240
malus_domestica	MD05G1113900.v1.1
prunus_persica	Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1
pyrus_communis	pycom05g10870 pycom10g10060
rosa_chinensis	RchiOBHm_Chr6g0245931
rosa_laevigata	RLG00000015285
rosa_multiflora	Rmu_co8211740.1_g000001 Rmu_sc0005570.1_g000001 Rmu_sc0018377.1_g000001 Rmu_sc0018378.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215060
rosa_rugosa	Rorug05G0517500
rosa_samantha	Rh6AG031800 Rh6BG028200 Rh6CG028200 Rh6DG027500
rosa_wichuraiana	Rw6G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
Acc36I	ACCTGC	1 cut(s)	1193
AccB1I	GGYRCC	2 cut(s)	84, 152
AccB7I	CCANNNNNTGG	3 cut(s)	1432, 2037, 3026
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	3 cut(s)	264, 1404, 2748
AccII	CGCG	2 cut(s)	72, 181
AclWI	GGATC	3 cut(s)	2073, 2145, 2621
AcoI	YGGCCR	1 cut(s)	2896
AcsI	RAATTY	2 cut(s)	2844, 3109
AcuI	CTGAAG	2 cut(s)	500, 1103
AcvI	CACGTG	2 cut(s)	1736, 2957
AcyI	GRCGYC	2 cut(s)	153, 163
AdeI	CACNNNGTG	1 cut(s)	2369
AfaI	GTAC	3 cut(s)	862, 1255, 2362
AfiI	CCNNNNNNNGG	5 cut(s)	110, 1432, 2037, 3026, 3060
AflII	CTTAAG	1 cut(s)	2069
AflIII	ACRYGT	3 cut(s)	744, 955, 1382
AjnI	CCWGG	1 cut(s)	1862
AjuI	GAANNNNNNNTTGG	2 cut(s)	2998, 3030
AleI	CACNNNNGTG	1 cut(s)	509
Alw21I	GWGCWC	3 cut(s)	1291, 1693, 2058
Alw26I	GTCTC	5 cut(s)	129, 483, 1646, 2777, 2856
Alw44I	GTGCAC	1 cut(s)	1689
AlwI	GGATC	3 cut(s)	2073, 2145, 2621
Ama87I	CYCGRG	3 cut(s)	80, 119, 560
AoxI	GGCC	8 cut(s)	115, 756, 904, 1339, 2257, 2395, 2430, 2896
ApaLI	GTGCAC	1 cut(s)	1689
ApeKI	GCWGC	9 cut(s)	1589, 1812, 1940, 2512, 2657, 2789, 2803, 2909, 3088
ApoI	RAATTY	2 cut(s)	2844, 3109
ArsI	GACNNNNNNTTYG	6 cut(s)	587, 619, 1607, 1639, 2830, 2862
AseI	ATTAAT	1 cut(s)	1904
Asp700I	GAANNNNTTC	2 cut(s)	738, 3112
AspLEI	GCGC	4 cut(s)	155, 1582, 2018, 3093
AspS9I	GGNCC	1 cut(s)	1876
AsuC2I	CCSGG	1 cut(s)	1331
AsuII	TTCGAA	2 cut(s)	2798, 3100
AvaI	CYCGRG	3 cut(s)	80, 119, 560
AvaII	GGWCC	1 cut(s)	1876
BaeGI	GKGCMC	5 cut(s)	89, 1011, 1477, 1693, 1735
BalI	TGGCCA	1 cut(s)	2898
BanI	GGYRCC	2 cut(s)	84, 152
BanII	GRGCYC	1 cut(s)	2058
BarI	GAAGNNNNNNTAC	4 cut(s)	870, 902, 2861, 2893
BauI	CACGAG	1 cut(s)	2631
BbrPI	CACGTG	2 cut(s)	1736, 2957
BbsI	GAAGAC	2 cut(s)	1414, 2876
Bbv12I	GWGCWC	3 cut(s)	1291, 1693, 2058
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	9 cut(s)	1576, 1824, 1927, 2524, 2644, 2776, 2790, 2921, 3100
BceAI	ACGGC	5 cut(s)	218, 460, 522, 952, 3077
