Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004157

Physical Location & Seq

Genomic Coordinates Forward (+)

3903143 .. 3911359

Gene Structure 8217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG031800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3117 bp

ATGAGCTTCTCCGCAAAGCCACAGCCACTCGCCCTAATCTCATGCACGCCTCACTCCCGCTCCCTCCGCCGCGACTTCCTCGGGTGCCCCCACAGCCTCCGCCCACTCGCCGGCGGCCTCAGGTCTCTGCGAAAGAACCGGAGCCTCGCCGGCCCCGGCGGACGTCAGAATCCGCCGCCGCGGTTGTTGATTAAAGCGTCGCTCGGTTCTCACCCGATTCTGGTGTTCGTCGCCGTGGTGACGTTCTCGGCGGTTTCTATTGTCTACTTCAATCGGTCGGTGAAGCGGAAGAAGAGAGAGGTTGGAGGTGAAGTTGAAGTTCCGGTGGAAGATCAGAGTATTGATTTTGATGCTTTGAAAGATGAGATTAGAGAGGCGAGGGAGGAGGAAGAGGCTTCTTCTTCTTCTTCTCCGGTTCTGCAGTTTCACAATTCGTCTGTGATATCTGCTCAGGAGTCGTCGTCGTCGTCTCTTTCACCTTTGGTGTTTGAATCAACGGCTGTGCTTCAGCCGCTTCATTTTCCGACGGAAGTCACTGAGTTTGATAAACTCGAGCCTCTTTTCGAGTTGCCGAATCTGATGGGGGACTCTGATTTTGGTTCTGTGACTGTGAGTGATGAGGAAACCGTCACCGAATCACCTTCTGTGTCCGGAAGTGATGAGGAGAGCAGTGAGGTTGGTGAAGCTAATGGCTTTGGATTACGTAATGGAGAATCGGATAGAGAAGAGATTCACATGTTCTATGAGGCCAACAAGTCTGAGATGAAGTTGGATGATGATAAATTTTCTTCGTTTCTGAGAAATAGCACCCTCACAAGATCAGATTCGTTTCGACAAGTTTCGCATCACAGTACTACAGAGAATGTAGAAGGCAAAATACCCAATCACAAAGAAGGCCATGTCCGCAGCAGAAAAGACTTGGGAAACGGCAATGGATATAATGGACATGTAGCAGATAAAGAACTAAGACATTTGCCTAAAAAGAACCATAAGACTGTGCCCCAACCGAATGGAATACATACAAGCGACACACATTATGTTTCCGAGCAATTAAGTGCTTACCATCGATTGCTGAAGGATGGGAGGTTATCCGACTCTTTAAAATTGCTTGAAGATTTGGAGAAAAAGGATTTGTTGGATATGAATAAGGTTTATCATGGAAGGTTTTTTGAAACCTGCAAAAAGAAAAAGGCTGTTGATCAAGCTTTTCGTTTCATCAAACTGATTCCAAATCCAACAATGAGTACACATAATATGCTTATGTCTGTCTGTGCGAGTGCTCAAGATTCAGAGGGTGCTTTCAATGTTCTGGGACTTGTCCGGGAGGCTGGGCTAAGAGTTGATTGCAAACTTTACACTACTCTGATATCAACATGTGCGAAAAGTGGAAAAGTCTACACTATGTTTGATGTCTTCCATGAGATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACTGATTGATGGTTGTGGCAGAGCTGGGGAAGTGGCAAAGGCATTTGGTGCTTATGGGATAATGAGGTCTAAGAAAGTGAAGCCAGATCGAGTTGTATTCAATGCGCTTATTACTGCATGCGGTCAATCAGGAGCAGTTGACCGTGCTTTTGATGTCTTAGAAGAAATGAAGGCAGAGACACAGCCTATAGAACCTGATCACACAACTGTTGGCGCACTAATAAAAGCATGTGCAAATGCTGGTCAGGTTGAAAGGGCACGTGAAGTGTATAAGATGATTCATAAATACAAGATTAAGGGTAGTTCTGAGGTTTACACCATAGCTGTTAATTGTTGCAGCCTGACTGGTGATTGGGACTTTGCTTGCACTGTATATGATGACATGACCAGGAATGGTGTGGTCCCTGATGAGATGTTCCTCAGTGCATTAATAGATGTTGCTGGGCATGCTGGAAAGCTAGATGCTGCCTTTGAAATCATACAGGAAGCCAGAAATCGAGGAATACAAGTTGGAACTGTATCATATAGCTCATTGATGGGCGCATGTAGCAATGCCAAAAATTGGCAGAAAGCACTGGAGCTCTATGAGGACCTTAAGTCAGCTAAAATTGAGCAGACTGTTTCAACTGTCAATGCTTTGATTACTGCCCTATGTGATGGGGATCAACTACAGAAGGCTATGGAAGTTCTGTCGGAAATGAAGCGTATAGGACTGCGTCCAAACAGTATAACATACTCCATACTTGTAGTGGCAAGTGAAAAGAAGGATGATCTAGAAGCTGGCCTGATGCTCCTTTCTCAAGCTGAAAAGGATAAAGTTGTTCCAAACCTTGTCATGTGTAGATGCATTATAGGCATGTGCTTACGGAGATCTGAGAAGGCATGTACACTGGGTGAAACTGTCTTGCCGCTTGACTCAGGCCGACCGCAAGTTGATAGTAAATGGGCATCAGTGGCCTTAATGGTCTATCGGAAAACTATCGTAGCTGGTGCTACTCCTACCATTGAAATTATATCAAAAGTTTTGGGATGCTTGCAGCTCCCTTATGATGCATCATTTAAGAAGAGAGTTATTGAGAATCTTGGTGTAACTGCCGACACTTCAAGACCTTCAAAACTCTGTTCATTGATAGATGGGTTTGGTGAATATGATCCTCGTGCATTTTCATTACTTGAGGAAGCTGCTTCACTTGGAATTGTTCCATGTGTATCCTTCAAAGTTAATCCCATTGTTGTTGATGCAAAGAAGTTGCAACTTCATACTGCTAAGGTCTACATCTTGACTGTTCTGAGAGGTCTCAAACATCGGCTTGCTGCTGGTTCGAAGTTGCCCAACATGACCATTTTACTGCCTGTAGAAAAGACGCAAATTTTGTCTCCCAAGGGGAAGATGAAGACAATCTACCTTTCAGGAAGGGTTGGCCAGTCAGTTGCAGCATTATTGAGAAGGCTTGGGCTAGATTACCAAGGAAATGAATCACGTGGAAAGATAAGAATCAGTGGGTTAACCATGAAAAGATGGTTTCAGCCAAAACTTGCTTCACCATTCACTGGGAAACCGGAAGAATTAGGCTCATCCCAGCTACGGCTGGGGAAAGGAATCATGCATCAACAGCGCAATATTCGAACTGGAAATTTTTCCTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043488 GO:0043489 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1038

Amino Acids

114.07

Weight (kDa)

8.44

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	417 - 586	1.5e-17	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	441 - 495	1.5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	451 - 495	3.9e-12	PPR repeat family
TPR_24	PF23276	455 - 581	6.4e-15	Fungal tetratrico peptide repeats
PPR_3	PF13812	471 - 531	1.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	479 - 504	2.6e-06	PPR repeat
PPR_1	PF12854	514 - 546	8.9e-07	PPR repeat
PPR_2	PF13041	517 - 568	8e-09	PPR repeat family
TPR_24	PF23276	575 - 686	4.6e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	592 - 744	1.9e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	648 - 706	1.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	660 - 708	2e-08	PPR repeat family
PPR_3	PF13812	683 - 738	2.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	695 - 738	2.3e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34830
fragaria_vesca	FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240 FvH4_2g02240
malus_domestica	MD05G1113900.v1.1
prunus_persica	Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1 Prupe.8G158300_v2.0.a1
pyrus_communis	pycom05g10870 pycom10g10060
rosa_chinensis	RchiOBHm_Chr6g0245931
rosa_laevigata	RLG00000015285
rosa_multiflora	Rmu_co8211740.1_g000001 Rmu_sc0005570.1_g000001 Rmu_sc0018377.1_g000001 Rmu_sc0018378.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215060
rosa_rugosa	Rorug05G0517500
rosa_samantha	Rh6AG031800 Rh6BG028200 Rh6CG028200 Rh6DG027500
