Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001023

Physical Location & Seq

Genomic Coordinates Forward (+)

62490152 .. 62495218

Gene Structure 5067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG446700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGGATCATGACCAAGAAGCGGAATTCATCGGAATCTGATAGAGGTTGGTTAAGTTGCGATATGTCAGAATCAACTTTTGGCTGGCCCCTTCAGAAAGTAACTGTTCCTATGGAGACTCAGGGAGCTTGTGAAAAATCAGATGATGATTCGAAGAGTTGGGAGGTTGAAGAAGATGAATATGCATCACCTTTATCAAGGCCTGGTTGGCCTCTCCTTCGTGTAGCAACCTCCGAAACCATGAGTACTCCTGGTAGAAAGTTTGAAGCTAAAGATGTGTCTGTAGTCGAGTGGGTGATGGGACTTCCTAGTCGATCAACCTCAGTCAATCTGCAGCTTGCTAATGAATTGAAGTTCCTCATTAAGAAAAACTCACAAGGTTGCAGGATGTTTAGCTACGCCGAAATAAGGACTGCAACTTCTCAATTCTCCTCAGATAATCTTATCGGAGAGGGAGGGTGCAGCAGTGTGTACAGAGGAGTTCTCCGATGTGGGAAATCCGTGGCGGTGAAGATTTTGAAAGTATACAAGGAAGCTTGGGATGATTTTTGCTTGGAAGCCAAATTTGTGTCTTCAATTAAGCATAAGCATATAGTATCTCTCATTGGCGTGTGTGAGGAAGATGAGAATCTTGTTCTAGTCTATGAGCTCTTTCCTAGGGGGAGTTTGGAGGAGAACTTGCATGATTGTAATGATGGTTCTGTACTGCCATGGGAAGTGAGATTCAACGTGGCAGTTGCAGTTGGTGAGGCTCTAAATTATCTACACAATGAGTGCCCTCAGCCGATTATTCATAGAGACGTAAAATCTGCAAACATTCTTCTCTCAAGTGATCATCAGCCACAGTTATCAGATTTTGGGCTTGCTATATGGGGATCAGTGGATTCTAGTTATGTAACAAGTAATGATGTGGTGGGAACTTTCGGATACATGGCTCCAGAGTATTTCATGCAAGGGAGGGTCAGTGACAAGGTTGATGTGTACGCCTTTGGTGTAGTTCTCCTTGAACTACTATCAGGAAGAAAGCCAGTTGATGTTGAGGCTCCAAAAGGACAAGAGAGCTTGATCGAGTGGGTAAGAACTCTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0032870 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

363

Amino Acids

40.52

Weight (kDa)