BciT130I	CCWGG	1 cut(s)	1864
BciVI	GTATCC	1 cut(s)	2695
BclI	TGATCA	2 cut(s)	1207, 1672
BcnI	CCSGG	1 cut(s)	1331
BcoDI	GTCTC	5 cut(s)	129, 483, 1646, 2777, 2856
BfaI	CTAG	3 cut(s)	1934, 2249, 2933
BfmI	CTRYAG	5 cut(s)	428, 864, 1662, 2144, 2829
BfoI	RGCGCY	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	2069
BfuAI	ACCTGC	1 cut(s)	1193
BfuI	GTATCC	1 cut(s)	2695
BglI	GCCNNNNNGGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	2345
BmcAI	AGTACT	1 cut(s)	862
Bme1390I	CCNGG	2 cut(s)	1331, 1864
Bme18I	GGWCC	1 cut(s)	1876
BmeT110I	CYCGRG	3 cut(s)	80, 119, 560
BmgT120I	GGNCC	1 cut(s)	1876
BmiI	GGNNCC	4 cut(s)	86, 143, 154, 1878
BmrFI	CCNGG	2 cut(s)	1331, 1864
BmrI	ACTGGG	2 cut(s)	2375, 3036
BmuI	ACTGGG	2 cut(s)	2375, 3036
BoxI	GACNNNNGTC	1 cut(s)	539
BpiI	GAAGAC	2 cut(s)	1414, 2876
BpmI	CTGGAG	1 cut(s)	2072
Bpu10I	CCTNAGC	3 cut(s)	21, 459, 2742
Bpu14I	TTCGAA	2 cut(s)	2798, 3100
BpuEI	CTTGAG	3 cut(s)	1275, 2259, 2669
BpuMI	CCSGG	1 cut(s)	1331
Bsa29I	ATCGAT	1 cut(s)	1075
BsaAI	YACGTR	2 cut(s)	1736, 2957
BsaBI	GATNNNNATC	2 cut(s)	2136, 2969
BsaHI	GRCGYC	2 cut(s)	153, 163
BsaI	GGTCTC	2 cut(s)	129, 2777
BsaJI	CCNNGG	8 cut(s)	79, 118, 179, 234, 504, 2856, 2941, 3117
BsaWI	WCCGGW	4 cut(s)	138, 322, 421, 3034
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 455, 485
Bsc4I	CCNNNNNNNGG	5 cut(s)	110, 1432, 2037, 3026, 3060
Bse118I	RCCGGY	3 cut(s)	110, 149, 155
Bse1I	ACTGG	6 cut(s)	1825, 2055, 2370, 2899, 3031, 3109
Bse3DI	GCAATG	2 cut(s)	946, 2032
Bse8I	GATNNNNATC	2 cut(s)	2136, 2969
BseBI	CCWGG	1 cut(s)	1864
BseCI	ATCGAT	1 cut(s)	1075
BseDI	CCNNGG	8 cut(s)	79, 118, 179, 234, 504, 2856, 2941, 3117
BseGI	GGATG	5 cut(s)	787, 1093, 2248, 2510, 3050
BseJI	GATNNNNATC	2 cut(s)	2136, 2969
BseLI	CCNNNNNNNGG	5 cut(s)	110, 1432, 2037, 3026, 3060
BseMI	GCAATG	2 cut(s)	946, 2032
BseNI	ACTGG	6 cut(s)	1825, 2055, 2370, 2899, 3031, 3109
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	5 cut(s)	89, 1011, 1477, 1693, 1735
BseXI	GCAGC	9 cut(s)	1576, 1824, 1927, 2524, 2644, 2776, 2790, 2921, 3100
BseYI	CCCAGC	4 cut(s)	1499, 1916, 3054, 3064
Bsh1236I	CGCG	2 cut(s)	72, 181
Bsh1285I	CGRYCG	1 cut(s)	2402
BshFI	GGCC	8 cut(s)	117, 758, 906, 1341, 2259, 2397, 2432, 2898
BshNI	GGYRCC	2 cut(s)	84, 152
BshVI	ATCGAT	1 cut(s)	1075
BsiEI	CGRYCG	1 cut(s)	2402
BsiHKAI	GWGCWC	3 cut(s)	1291, 1693, 2058
BsiHKCI	CYCGRG	3 cut(s)	80, 119, 560
BsiSI	CCGG	8 cut(s)	111, 139, 150, 156, 323, 422, 1330, 3035