rosa_wichuraiana	Rw6G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
Acc36I	ACCTGC	1 cut(s)	1184
AccB1I	GGYRCC	1 cut(s)	84
AccB7I	CCANNNNNTGG	3 cut(s)	1423, 2028, 3017
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	3 cut(s)	264, 1395, 2739
AccII	CGCG	2 cut(s)	72, 181
AccIII	TCCGGA	1 cut(s)	650
AclWI	GGATC	2 cut(s)	2136, 2612
AcoI	YGGCCR	1 cut(s)	2887
AcsI	RAATTY	3 cut(s)	782, 2835, 3100
AcuI	CTGAAG	2 cut(s)	491, 1094
AcvI	CACGTG	2 cut(s)	1727, 2948
AcyI	GRCGYC	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	2360
AfaI	GTAC	3 cut(s)	853, 1246, 2353
AfiI	CCNNNNNNNGG	6 cut(s)	110, 220, 1423, 2028, 3017, 3051
AflII	CTTAAG	1 cut(s)	2060
AflIII	ACRYGT	3 cut(s)	735, 946, 1373
AhdI	GACNNNNNGTC	1 cut(s)	2062
AjnI	CCWGG	1 cut(s)	1853
AjuI	GAANNNNNNNTTGG	2 cut(s)	2989, 3021
Alw21I	GWGCWC	2 cut(s)	1282, 2049
Alw26I	GTCTC	5 cut(s)	129, 474, 1637, 2768, 2847
AlwI	GGATC	2 cut(s)	2136, 2612
Ama87I	CYCGRG	2 cut(s)	80, 551
Aor13HI	TCCGGA	1 cut(s)	650
AoxI	GGCC	8 cut(s)	115, 151, 747, 895, 2248, 2386, 2421, 2887
ApeKI	GCWGC	7 cut(s)	906, 1803, 1931, 2503, 2648, 2780, 2900
ApoI	RAATTY	3 cut(s)	782, 2835, 3100
ArsI	GACNNNNNNTTYG	6 cut(s)	578, 610, 1598, 1630, 2821, 2853
AseI	ATTAAT	1 cut(s)	1895
Asp700I	GAANNNNTTC	2 cut(s)	729, 3103
AspLEI	GCGC	4 cut(s)	1573, 1682, 2009, 3084
AspS9I	GGNCC	3 cut(s)	152, 1867, 2056
AsuC2I	CCSGG	2 cut(s)	156, 1322
AsuII	TTCGAA	2 cut(s)	2789, 3091
AvaI	CYCGRG	2 cut(s)	80, 551
AvaII	GGWCC	2 cut(s)	1867, 2056
AxyI	CCTNAGG	1 cut(s)	119
BaeGI	GKGCMC	4 cut(s)	89, 1002, 1468, 1726
BalI	TGGCCA	1 cut(s)	2889
BanI	GGYRCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	2049
BarI	GAAGNNNNNNTAC	4 cut(s)	861, 893, 2852, 2884
BauI	CACGAG	1 cut(s)	2622
BbrPI	CACGTG	2 cut(s)	1727, 2948
BbsI	GAAGAC	2 cut(s)	1405, 2867
Bbv12I	GWGCWC	2 cut(s)	1282, 2049
BbvI	GCAGC	7 cut(s)	918, 1815, 1918, 2515, 2635, 2767, 2912
BccI	CCATC	9 cut(s)	574, 1071, 1073, 1417, 1469, 1996, 2117, 2594, 2979
BceAI	ACGGC	4 cut(s)	218, 513, 943, 3068
BciT130I	CCWGG	1 cut(s)	1855
BciVI	GTATCC	1 cut(s)	2686
BclI	TGATCA	2 cut(s)	1198, 1663
BcnI	CCSGG	2 cut(s)	156, 1322
BcoDI	GTCTC	5 cut(s)	129, 474, 1637, 2768, 2847
BfaI	CTAG	3 cut(s)	1925, 2240, 2924
BfmI	CTRYAG	5 cut(s)	419, 855, 1653, 2135, 2820
BfrI	CTTAAG	1 cut(s)	2060
BfuAI	ACCTGC	1 cut(s)	1184
BfuI	GTATCC	1 cut(s)	2686
BglI	GCCNNNNNGGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	2336
BmcAI	AGTACT	1 cut(s)	853
Bme1390I	CCNGG	3 cut(s)	156, 1322, 1855
Bme18I	GGWCC	2 cut(s)	1867, 2056
BmeRI	GACNNNNNGTC	1 cut(s)	2062
BmeT110I	CYCGRG	2 cut(s)	80, 551
BmgT120I	GGNCC	3 cut(s)	152, 1867, 2056
