Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001023

Physical Location & Seq

Genomic Coordinates Forward (+)

16675377 .. 16678206

Gene Structure 2830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35030.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGTGAAGAAAAGAGGAGAATTTCAGGAAGATCAGTTTCACTTCCATCGATAGACATATTACTAGACGAGAAACCAGGTTGGCCATTTCTTAAAAGAGCAAGTTTAGGGACACCACAACAAGTTCACAAATGGCACACACGAAAAGTCTCAGTGGTCAATTGGGTCATGAGCTTACCTGAACGGTTTCCAAATCATCAACAGACTCTAAACTATGAGACAAGCTTGATAAAGAAACAAATCAAGGACATATTGAGAGACAATAACAAATGGTTCAACTACAATGTTCTTAGGAAAGCAACATCAGATTTCTCTCAAGAGAATGTGATTGGGAAAGGAGGATGCAACGAAGTGTACCGAGGGATTCTTGAAGATGGAAAAGGCATTGCAGTGAAAATCTTGAAGTCATCATCTAAAGAAGCAATGACAAATTTCGTTCATGAAATCAACATTATCTCTTCTTTGAGTCACCAAAACATCTCACCGTTACTTGGTGTTTGTGTCCAAGACAATGAACTAATCTCCGTTTACAATCTTTCAAACACAGGAAGTTTAGAAGAAACCCTTCACGGTAAGCAAAAGGGAAAGTATGTATTATCATGGGAAGAGAGATTCAAGATAGCTATCGGGTTGGCGGAAGCATTAGACTATCTTCATAACCGATGTTCTAAGCCAGTGATTCATAGAGATGTCAAAACTTCTAACGTCCTTCTATCACTTGAGCTCCAACCTCAGGTAATCTGTCAGATTTTGGTCTGTCGATGTGGGGACCGACAACATCTTCTCGATATTCGATACAAGGTGATGTGGTGGGAACATTTGGATATCTTGCACCGGAGTACTTCATGTATGGAAAAGTCAGTGATAAAGTTGATGTTTACGCCTTTGGAGTGGTTCTGCTTGAACTCATTTCTGGAAGAAATCCTATTTCACCTCAGAATCCTAGAGGACAAGAGAGTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

321

Amino Acids

37.22

Weight (kDa)