BslFI	GGGAC	3 cut(s)	1335, 1844, 1862
BslI	CCNNNNNNNGG	5 cut(s)	110, 1432, 2037, 3026, 3060
BsmAI	GTCTC	5 cut(s)	129, 483, 1646, 2777, 2856
BsmBI	CGTCTC	1 cut(s)	483
BsmFI	GGGAC	3 cut(s)	1335, 1844, 1862
BsnI	GGCC	8 cut(s)	117, 758, 906, 1341, 2259, 2397, 2432, 2898
Bso31I	GGTCTC	2 cut(s)	129, 2777
BsoBI	CYCGRG	3 cut(s)	80, 119, 560
Bsp119I	TTCGAA	2 cut(s)	2798, 3100
Bsp1286I	GDGCHC	7 cut(s)	89, 1011, 1291, 1477, 1693, 1735, 2058
Bsp1407I	TGTACA	1 cut(s)	2360
BspANI	GGCC	8 cut(s)	117, 758, 906, 1341, 2259, 2397, 2432, 2898
BspDI	ATCGAT	1 cut(s)	1075
BspFNI	CGCG	2 cut(s)	72, 181
BspLI	GGNNCC	4 cut(s)	86, 143, 154, 1878
BspMAI	CTGCAG	1 cut(s)	432
BspMI	ACCTGC	1 cut(s)	1193
BspPI	GGATC	3 cut(s)	2073, 2145, 2621
BspT104I	TTCGAA	2 cut(s)	2798, 3100
BspT107I	GGYRCC	2 cut(s)	84, 152
BspTI	CTTAAG	1 cut(s)	2069
BspTNI	GGTCTC	2 cut(s)	129, 2777
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	946, 2032
BsrFI	RCCGGY	3 cut(s)	110, 149, 155
BsrGI	TGTACA	1 cut(s)	2360
BsrI	ACTGG	6 cut(s)	1825, 2055, 2370, 2899, 3031, 3109
BssAI	RCCGGY	3 cut(s)	110, 149, 155
BssECI	CCNNGG	8 cut(s)	79, 118, 179, 234, 504, 2856, 2941, 3117
BssNI	GRCGYC	2 cut(s)	153, 163
BssSI	CACGAG	1 cut(s)	2631
BssT1I	CCWWGG	3 cut(s)	2856, 2941, 3117
Bst2BI	CACGAG	1 cut(s)	2631
Bst2UI	CCWGG	1 cut(s)	1864
Bst6I	CTCTTC	6 cut(s)	287, 384, 663, 729, 2171, 2534
BstACI	GRCGYC	2 cut(s)	153, 163
BstAFI	CTTAAG	1 cut(s)	2069
BstAPI	GCANNNNNTGC	1 cut(s)	1523
BstAUI	TGTACA	1 cut(s)	2360
BstBAI	YACGTR	2 cut(s)	1736, 2957
BstBI	TTCGAA	2 cut(s)	2798, 3100
BstDSI	CCRYGG	3 cut(s)	179, 234, 504
BstF5I	GGATG	5 cut(s)	787, 1093, 2248, 2510, 3050
BstFNI	CGCG	2 cut(s)	72, 181
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	4 cut(s)	155, 1582, 2018, 3093
BstMAI	GTCTC	5 cut(s)	129, 483, 1646, 2777, 2856
BstMCI	CGRYCG	1 cut(s)	2402
BstNI	CCWGG	1 cut(s)	1864
BstNSI	RCATGY	9 cut(s)	748, 959, 1386, 1596, 1707, 1925, 2022, 2335, 2361
BstPAI	GACNNNNGTC	1 cut(s)	539
BstSCI	CCNGG	2 cut(s)	1329, 1862
BstSFI	CTRYAG	5 cut(s)	428, 864, 1662, 2144, 2829
BstSLI	GKGCMC	5 cut(s)	89, 1011, 1477, 1693, 1735
BstUI	CGCG	2 cut(s)	72, 181
BstV1I	GCAGC	9 cut(s)	1576, 1824, 1927, 2524, 2644, 2776, 2790, 2921, 3100
BstV2I	GAAGAC	2 cut(s)	1414, 2876
BstX2I	RGATCY	2 cut(s)	2065, 2345
BstXI	CCANNNNNNTGG	1 cut(s)	1019
BstYI	RGATCY	2 cut(s)	2065, 2345
Bsu15I	ATCGAT	1 cut(s)	1075
BsuI	GTATCC	1 cut(s)	2695
BsuRI	GGCC	8 cut(s)	117, 758, 906, 1341, 2259, 2397, 2432, 2898