BmiI	GGNNCC	4 cut(s)	86, 143, 154, 1869
BmrFI	CCNGG	3 cut(s)	156, 1322, 1855
BmrI	ACTGGG	2 cut(s)	2366, 3027
BmuI	ACTGGG	2 cut(s)	2366, 3027
BoxI	GACNNNNGTC	1 cut(s)	530
BpiI	GAAGAC	2 cut(s)	1405, 2867
BpmI	CTGGAG	2 cut(s)	1455, 2063
Bpu10I	CCTNAGC	2 cut(s)	450, 2733
Bpu14I	TTCGAA	2 cut(s)	2789, 3091
BpuEI	CTTGAG	3 cut(s)	1266, 2250, 2660
BpuMI	CCSGG	2 cut(s)	156, 1322
Bsa29I	ATCGAT	1 cut(s)	1066
BsaAI	YACGTR	3 cut(s)	704, 1727, 2948
BsaBI	GATNNNNATC	2 cut(s)	2127, 2960
BsaHI	GRCGYC	1 cut(s)	163
BsaI	GGTCTC	2 cut(s)	129, 2768
BsaJI	CCNNGG	7 cut(s)	79, 154, 179, 234, 2847, 2932, 3108
BsaWI	WCCGGW	5 cut(s)	138, 322, 412, 650, 3025
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 297, 327, 446, 476
Bsc4I	CCNNNNNNNGG	6 cut(s)	110, 220, 1423, 2028, 3017, 3051
Bse118I	RCCGGY	2 cut(s)	110, 149
Bse1I	ACTGG	6 cut(s)	1816, 2046, 2361, 2890, 3022, 3100
Bse21I	CCTNAGG	1 cut(s)	119
Bse3DI	GCAATG	2 cut(s)	937, 2023
Bse8I	GATNNNNATC	2 cut(s)	2127, 2960
BseAI	TCCGGA	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	1855
BseCI	ATCGAT	1 cut(s)	1066
BseDI	CCNNGG	7 cut(s)	79, 154, 179, 234, 2847, 2932, 3108
BseGI	GGATG	5 cut(s)	778, 1084, 2239, 2501, 3041
BseJI	GATNNNNATC	2 cut(s)	2127, 2960
BseLI	CCNNNNNNNGG	6 cut(s)	110, 220, 1423, 2028, 3017, 3051
BseMI	GCAATG	2 cut(s)	937, 2023
BseNI	ACTGG	6 cut(s)	1816, 2046, 2361, 2890, 3022, 3100
BseRI	GAGGAG	2 cut(s)	398, 677
BseSI	GKGCMC	4 cut(s)	89, 1002, 1468, 1726
BseXI	GCAGC	7 cut(s)	918, 1815, 1918, 2515, 2635, 2767, 2912
BseYI	CCCAGC	5 cut(s)	1328, 1490, 1907, 3045, 3055
Bsh1236I	CGCG	2 cut(s)	72, 181
Bsh1285I	CGRYCG	2 cut(s)	278, 2393
BshFI	GGCC	8 cut(s)	117, 153, 749, 897, 2250, 2388, 2423, 2889
BshNI	GGYRCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	1066
BsiEI	CGRYCG	2 cut(s)	278, 2393
BsiHKAI	GWGCWC	2 cut(s)	1282, 2049
BsiHKCI	CYCGRG	2 cut(s)	80, 551
BsiSI	CCGG	9 cut(s)	111, 139, 150, 156, 323, 413, 651, 1321, 3026
BslFI	GGGAC	4 cut(s)	599, 1326, 1835, 1853
BslI	CCNNNNNNNGG	6 cut(s)	110, 220, 1423, 2028, 3017, 3051
BsmAI	GTCTC	5 cut(s)	129, 474, 1637, 2768, 2847
BsmBI	CGTCTC	1 cut(s)	474
BsmFI	GGGAC	4 cut(s)	599, 1326, 1835, 1853
BsnI	GGCC	8 cut(s)	117, 153, 749, 897, 2250, 2388, 2423, 2889
Bso31I	GGTCTC	2 cut(s)	129, 2768
BsoBI	CYCGRG	2 cut(s)	80, 551
Bsp119I	TTCGAA	2 cut(s)	2789, 3091
Bsp1286I	GDGCHC	6 cut(s)	89, 1002, 1282, 1468, 1726, 2049
Bsp13I	TCCGGA	1 cut(s)	650
Bsp1407I	TGTACA	1 cut(s)	2351
Bsp143I	GATC	9 cut(s)	331, 818, 1198, 1552, 1663, 2128, 2236, 2336, 2617
BspANI	GGCC	8 cut(s)	117, 153, 749, 897, 2250, 2388, 2423, 2889