8.91

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	105 - 374	3.3e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	106 - 323	3.9e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16750 AT2G16750 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030
fragaria_vesca	FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g38170 FvH4_2g38170
malus_domestica	MD05G1121300.v1.1 MD08G1010200.v1.1 MD15G1010100.v1.1
prunus_persica	Prupe.1G362600_v2.0.a1 Prupe.8G165200_v2.0.a1 Prupe.8G165200_v2.0.a1
pyrus_communis	pycom05g11550 pycom10g10680 pycom15g00830
rosa_chinensis	RchiOBHm_Chr6g0251891 RchiOBHm_Chr6g0303311
rosa_laevigata	RLG00000011093 RLG00000015422
rosa_multiflora	Rmu_sc0007252.1_g000005 Rmu_sc0027227.1_g000001 Rmu_ssc0000303.1_g000011
rosa_roxburghii	Rroxscaffold_7G00164880 Rroxscaffold_7G00216330
rosa_rugosa	Rorug05G0504900 Rorug05G0504900 Rorug06G0320200 Rorug06G0320300 Rorug06G0320300 Rorug06G0320300 Rorug06G0320300
rosa_samantha	Rh6AG016000 Rh6AG434700 Rh6BG014000 Rh6BG468400 Rh6CG010900 Rh6CG446700 Rh6DG012100 Rh6DG433500
rosa_wichuraiana	Rw6G001530 Rw6G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	2 cut(s)	21, 430
AfaI	GTAC	2 cut(s)	356, 841
AfiI	CCNNNNNNNGG	2 cut(s)	491, 733
AgsI	TTSAA	6 cut(s)	277, 371, 403, 540, 616, 904
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	4 cut(s)	174, 225, 623, 724
AluI	AGCT	4 cut(s)	174, 225, 623, 724
Alw21I	GWGCWC	1 cut(s)	726
Alw26I	GTCTC	3 cut(s)	154, 212, 252
AoxI	GGCC	1 cut(s)	83
ApoI	RAATTY	2 cut(s)	21, 430
Asp700I	GAANNNNTTC	2 cut(s)	186, 564
AspS9I	GGNCC	1 cut(s)	769
AsuHPI	GGTGA	5 cut(s)	17, 461, 474, 814, 923
AvaII	GGWCC	1 cut(s)	769
AxyI	CCTNAGG	1 cut(s)	732
BalI	TGGCCA	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	726
BccI	CCATC	2 cut(s)	55, 368
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	3 cut(s)	154, 212, 252
BfaI	CTAG	2 cut(s)	65, 944
BmcAI	AGTACT	1 cut(s)	841
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	769
BmgT120I	GGNCC	1 cut(s)	769
BmiI	GGNNCC	1 cut(s)	770
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	332
BpuEI	CTTGAG	2 cut(s)	300, 740
Bsa29I	ATCGAT	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	623
BsaJI	CCNNGG	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	834
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	2 cut(s)	491, 733
Bse1I	ACTGG	1 cut(s)	674
Bse21I	CCTNAGG	1 cut(s)	732
Bse3DI	GCAATG	2 cut(s)	384, 429
Bse8I	GATNNNNATC	1 cut(s)	623
BseBI	CCWGG	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	1 cut(s)	347
BseJI	GATNNNNATC	1 cut(s)	623
BseLI	CCNNNNNNNGG	2 cut(s)	491, 733
BseMI	GCAATG	2 cut(s)	384, 429
BseMII	CTCAG	3 cut(s)	165, 746, 949
BseNI	ACTGG	1 cut(s)	674
BseRI	GAGGAG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	85
BshVI	ATCGAT	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	726
BsiSI	CCGG	1 cut(s)	835
BslFI	GGGAC	2 cut(s)	124, 782
BslI	CCNNNNNNNGG	2 cut(s)	491, 733
BsmAI	GTCTC	3 cut(s)	154, 212, 252
BsmFI	GGGAC	2 cut(s)	124, 782
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	726
Bsp143I	GATC	1 cut(s)	32
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	3 cut(s)	164, 745, 948
BspDI	ATCGAT	1 cut(s)	50
BspHI	TCATGA	2 cut(s)	168, 439
BspLI	GGNNCC	1 cut(s)	770
BsrDI	GCAATG	2 cut(s)	384, 429
BsrI	ACTGG	1 cut(s)	674
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	186, 486, 572
Bst6I	CTCTTC	2 cut(s)	463, 600
BstDEI	CTNAG	5 cut(s)	151, 290, 669, 732, 935
BstF5I	GGATG	1 cut(s)	347
BstKTI	GATC	1 cut(s)	35
BstMAI	GTCTC	3 cut(s)	154, 212, 252
BstMBI	GATC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	50
Bsu36I	CCTNAGG	1 cut(s)	732
BsuRI	GGCC	1 cut(s)	85
BsuTUI	ATCGAT	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	347
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	4 cut(s)	159, 396, 681, 867
CciI	TCATGA	2 cut(s)	168, 439
Cfr13I	GGNCC	1 cut(s)	769
ClaI	ATCGAT	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	355, 840
CviAII	CATG	4 cut(s)	169, 440, 600, 846
CviJI	RGCY	6 cut(s)	85, 174, 225, 623, 673, 724
CviKI_1	RGCY	6 cut(s)	85, 174, 225, 623, 673, 724
CviQI	GTAC	2 cut(s)	355, 840
