Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018378.1

Orthogroup ID

OG0004157

Physical Location & Seq

Genomic Coordinates Forward (+)

26090 .. 28987

Gene Structure 2898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018378.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ctggagctctatgaggatcttaagtcagctaaaattgagcagactgtttcaactgtcaatgctttgattactgccctatgtgatggggatcaactacagaaggctatggaagttctgtcggaaatgaagagtataggactgcgtccaaacagtataacatactccatacttgtagtggcaagtgaaaagaaggatgatctagaagctggcctgatgctcctttctcaagctgaaaaggataaagttgttccaaaccttgtcatgtgtagaagatgcattataggcatgtgcttacggagatctgagaaggcatgtacactgggtgaaactgtcttgccgcttgactcaggccgaccgcaagttgatagtaaatgggcatcagtggccttaatggtctatcggaaaactattgtcgctggtgctactcctaccattgaaattatatcacaagttttgggatgcttgcagctcccttatgatgcgtcatttaagaagagagttattgagaatcttggtgtaactgccgacacttcaagaccttcaaaactcttttcattgatagatgggtttggtgaatatgatcctcgtgcattttcattacttgaggaagctgcttcacttggaattgttccatgtgtatccttcaaagttaatcccattgttgttgatgcaaagaagttgcaacttcatactgctaaggtctacatcttgactgttctgagaggtctcaaacatcggcttgctgctggttcgaagttgcccaacatgaccattttactgcctgtagaaaagacgcaaattttgtctcccaaggggaagatgaagacaatctacctttcaggaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

282

Amino Acids

30.87

Weight (kDa)