BspDI	ATCGAT	1 cut(s)	1066
BspEI	TCCGGA	1 cut(s)	650
BspFNI	CGCG	2 cut(s)	72, 181
BspLI	GGNNCC	4 cut(s)	86, 143, 154, 1869
BspMAI	CTGCAG	1 cut(s)	423
BspMI	ACCTGC	1 cut(s)	1184
BspPI	GGATC	2 cut(s)	2136, 2612
BspT104I	TTCGAA	2 cut(s)	2789, 3091
BspT107I	GGYRCC	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	2060
BspTNI	GGTCTC	2 cut(s)	129, 2768
BsrBI	CCGCTC	1 cut(s)	60
BsrDI	GCAATG	2 cut(s)	937, 2023
BsrFI	RCCGGY	2 cut(s)	110, 149
BsrGI	TGTACA	1 cut(s)	2351
BsrI	ACTGG	6 cut(s)	1816, 2046, 2361, 2890, 3022, 3100
BssAI	RCCGGY	2 cut(s)	110, 149
BssECI	CCNNGG	7 cut(s)	79, 154, 179, 234, 2847, 2932, 3108
BssMI	GATC	9 cut(s)	331, 818, 1198, 1552, 1663, 2128, 2236, 2336, 2617
BssNI	GRCGYC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	2622
BssT1I	CCWWGG	3 cut(s)	2847, 2932, 3108
Bst2BI	CACGAG	1 cut(s)	2622
Bst2UI	CCWGG	1 cut(s)	1855
Bst6I	CTCTTC	4 cut(s)	287, 384, 720, 2525
BstACI	GRCGYC	1 cut(s)	163
BstAFI	CTTAAG	1 cut(s)	2060
BstAPI	GCANNNNNTGC	1 cut(s)	1514
BstAUI	TGTACA	1 cut(s)	2351
BstBAI	YACGTR	3 cut(s)	704, 1727, 2948
BstBI	TTCGAA	2 cut(s)	2789, 3091
BstC8I	GCNNGC	9 cut(s)	47, 112, 151, 1585, 1831, 1914, 2248, 2501, 2778
BstDSI	CCRYGG	2 cut(s)	179, 234
BstF5I	GGATG	5 cut(s)	778, 1084, 2239, 2501, 3041
BstFNI	CGCG	2 cut(s)	72, 181
BstHHI	GCGC	4 cut(s)	1573, 1682, 2009, 3084
BstKTI	GATC	9 cut(s)	334, 821, 1201, 1555, 1666, 2131, 2239, 2339, 2620
BstMAI	GTCTC	5 cut(s)	129, 474, 1637, 2768, 2847
BstMBI	GATC	9 cut(s)	331, 818, 1198, 1552, 1663, 2128, 2236, 2336, 2617
BstMCI	CGRYCG	2 cut(s)	278, 2393
BstNI	CCWGG	1 cut(s)	1855
BstNSI	RCATGY	9 cut(s)	739, 950, 1377, 1587, 1698, 1916, 2013, 2326, 2352
BstPAI	GACNNNNGTC	1 cut(s)	530
BstSCI	CCNGG	3 cut(s)	154, 1320, 1853
BstSFI	CTRYAG	5 cut(s)	419, 855, 1653, 2135, 2820
BstSLI	GKGCMC	4 cut(s)	89, 1002, 1468, 1726
BstSNI	TACGTA	1 cut(s)	704
BstUI	CGCG	2 cut(s)	72, 181
BstV1I	GCAGC	7 cut(s)	918, 1815, 1918, 2515, 2635, 2767, 2912
BstV2I	GAAGAC	2 cut(s)	1405, 2867
BstX2I	RGATCY	1 cut(s)	2336
BstXI	CCANNNNNNTGG	1 cut(s)	1010
BstYI	RGATCY	1 cut(s)	2336
Bsu15I	ATCGAT	1 cut(s)	1066
Bsu36I	CCTNAGG	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	2686
BsuRI	GGCC	8 cut(s)	117, 153, 749, 897, 2250, 2388, 2423, 2889
BsuTUI	ATCGAT	1 cut(s)	1066
BtgI	CCRYGG	2 cut(s)	179, 234
BtsCI	GGATG	5 cut(s)	778, 1084, 2239, 2501, 3041
BtsI	GCAGTG	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	1184
Cac8I	GCNNGC	9 cut(s)	47, 112, 151, 1585, 1831, 1914, 2248, 2501, 2778
CfoI	GCGC	4 cut(s)	1573, 1682, 2009, 3084
Cfr10I	RCCGGY	2 cut(s)	110, 149