BsuTUI	ATCGAT	1 cut(s)	1075
BtgI	CCRYGG	3 cut(s)	179, 234, 504
BtsCI	GGATG	5 cut(s)	787, 1093, 2248, 2510, 3050
BtsI	GCAGTG	1 cut(s)	685
BveI	ACCTGC	1 cut(s)	1193
CfoI	GCGC	4 cut(s)	155, 1582, 2018, 3093
Cfr10I	RCCGGY	3 cut(s)	110, 149, 155
Cfr13I	GGNCC	1 cut(s)	1876
Cfr42I	CCGCGG	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	1075
CseI	GACGC	4 cut(s)	186, 1046, 2180, 2848
Csp6I	GTAC	3 cut(s)	861, 1254, 2361
CviQI	GTAC	3 cut(s)	861, 1254, 2361
DinI	GGCGCC	1 cut(s)	154
DraI	TTTAAA	1 cut(s)	1110
DraIII	CACNNNGTG	1 cut(s)	2369
EaeI	YGGCCR	1 cut(s)	2896
Eam1104I	CTCTTC	6 cut(s)	287, 384, 663, 729, 2171, 2534
EarI	CTCTTC	6 cut(s)	287, 384, 663, 729, 2171, 2534
EciI	GGCGGA	3 cut(s)	56, 89, 174
Ecl136II	GAGCTC	1 cut(s)	2056
Eco130I	CCWWGG	3 cut(s)	2856, 2941, 3117
Eco24I	GRGCYC	1 cut(s)	2058
Eco31I	GGTCTC	2 cut(s)	129, 2777
Eco32I	GATATC	1 cut(s)	1377
Eco47I	GGWCC	1 cut(s)	1876
Eco53kI	GAGCTC	1 cut(s)	2056
Eco57I	CTGAAG	2 cut(s)	500, 1103
Eco72I	CACGTG	2 cut(s)	1736, 2957
Eco88I	CYCGRG	3 cut(s)	80, 119, 560
EcoICRI	GAGCTC	1 cut(s)	2056
EcoRII	CCWGG	1 cut(s)	1862
EcoRV	GATATC	1 cut(s)	1377
EcoT14I	CCWWGG	3 cut(s)	2856, 2941, 3117
EcoT22I	ATGCAT	2 cut(s)	2324, 2530
EcoT38I	GRGCYC	1 cut(s)	2058
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	3 cut(s)	2856, 2941, 3117
Esp3I	CGTCTC	1 cut(s)	483
FaqI	GGGAC	3 cut(s)	1335, 1844, 1862
FauI	CCCGC	2 cut(s)	65, 180
FauNDI	CATATG	1 cut(s)	1468
FbaI	TGATCA	2 cut(s)	1207, 1672
FblI	GTMKAC	3 cut(s)	264, 1404, 2748
FokI	GGATG	5 cut(s)	794, 1100, 2255, 2517, 3037
FriOI	GRGCYC	1 cut(s)	2058
FspBI	CTAG	3 cut(s)	1934, 2249, 2933
GlaI	GCGC	4 cut(s)	154, 1581, 2017, 3092
GsaI	CCCAGC	4 cut(s)	1503, 1920, 3058, 3068
GsuI	CTGGAG	1 cut(s)	2072
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	8 cut(s)	117, 758, 906, 1341, 2259, 2397, 2432, 2898
HapII	CCGG	8 cut(s)	111, 139, 150, 156, 323, 422, 1330, 3035
HgaI	GACGC	4 cut(s)	186, 1046, 2180, 2848
HhaI	GCGC	4 cut(s)	155, 1582, 2018, 3093
Hin1I	GRCGYC	2 cut(s)	153, 163
Hin6I	GCGC	4 cut(s)	153, 1580, 2016, 3091
HinP1I	GCGC	4 cut(s)	153, 1580, 2016, 3091
HincII	GTYRAC	2 cut(s)	1615, 2982
HindII	GTYRAC	2 cut(s)	1615, 2982
HindIII	AAGCTT	2 cut(s)	1212, 3008
HpaI	GTTAAC	1 cut(s)	2982
HpaII	CCGG	8 cut(s)	111, 139, 150, 156, 323, 422, 1330, 3035
Hpy188III	TCNNGA	8 cut(s)	461, 660, 1292, 1605, 2249, 2580, 2755, 2886
Hpy99I	CGWCG	6 cut(s)	202, 233, 472, 475, 538, 1040
HpyCH4IV	ACGT	4 cut(s)	163, 242, 1735, 2956