9.07

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34830
fragaria_vesca	FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240
malus_domestica	MD05G1113900.v1.1
prunus_persica	Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1
pyrus_communis	pycom05g10870 pycom10g10060
rosa_chinensis	RchiOBHm_Chr6g0245931
rosa_laevigata	RLG00000015285
rosa_multiflora	Rmu_co8211740.1_g000001 Rmu_sc0005570.1_g000001 Rmu_sc0018377.1_g000001 Rmu_sc0018378.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215060
rosa_rugosa	Rorug05G0517500
rosa_samantha	Rh6AG031800 Rh6BG028200 Rh6CG028200 Rh6DG027500
rosa_wichuraiana	Rw6G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	2 cut(s)	338, 356
AclWI	GGATC	3 cut(s)	24, 96, 575
AcsI	RAATTY	1 cut(s)	798
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	316
AflII	CTTAAG	1 cut(s)	20
AgsI	TTSAA	5 cut(s)	51, 437, 534, 543, 646
AluBI	AGCT	6 cut(s)	7, 29, 206, 230, 469, 611
AluI	AGCT	6 cut(s)	7, 29, 206, 230, 469, 611
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	731, 810
AlwI	GGATC	3 cut(s)	24, 96, 575
AoxI	GGCC	3 cut(s)	208, 349, 384
ApeKI	GCWGC	3 cut(s)	466, 611, 743
ApoI	RAATTY	1 cut(s)	798
ArsI	GACNNNNNNTTYG	2 cut(s)	784, 816
AsuHPI	GGTGA	2 cut(s)	335, 584
AsuII	TTCGAA	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	2 cut(s)	815, 847
BauI	CACGAG	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	830
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	3 cut(s)	478, 598, 730
BccI	CCATC	2 cut(s)	77, 557
BciVI	GTATCC	1 cut(s)	649
BcoDI	GTCTC	2 cut(s)	731, 810
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	95, 783
BfrI	CTTAAG	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	299
BisI	GCNGC	4 cut(s)	338, 467, 612, 744
BlsI	GCNGC	4 cut(s)	339, 468, 613, 745
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	6 cut(s)	204, 263, 386, 449, 469, 658
BmuI	ACTGGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	830
BpmI	CTGGAG	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	696
Bpu14I	TTCGAA	1 cut(s)	752
BpuEI	CTTGAG	2 cut(s)	210, 623
BsaBI	GATNNNNATC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	731
BsaJI	CCNNGG	1 cut(s)	810
Bse1I	ACTGG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	810
BseGI	GGATG	2 cut(s)	199, 464
BseJI	GATNNNNATC	1 cut(s)	87
BseMII	CTCAG	3 cut(s)	294, 360, 710
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	478, 598, 730
Bsh1285I	CGRYCG	1 cut(s)	356
BshFI	GGCC	3 cut(s)	210, 351, 386
BsiEI	CGRYCG	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	9
BsmAI	GTCTC	2 cut(s)	731, 810
BsnI	GGCC	3 cut(s)	210, 351, 386
Bso31I	GGTCTC	1 cut(s)	731
Bsp119I	TTCGAA	1 cut(s)	752
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp1407I	TGTACA	1 cut(s)	314
Bsp143I	GATC	5 cut(s)	16, 88, 196, 299, 580
BspACI	CCGC	2 cut(s)	338, 356
BspANI	GGCC	3 cut(s)	210, 351, 386
BspCNI	CTCAG	3 cut(s)	295, 359, 711
BspPI	GGATC	3 cut(s)	24, 96, 575
BspT104I	TTCGAA	1 cut(s)	752
BspTI	CTTAAG	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	731
BsrGI	TGTACA	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	810
BssMI	GATC	5 cut(s)	16, 88, 196, 299, 580
BssSI	CACGAG	1 cut(s)	585
BssT1I	CCWWGG	1 cut(s)	810
Bst2BI	CACGAG	1 cut(s)	585
Bst4CI	ACNGT	5 cut(s)	46, 55, 152, 331, 715
Bst6I	CTCTTC	2 cut(s)	122, 488
BstAFI	CTTAAG	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	314
BstBI	TTCGAA	1 cut(s)	752
BstC8I	GCNNGC	3 cut(s)	208, 464, 741
BstDEI	CTNAG	4 cut(s)	303, 346, 696, 719
BstF5I	GGATG	2 cut(s)	199, 464
BstKTI	GATC	5 cut(s)	19, 91, 199, 302, 583
BstMAI	GTCTC	2 cut(s)	731, 810
BstMBI	GATC	5 cut(s)	16, 88, 196, 299, 580
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 383
BstNSI	RCATGY	2 cut(s)	289, 315
BstSFI	CTRYAG	2 cut(s)	95, 783
BstV1I	GCAGC	3 cut(s)	478, 598, 730
BstV2I	GAAGAC	1 cut(s)	830
BstX2I	RGATCY	2 cut(s)	16, 299
BstYI	RGATCY	2 cut(s)	16, 299
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	210, 351, 386
BtsCI	GGATG	2 cut(s)	199, 464