Cfr13I	GGNCC	3 cut(s)	152, 1867, 2056
Cfr42I	CCGCGG	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	1066
CseI	GACGC	3 cut(s)	186, 2171, 2839
Csp6I	GTAC	3 cut(s)	852, 1245, 2352
CviQI	GTAC	3 cut(s)	852, 1245, 2352
DpnI	GATC	9 cut(s)	333, 820, 1200, 1554, 1665, 2130, 2238, 2338, 2619
DpnII	GATC	9 cut(s)	331, 818, 1198, 1552, 1663, 2128, 2236, 2336, 2617
DraI	TTTAAA	1 cut(s)	1101
DraIII	CACNNNGTG	1 cut(s)	2360
DriI	GACNNNNNGTC	1 cut(s)	2062
EaeI	YGGCCR	1 cut(s)	2887
Eam1104I	CTCTTC	4 cut(s)	287, 384, 720, 2525
Eam1105I	GACNNNNNGTC	1 cut(s)	2062
EarI	CTCTTC	4 cut(s)	287, 384, 720, 2525
EciI	GGCGGA	4 cut(s)	56, 89, 162, 174
Ecl136II	GAGCTC	1 cut(s)	2047
Eco105I	TACGTA	1 cut(s)	704
Eco130I	CCWWGG	3 cut(s)	2847, 2932, 3108
Eco24I	GRGCYC	1 cut(s)	2049
Eco31I	GGTCTC	2 cut(s)	129, 2768
Eco32I	GATATC	2 cut(s)	444, 1368
Eco47I	GGWCC	2 cut(s)	1867, 2056
Eco53kI	GAGCTC	1 cut(s)	2047
Eco57I	CTGAAG	2 cut(s)	491, 1094
Eco72I	CACGTG	2 cut(s)	1727, 2948
Eco81I	CCTNAGG	1 cut(s)	119
Eco88I	CYCGRG	2 cut(s)	80, 551
EcoICRI	GAGCTC	1 cut(s)	2047
EcoO109I	RGGNCCY	1 cut(s)	2056
EcoRII	CCWGG	1 cut(s)	1853
EcoRV	GATATC	2 cut(s)	444, 1368
EcoT14I	CCWWGG	3 cut(s)	2847, 2932, 3108
EcoT22I	ATGCAT	3 cut(s)	2315, 2521, 3075
EcoT38I	GRGCYC	1 cut(s)	2049
ErhI	CCWWGG	3 cut(s)	2847, 2932, 3108
Esp3I	CGTCTC	1 cut(s)	474
FaqI	GGGAC	4 cut(s)	599, 1326, 1835, 1853
FauI	CCCGC	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	1459
FbaI	TGATCA	2 cut(s)	1198, 1663
FblI	GTMKAC	3 cut(s)	264, 1395, 2739
FokI	GGATG	5 cut(s)	785, 1091, 2246, 2508, 3028
FriOI	GRGCYC	1 cut(s)	2049
FspBI	CTAG	3 cut(s)	1925, 2240, 2924
GlaI	GCGC	4 cut(s)	1572, 1681, 2008, 3083
GsaI	CCCAGC	5 cut(s)	1332, 1494, 1911, 3049, 3059
GsuI	CTGGAG	2 cut(s)	1455, 2063
HaeIII	GGCC	8 cut(s)	117, 153, 749, 897, 2250, 2388, 2423, 2889
HapII	CCGG	9 cut(s)	111, 139, 150, 156, 323, 413, 651, 1321, 3026
HgaI	GACGC	3 cut(s)	186, 2171, 2839
HhaI	GCGC	4 cut(s)	1573, 1682, 2009, 3084
Hin1I	GRCGYC	1 cut(s)	163
Hin6I	GCGC	4 cut(s)	1571, 1680, 2007, 3082
HinP1I	GCGC	4 cut(s)	1571, 1680, 2007, 3082
HincII	GTYRAC	2 cut(s)	1606, 2973
HindII	GTYRAC	2 cut(s)	1606, 2973
HindIII	AAGCTT	1 cut(s)	1203
HpaI	GTTAAC	1 cut(s)	2973
HpaII	CCGG	9 cut(s)	111, 139, 150, 156, 323, 413, 651, 1321, 3026
Hpy166II	GTNNAC	9 cut(s)	265, 1247, 1396, 1453, 1606, 1780, 2354, 2740, 2973
Hpy188III	TCNNGA	8 cut(s)	452, 651, 1283, 1596, 2240, 2571, 2746, 2877
Hpy8I	GTNNAC	9 cut(s)	265, 1247, 1396, 1453, 1606, 1780, 2354, 2740, 2973
Hpy99I	CGWCG	6 cut(s)	202, 233, 463, 466, 469, 529
HpyCH4IV	ACGT	5 cut(s)	163, 242, 703, 1726, 2947