DdeI	CTNAG	5 cut(s)	151, 290, 669, 732, 935
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	83
Eam1104I	CTCTTC	2 cut(s)	463, 600
EarI	CTCTTC	2 cut(s)	463, 600
EciI	GGCGGA	1 cut(s)	650
Ecl136II	GAGCTC	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	726
Eco32I	GATATC	1 cut(s)	826
Eco47I	GGWCC	1 cut(s)	769
Eco53kI	GAGCTC	1 cut(s)	724
Eco81I	CCTNAGG	1 cut(s)	732
EcoICRI	GAGCTC	1 cut(s)	724
EcoRII	CCWGG	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	826
EcoT38I	GRGCYC	1 cut(s)	726
FaeI	CATG	4 cut(s)	172, 443, 603, 849
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	2 cut(s)	124, 782
FatI	CATG	4 cut(s)	168, 439, 599, 845
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	726
FspBI	CTAG	2 cut(s)	65, 944
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	835
Hin1II	CATG	4 cut(s)	172, 443, 603, 849
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	6 cut(s)	205, 364, 466, 612, 679, 939
HpaII	CCGG	1 cut(s)	835
HphI	GGTGA	5 cut(s)	17, 461, 474, 814, 923
Hpy166II	GTNNAC	4 cut(s)	127, 355, 529, 879
Hpy188I	TCNGA	3 cut(s)	307, 747, 938
Hpy188III	TCNNGA	9 cut(s)	27, 169, 317, 368, 400, 440, 616, 785, 914
Hpy8I	GTNNAC	4 cut(s)	127, 355, 529, 879
HpyAV	CCTTC	2 cut(s)	575, 719
HpyCH4III	ACNGT	3 cut(s)	186, 486, 572
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	3 cut(s)	345, 389, 832
HpyF3I	CTNAG	5 cut(s)	151, 290, 669, 732, 935
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	4 cut(s)	172, 443, 603, 849
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	729
LpnPI	CCDG	9 cut(s)	12, 63, 90, 192, 531, 687, 719, 848, 899
LweI	GCATC	1 cut(s)	332
MabI	ACCWGGT	1 cut(s)	76
MaeI	CTAG	2 cut(s)	65, 944
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	2 cut(s)	467, 486
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	9 cut(s)	20, 42, 383, 450, 569, 617, 644, 773, 929
MfeI	CAATTG	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	726
MlsI	TGGCCA	1 cut(s)	85
MluCI	AATT	3 cut(s)	21, 160, 430
MluNI	TGGCCA	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	199, 475
MmeI	TCCRAC	1 cut(s)	751
MnlI	CCTC	6 cut(s)	9, 332, 353, 741, 940, 944
Mox20I	TGGCCA	1 cut(s)	85
MroXI	GAANNNNTTC	2 cut(s)	186, 564
MscI	TGGCCA	1 cut(s)	85
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	2 cut(s)	389, 687
Msp20I	TGGCCA	1 cut(s)	85
MspI	CCGG	1 cut(s)	835
MspR9I	CCNGG	1 cut(s)	78
MunI	CAATTG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	4 cut(s)	172, 443, 603, 849
NlaIV	GGNNCC	1 cut(s)	770
NmuCI	GTSAC	1 cut(s)	467
PagI	TCATGA	2 cut(s)	168, 439
PdmI	GAANNNNTTC	2 cut(s)	186, 564
PfeI	GAWTC	4 cut(s)	364, 612, 679, 939
PleI	GAGTC	2 cut(s)	199, 474
PpsI	GAGTC	2 cut(s)	199, 474
Psp124BI	GAGCTC	1 cut(s)	726
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	770
PspPI	GGNCC	1 cut(s)	769
RsaI	GTAC	2 cut(s)	356, 841
RsaNI	GTAC	2 cut(s)	355, 840
RseI	CAYNNNNRTG	2 cut(s)	389, 687
SacI	GAGCTC	1 cut(s)	726
SaqAI	TTAA	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	32
Sau96I	GGNCC	1 cut(s)	769
ScaI	AGTACT	1 cut(s)	841
SchI	GAGTC	2 cut(s)	199, 475
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	726
SexAI	ACCWGGT	1 cut(s)	76
SfaNI	GCATC	1 cut(s)	332
SinI	GGWCC	1 cut(s)	769
SmiMI	CAYNNNNRTG	2 cut(s)	389, 687
SmlI	CTYRAG	2 cut(s)	315, 719
SmoI	CTYRAG	2 cut(s)	315, 719
Sse9I	AATT	3 cut(s)	21, 160, 430
SsiI	CCGC	1 cut(s)	635
SspMI	CTAG	2 cut(s)	65, 944
SstI	GAGCTC	1 cut(s)	726
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	3 cut(s)	186, 486, 572
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	4 cut(s)	50, 760, 786, 793
TaqII	GACCGA	1 cut(s)	786
TasI	AATT	3 cut(s)	21, 160, 430
TatI	WGTACW	1 cut(s)	839
TfiI	GAWTC	4 cut(s)	364, 612, 679, 939
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	4 cut(s)	159, 396, 681, 867
TseFI	GTSAC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	6 cut(s)	428, 456, 528, 644, 671, 834
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	4 cut(s)	159, 396, 681, 867
VpaK11BI	GGWCC	1 cut(s)	769
XapI	RAATTY	2 cut(s)	21, 430
XmnI	GAANNNNTTC	2 cut(s)	186, 564
XspI	CTAG	2 cut(s)	65, 944
ZrmI	AGTACT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.