BtsIMutI	CAGTG	2 cut(s)	317, 387
Cac8I	GCNNGC	3 cut(s)	208, 464, 741
CseI	GACGC	3 cut(s)	131, 471, 802
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	5 cut(s)	262, 286, 312, 633, 766
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	4 cut(s)	303, 346, 696, 719
DpnI	GATC	5 cut(s)	18, 90, 198, 301, 582
DpnII	GATC	5 cut(s)	16, 88, 196, 299, 580
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	2 cut(s)	122, 488
EarI	CTCTTC	2 cut(s)	122, 488
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	810
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	731
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	810
EcoT22I	ATGCAT	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	5 cut(s)	265, 289, 315, 636, 769
FatI	CATG	5 cut(s)	261, 285, 311, 632, 765
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	4 cut(s)	338, 467, 612, 744
FokI	GGATG	2 cut(s)	206, 471
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	4 cut(s)	338, 467, 612, 744
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	4 cut(s)	338, 467, 612, 744
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	3 cut(s)	210, 351, 386
HgaI	GACGC	3 cut(s)	131, 471, 802
Hin1II	CATG	5 cut(s)	265, 289, 315, 636, 769
HinfI	GANTC	2 cut(s)	344, 508
HphI	GGTGA	2 cut(s)	335, 584
Hpy166II	GTNNAC	2 cut(s)	317, 703
Hpy188I	TCNGA	4 cut(s)	121, 304, 402, 720
Hpy188III	TCNNGA	4 cut(s)	200, 534, 709, 840
Hpy8I	GTNNAC	2 cut(s)	317, 703
HpyAV	CCTTC	6 cut(s)	94, 184, 301, 549, 652, 837
HpyCH4III	ACNGT	5 cut(s)	46, 55, 152, 331, 715
HpyCH4V	TGCA	5 cut(s)	276, 466, 590, 671, 682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 383
HpyF3I	CTNAG	4 cut(s)	303, 346, 696, 719
Hsp92II	CATG	5 cut(s)	265, 289, 315, 636, 769
Kzo9I	GATC	5 cut(s)	16, 88, 196, 299, 580
LmnI	GCTCC	3 cut(s)	4, 222, 474
LpnPI	CCDG	8 cut(s)	192, 224, 305, 333, 402, 732, 795, 825
Lsp1109I	GCAGC	3 cut(s)	478, 598, 730
LweI	GCATC	6 cut(s)	204, 263, 386, 449, 469, 658
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	5 cut(s)	18, 90, 198, 301, 582
MboI	GATC	5 cut(s)	16, 88, 196, 299, 580
MboII	GAAGA	5 cut(s)	139, 282, 505, 829, 835
MflI	RGATCY	2 cut(s)	16, 299
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	4 cut(s)	33, 438, 624, 798
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	4 cut(s)	7, 594, 598, 716
Mph1103I	ATGCAT	1 cut(s)	278
MseI	TTAA	4 cut(s)	21, 389, 489, 651
MspCI	CTTAAG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	282, 383
NdeII	GATC	5 cut(s)	16, 88, 196, 299, 580
NlaIII	CATG	5 cut(s)	265, 289, 315, 636, 769
NsiI	ATGCAT	1 cut(s)	278
NspI	RCATGY	2 cut(s)	289, 315
NspV	TTCGAA	1 cut(s)	752
PfeI	GAWTC	1 cut(s)	508
PflFI	GACNNNGTC	1 cut(s)	141
PkrI	GCNGC	4 cut(s)	339, 468, 613, 745
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	9
PsuI	RGATCY	2 cut(s)	16, 299
PsyI	GACNNNGTC	1 cut(s)	141
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	4 cut(s)	21, 389, 489, 651
SatI	GCNGC	4 cut(s)	338, 467, 612, 744
Sau3AI	GATC	5 cut(s)	16, 88, 196, 299, 580
SchI	GAGTC	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	6 cut(s)	204, 263, 386, 449, 469, 658
SfcI	CTRYAG	2 cut(s)	95, 783
SfuI	TTCGAA	1 cut(s)	752
SmlI	CTYRAG	3 cut(s)	20, 225, 602
SmoI	CTYRAG	3 cut(s)	20, 225, 602
Sse9I	AATT	4 cut(s)	33, 438, 624, 798
SsiI	CCGC	2 cut(s)	338, 356
SspMI	CTAG	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	5 cut(s)	46, 55, 152, 331, 715
TaqI	TCGA	1 cut(s)	752
TasI	AATT	4 cut(s)	33, 438, 624, 798
TatI	WGTACW	1 cut(s)	314
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	4 cut(s)	21, 389, 489, 651
Tru9I	TTAA	4 cut(s)	21, 389, 489, 651
TscAI	CASTG	2 cut(s)	324, 387
TseI	GCWGC	3 cut(s)	466, 611, 743
TspDTI	ATGAA	5 cut(s)	140, 543, 585, 677, 836
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	324, 387
Tth111I	GACNNNGTC	1 cut(s)	141
Vha464I	CTTAAG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	798
XbaI	TCTAGA	1 cut(s)	199
XceI	RCATGY	2 cut(s)	289, 315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.