HpySE526I	ACGT	5 cut(s)	163, 242, 703, 1726, 2947
Hsp92I	GRCGYC	1 cut(s)	163
HspAI	GCGC	4 cut(s)	1571, 1680, 2007, 3082
Kpn2I	TCCGGA	1 cut(s)	650
KroI	GCCGGC	2 cut(s)	110, 149
KroNI	GCCGGC	2 cut(s)	112, 151
Ksp22I	TGATCA	2 cut(s)	1198, 1663
KspAI	GTTAAC	1 cut(s)	2973
KspI	CCGCGG	1 cut(s)	182
Kzo9I	GATC	9 cut(s)	331, 818, 1198, 1552, 1663, 2128, 2236, 2336, 2617
LmnI	GCTCC	6 cut(s)	65, 141, 1598, 2044, 2262, 2511
Lsp1109I	GCAGC	7 cut(s)	918, 1815, 1918, 2515, 2635, 2767, 2912
MaeI	CTAG	3 cut(s)	1925, 2240, 2924
MaeII	ACGT	5 cut(s)	163, 242, 703, 1726, 2947
MaeIII	GTNAC	5 cut(s)	238, 532, 604, 628, 2554
MalI	GATC	9 cut(s)	333, 820, 1200, 1554, 1665, 2130, 2238, 2338, 2619
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	9 cut(s)	331, 818, 1198, 1552, 1663, 2128, 2236, 2336, 2617
MflI	RGATCY	1 cut(s)	2336
MhlI	GDGCHC	6 cut(s)	89, 1002, 1282, 1468, 1726, 2049
MlsI	TGGCCA	1 cut(s)	2889
MluNI	TGGCCA	1 cut(s)	2889
MlyI	GAGTC	4 cut(s)	464, 581, 1088, 2375
MmeI	TCCRAC	8 cut(s)	283, 548, 750, 1116, 1116, 1259, 1957, 2139
Mox20I	TGGCCA	1 cut(s)	2889
Mph1103I	ATGCAT	3 cut(s)	2315, 2521, 3075
MreI	CGCCGGCG	1 cut(s)	110
MroI	TCCGGA	1 cut(s)	650
MroNI	GCCGGC	2 cut(s)	110, 149
MroXI	GAANNNNTTC	2 cut(s)	729, 3103
MscI	TGGCCA	1 cut(s)	2889
MslI	CAYNNNNRTG	1 cut(s)	1458
Msp20I	TGGCCA	1 cut(s)	2889
MspA1I	CMGCKG	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	2060
MspI	CCGG	9 cut(s)	111, 139, 150, 156, 323, 413, 651, 1321, 3026
MspR9I	CCNGG	3 cut(s)	156, 1322, 1855
MvaI	CCWGG	1 cut(s)	1855
MvnI	CGCG	2 cut(s)	72, 181
NaeI	GCCGGC	2 cut(s)	112, 151
NciI	CCSGG	2 cut(s)	156, 1322
NdeI	CATATG	1 cut(s)	1459
NdeII	GATC	9 cut(s)	331, 818, 1198, 1552, 1663, 2128, 2236, 2336, 2617
NgoMIV	GCCGGC	2 cut(s)	110, 149
NlaIV	GGNNCC	4 cut(s)	86, 143, 154, 1869
NmeAIII	GCCGAG	1 cut(s)	227
NmuCI	GTSAC	4 cut(s)	238, 532, 604, 628
NsiI	ATGCAT	3 cut(s)	2315, 2521, 3075
NspI	RCATGY	9 cut(s)	739, 950, 1377, 1587, 1698, 1916, 2013, 2326, 2352
NspV	TTCGAA	2 cut(s)	2789, 3091
PaeI	GCATGC	2 cut(s)	1587, 1916
PaeR7I	CTCGAG	1 cut(s)	551
PciI	ACATGT	3 cut(s)	735, 946, 1373
PcsI	WCGNNNNNNNCGW	1 cut(s)	464
PdiI	GCCGGC	2 cut(s)	112, 151
PdmI	GAANNNNTTC	2 cut(s)	729, 3103
PflFI	GACNNNGTC	1 cut(s)	2181
PflMI	CCANNNNNTGG	3 cut(s)	1423, 2028, 3017
PfoI	TCCNGGA	1 cut(s)	1320
PleI	GAGTC	4 cut(s)	463, 581, 1088, 2375
PmaCI	CACGTG	2 cut(s)	1727, 2948
PmlI	CACGTG	2 cut(s)	1727, 2948
PpsI	GAGTC	4 cut(s)	463, 581, 1088, 2375
Ppu21I	YACGTR	3 cut(s)	704, 1727, 2948
PpuMI	RGGWCCY	1 cut(s)	2056
PscI	ACATGT	3 cut(s)	735, 946, 1373