HpySE526I	ACGT	4 cut(s)	163, 242, 1735, 2956
Hsp92I	GRCGYC	2 cut(s)	153, 163
HspAI	GCGC	4 cut(s)	153, 1580, 2016, 3091
KasI	GGCGCC	1 cut(s)	152
KroI	GCCGGC	3 cut(s)	110, 149, 155
KroNI	GCCGGC	3 cut(s)	112, 151, 157
Ksp22I	TGATCA	2 cut(s)	1207, 1672
KspAI	GTTAAC	1 cut(s)	2982
KspI	CCGCGG	1 cut(s)	182
LmnI	GCTCC	6 cut(s)	65, 141, 1607, 2053, 2271, 2520
Lsp1109I	GCAGC	9 cut(s)	1576, 1824, 1927, 2524, 2644, 2776, 2790, 2921, 3100
MaeI	CTAG	3 cut(s)	1934, 2249, 2933
MaeII	ACGT	4 cut(s)	163, 242, 1735, 2956
MaeIII	GTNAC	5 cut(s)	238, 541, 613, 645, 2563
MbiI	CCGCTC	1 cut(s)	60
MflI	RGATCY	2 cut(s)	2065, 2345
MhlI	GDGCHC	7 cut(s)	89, 1011, 1291, 1477, 1693, 1735, 2058
MlsI	TGGCCA	1 cut(s)	2898
MluNI	TGGCCA	1 cut(s)	2898
Mly113I	GGCGCC	1 cut(s)	153
MlyI	GAGTC	5 cut(s)	473, 590, 653, 1097, 2384
MmeI	TCCRAC	7 cut(s)	557, 759, 1125, 1125, 1268, 1966, 2148
Mox20I	TGGCCA	1 cut(s)	2898
Mph1103I	ATGCAT	2 cut(s)	2324, 2530
MreI	CGCCGGCG	3 cut(s)	110, 149, 155
MroNI	GCCGGC	3 cut(s)	110, 149, 155
MroXI	GAANNNNTTC	2 cut(s)	738, 3112
MscI	TGGCCA	1 cut(s)	2898
MslI	CAYNNNNRTG	2 cut(s)	509, 1467
Msp20I	TGGCCA	1 cut(s)	2898
MspA1I	CMGCKG	2 cut(s)	181, 918
MspCI	CTTAAG	1 cut(s)	2069
MspI	CCGG	8 cut(s)	111, 139, 150, 156, 323, 422, 1330, 3035
MspR9I	CCNGG	2 cut(s)	1331, 1864
MvaI	CCWGG	1 cut(s)	1864
MvnI	CGCG	2 cut(s)	72, 181
NaeI	GCCGGC	3 cut(s)	112, 151, 157
NarI	GGCGCC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	1331
NdeI	CATATG	1 cut(s)	1468
NgoMIV	GCCGGC	3 cut(s)	110, 149, 155
NlaIV	GGNNCC	4 cut(s)	86, 143, 154, 1878
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	4 cut(s)	238, 541, 613, 645
NsiI	ATGCAT	2 cut(s)	2324, 2530
NspI	RCATGY	9 cut(s)	748, 959, 1386, 1596, 1707, 1925, 2022, 2335, 2361
NspV	TTCGAA	2 cut(s)	2798, 3100
OliI	CACNNNNGTG	1 cut(s)	509
PaeI	GCATGC	3 cut(s)	1596, 1707, 1925
PaeR7I	CTCGAG	1 cut(s)	560
PciI	ACATGT	3 cut(s)	744, 955, 1382
PcsI	WCGNNNNNNNCGW	1 cut(s)	473
PdiI	GCCGGC	3 cut(s)	112, 151, 157
PdmI	GAANNNNTTC	2 cut(s)	738, 3112
PflFI	GACNNNGTC	1 cut(s)	2190
PflMI	CCANNNNNTGG	3 cut(s)	1432, 2037, 3026
PfoI	TCCNGGA	1 cut(s)	1329
PleI	GAGTC	5 cut(s)	472, 590, 652, 1097, 2384
PluTI	GGCGCC	1 cut(s)	156
PmaCI	CACGTG	2 cut(s)	1736, 2957
PmlI	CACGTG	2 cut(s)	1736, 2957
PpsI	GAGTC	5 cut(s)	472, 590, 652, 1097, 2384
Ppu21I	YACGTR	2 cut(s)	1736, 2957
PscI	ACATGT	3 cut(s)	744, 955, 1382
PshAI	GACNNNNGTC	1 cut(s)	539
PshBI	ATTAAT	1 cut(s)	1904