PshAI	GACNNNNGTC	1 cut(s)	530
PshBI	ATTAAT	1 cut(s)	1895
Psp124BI	GAGCTC	1 cut(s)	2049
Psp5II	RGGWCCY	1 cut(s)	2056
Psp6I	CCWGG	1 cut(s)	1853
PspCI	CACGTG	2 cut(s)	1727, 2948
PspFI	CCCAGC	5 cut(s)	1328, 1490, 1907, 3045, 3055
PspGI	CCWGG	1 cut(s)	1853
PspN4I	GGNNCC	4 cut(s)	86, 143, 154, 1869
PspPI	GGNCC	3 cut(s)	152, 1867, 2056
PspPPI	RGGWCCY	1 cut(s)	2056
PspXI	VCTCGAGB	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	2336
PsyI	GACNNNGTC	1 cut(s)	2181
RsaI	GTAC	3 cut(s)	853, 1246, 2353
RsaNI	GTAC	3 cut(s)	852, 1245, 2352
RseI	CAYNNNNRTG	1 cut(s)	1458
SacI	GAGCTC	1 cut(s)	2049
SacII	CCGCGG	1 cut(s)	182
Sau3AI	GATC	9 cut(s)	331, 818, 1198, 1552, 1663, 2128, 2236, 2336, 2617
Sau96I	GGNCC	3 cut(s)	152, 1867, 2056
ScaI	AGTACT	1 cut(s)	853
SchI	GAGTC	4 cut(s)	464, 581, 1088, 2375
ScrFI	CCNGG	3 cut(s)	156, 1322, 1855
SduI	GDGCHC	6 cut(s)	89, 1002, 1282, 1468, 1726, 2049
SfcI	CTRYAG	5 cut(s)	419, 855, 1653, 2135, 2820
Sfr274I	CTCGAG	1 cut(s)	551
Sfr303I	CCGCGG	1 cut(s)	182
SfuI	TTCGAA	2 cut(s)	2789, 3091
SgrAI	CRCCGGYG	1 cut(s)	110
SgrBI	CCGCGG	1 cut(s)	182
SinI	GGWCC	2 cut(s)	1867, 2056
SlaI	CTCGAG	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	1458
SmlI	CTYRAG	5 cut(s)	551, 1281, 2060, 2265, 2639
SmoI	CTYRAG	5 cut(s)	551, 1281, 2060, 2265, 2639
SnaBI	TACGTA	1 cut(s)	704
SphI	GCATGC	2 cut(s)	1587, 1916
SspI	AATATT	1 cut(s)	3088
SspMI	CTAG	3 cut(s)	1925, 2240, 2924
SstI	GAGCTC	1 cut(s)	2049
StyD4I	CCNGG	3 cut(s)	154, 1320, 1853
StyI	CCWWGG	3 cut(s)	2847, 2932, 3108
TaiI	ACGT	5 cut(s)	166, 245, 706, 1729, 2950
TaqI	TCGA	8 cut(s)	552, 564, 832, 1066, 1555, 1963, 2789, 3091
TaqII	GACCGA	1 cut(s)	264
TatI	WGTACW	3 cut(s)	851, 1244, 2351
TauI	GCSGC	6 cut(s)	72, 117, 178, 181, 514, 2377
TseFI	GTSAC	4 cut(s)	238, 532, 604, 628
TseI	GCWGC	7 cut(s)	906, 1803, 1931, 2503, 2648, 2780, 2900
Tsp45I	GTSAC	4 cut(s)	238, 532, 604, 628
TspGWI	ACGGA	2 cut(s)	542, 2347
Tth111I	GACNNNGTC	1 cut(s)	2181
Van91I	CCANNNNNTGG	3 cut(s)	1423, 2028, 3017
Vha464I	CTTAAG	1 cut(s)	2060
VpaK11BI	GGWCC	2 cut(s)	1867, 2056
VspI	ATTAAT	1 cut(s)	1895
XapI	RAATTY	3 cut(s)	782, 2835, 3100
XbaI	TCTAGA	1 cut(s)	2239
XceI	RCATGY	9 cut(s)	739, 950, 1377, 1587, 1698, 1916, 2013, 2326, 2352
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1861, 2212
XhoI	CTCGAG	1 cut(s)	551
XmiI	GTMKAC	3 cut(s)	264, 1395, 2739
XmnI	GAANNNNTTC	2 cut(s)	729, 3103
XspI	CTAG	3 cut(s)	1925, 2240, 2924
ZraI	GACGTC	1 cut(s)	164
ZrmI	AGTACT	1 cut(s)	853
Zsp2I	ATGCAT	3 cut(s)	2315, 2521, 3075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.