Psp124BI	GAGCTC	1 cut(s)	2058
Psp6I	CCWGG	1 cut(s)	1862
PspCI	CACGTG	2 cut(s)	1736, 2957
PspFI	CCCAGC	4 cut(s)	1499, 1916, 3054, 3064
PspGI	CCWGG	1 cut(s)	1862
PspN4I	GGNNCC	4 cut(s)	86, 143, 154, 1878
PspPI	GGNCC	1 cut(s)	1876
PspXI	VCTCGAGB	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	432
PsuI	RGATCY	2 cut(s)	2065, 2345
PsyI	GACNNNGTC	1 cut(s)	2190
RsaI	GTAC	3 cut(s)	862, 1255, 2362
RsaNI	GTAC	3 cut(s)	861, 1254, 2361
RseI	CAYNNNNRTG	2 cut(s)	509, 1467
SacI	GAGCTC	1 cut(s)	2058
SacII	CCGCGG	1 cut(s)	182
Sau96I	GGNCC	1 cut(s)	1876
ScaI	AGTACT	1 cut(s)	862
SchI	GAGTC	5 cut(s)	473, 590, 653, 1097, 2384
ScrFI	CCNGG	2 cut(s)	1331, 1864
SduI	GDGCHC	7 cut(s)	89, 1011, 1291, 1477, 1693, 1735, 2058
SfcI	CTRYAG	5 cut(s)	428, 864, 1662, 2144, 2829
SfoI	GGCGCC	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	560
Sfr303I	CCGCGG	1 cut(s)	182
SfuI	TTCGAA	2 cut(s)	2798, 3100
SgrAI	CRCCGGYG	3 cut(s)	110, 149, 155
SgrBI	CCGCGG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	1876
SlaI	CTCGAG	1 cut(s)	560
SmiMI	CAYNNNNRTG	2 cut(s)	509, 1467
SmlI	CTYRAG	5 cut(s)	560, 1290, 2069, 2274, 2648
SmoI	CTYRAG	5 cut(s)	560, 1290, 2069, 2274, 2648
SphI	GCATGC	3 cut(s)	1596, 1707, 1925
SspDI	GGCGCC	1 cut(s)	152
SspI	AATATT	1 cut(s)	3097
SspMI	CTAG	3 cut(s)	1934, 2249, 2933
SstI	GAGCTC	1 cut(s)	2058
StyD4I	CCNGG	2 cut(s)	1329, 1862
StyI	CCWWGG	3 cut(s)	2856, 2941, 3117
TaiI	ACGT	4 cut(s)	166, 245, 1738, 2959
TaqI	TCGA	8 cut(s)	215, 561, 573, 1075, 1564, 1972, 2798, 3100
TatI	WGTACW	3 cut(s)	860, 1253, 2360
TauI	GCSGC	6 cut(s)	72, 117, 178, 181, 523, 2386
TseFI	GTSAC	4 cut(s)	238, 541, 613, 645
TseI	GCWGC	9 cut(s)	1589, 1812, 1940, 2512, 2657, 2789, 2803, 2909, 3088
Tsp45I	GTSAC	4 cut(s)	238, 541, 613, 645
TspGWI	ACGGA	2 cut(s)	551, 2356
Tth111I	GACNNNGTC	1 cut(s)	2190
Van91I	CCANNNNNTGG	3 cut(s)	1432, 2037, 3026
Vha464I	CTTAAG	1 cut(s)	2069
VneI	GTGCAC	1 cut(s)	1689
VpaK11BI	GGWCC	1 cut(s)	1876
VspI	ATTAAT	1 cut(s)	1904
XapI	RAATTY	2 cut(s)	2844, 3109
XbaI	TCTAGA	1 cut(s)	2248
XceI	RCATGY	9 cut(s)	748, 959, 1386, 1596, 1707, 1925, 2022, 2335, 2361
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1870, 2221
XhoI	CTCGAG	1 cut(s)	560
XmiI	GTMKAC	3 cut(s)	264, 1404, 2748
XmnI	GAANNNNTTC	2 cut(s)	738, 3112
XspI	CTAG	3 cut(s)	1934, 2249, 2933
ZraI	GACGTC	1 cut(s)	164
ZrmI	AGTACT	1 cut(s)	862
Zsp2I	ATGCAT	2 cut(s)	2324, 2530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.