5.07

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	145 - 347	8e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	146 - 345	1.7e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16750 AT2G16750 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030
fragaria_vesca	FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g38170 FvH4_2g38170
malus_domestica	MD05G1121300.v1.1 MD08G1010200.v1.1 MD15G1010100.v1.1
prunus_persica	Prupe.1G362600_v2.0.a1 Prupe.8G165200_v2.0.a1 Prupe.8G165200_v2.0.a1
pyrus_communis	pycom05g11550 pycom10g10680 pycom15g00830
rosa_chinensis	RchiOBHm_Chr6g0251891 RchiOBHm_Chr6g0303311
rosa_laevigata	RLG00000011093 RLG00000015422
rosa_multiflora	Rmu_sc0007252.1_g000005 Rmu_sc0027227.1_g000001 Rmu_ssc0000303.1_g000011
rosa_roxburghii	Rroxscaffold_7G00164880 Rroxscaffold_7G00216330
rosa_rugosa	Rorug05G0504900 Rorug05G0504900 Rorug06G0320200 Rorug06G0320300 Rorug06G0320300 Rorug06G0320300 Rorug06G0320300
rosa_samantha	Rh6AG016000 Rh6AG434700 Rh6BG014000 Rh6BG468400 Rh6CG010900 Rh6CG446700 Rh6DG012100 Rh6DG433500
rosa_wichuraiana	Rw6G001530 Rw6G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	525
AciI	CCGC	2 cut(s)	22, 506
AclWI	GGATC	2 cut(s)	14, 883
AcsI	RAATTY	2 cut(s)	25, 563
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	4 cut(s)	247, 473, 705, 983
AfiI	CCNNNNNNNGG	2 cut(s)	21, 408
AgsI	TTSAA	7 cut(s)	170, 266, 352, 520, 576, 727, 1007
AjnI	CCWGG	2 cut(s)	202, 250
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	7 cut(s)	128, 269, 337, 396, 536, 649, 1062
AluI	AGCT	7 cut(s)	128, 269, 337, 396, 536, 649, 1062
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	2 cut(s)	110, 792
AlwI	GGATC	2 cut(s)	14, 883
AoxI	GGCC	3 cut(s)	86, 200, 209
ApeKI	GCWGC	2 cut(s)	334, 462
ApoI	RAATTY	2 cut(s)	25, 563
AspA2I	CCTAGG	1 cut(s)	656
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	4 cut(s)	180, 307, 520, 758
AsuII	TTCGAA	1 cut(s)	152
AvrII	CCTAGG	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	779
BanII	GRGCYC	1 cut(s)	651
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	651
BbvCI	CCTCAGC	1 cut(s)	780
BbvI	GCAGC	2 cut(s)	346, 474
BccI	CCATC	2 cut(s)	292, 689
BciT130I	CCWGG	2 cut(s)	204, 252
BciVI	GTATCC	1 cut(s)	920
BclI	TGATCA	1 cut(s)	832
BcoDI	GTCTC	2 cut(s)	110, 792
BfaI	CTAG	4 cut(s)	309, 638, 657, 888
BfmI	CTRYAG	2 cut(s)	282, 332
BfuI	GTATCC	1 cut(s)	920
BglI	GCCNNNNNGGC	1 cut(s)	208
BisI	GCNGC	2 cut(s)	335, 463
BlnI	CCTAGG	1 cut(s)	656
BlsI	GCNGC	2 cut(s)	336, 464
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	2 cut(s)	204, 252
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	3 cut(s)	89, 936, 1044
BmrFI	CCNGG	2 cut(s)	204, 252
BmsI	GCATC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	564
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
BpmI	CTGGAG	1 cut(s)	921
Bpu10I	CCTNAGC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	811
BsaBI	GATNNNNATC	1 cut(s)	627
BsaJI	CCNNGG	3 cut(s)	501, 656, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	949, 979
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 408
Bse1I	ACTGG	1 cut(s)	1028
Bse8I	GATNNNNATC	1 cut(s)	627
BseBI	CCWGG	2 cut(s)	204, 252
BseDI	CCNNGG	3 cut(s)	501, 656, 710
BseGI	GGATG	2 cut(s)	393, 547
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	2 cut(s)	21, 408
BseMII	CTCAG	4 cut(s)	134, 336, 447, 794
BseNI	ACTGG	1 cut(s)	1028
BseRI	GAGGAG	3 cut(s)	421, 492, 686
BseSI	GKGCMC	1 cut(s)	779
BseXI	GCAGC	2 cut(s)	346, 474
BsgI	GTGCAG	1 cut(s)	481
BshFI	GGCC	3 cut(s)	88, 202, 211
BsiHKAI	GWGCWC	1 cut(s)	651
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	21, 408
BsmAI	GTCTC	2 cut(s)	110, 792
BsmBI	CGTCTC	1 cut(s)	792
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	88, 202, 211
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	651, 779
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	5 cut(s)	6, 314, 832, 875, 1065
Bsp19I	CCATGG	1 cut(s)	710
BspACI	CCGC	2 cut(s)	22, 506
BspANI	GGCC	3 cut(s)	88, 202, 211
BspCNI	CTCAG	4 cut(s)	133, 335, 446, 793
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	3 cut(s)	89, 936, 1044
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	2 cut(s)	14, 883
BspT104I	TTCGAA	1 cut(s)	152
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	1028
BssECI	CCNNGG	3 cut(s)	501, 656, 710
BssMI	GATC	5 cut(s)	6, 314, 832, 875, 1065
BssNAI	GTATAC	1 cut(s)	526
BssT1I	CCWWGG	2 cut(s)	656, 710
Bst1107I	GTATAC	1 cut(s)	526
Bst2UI	CCWGG	2 cut(s)	204, 252
Bst4CI	ACNGT	2 cut(s)	106, 846
Bst6I	CTCTTC	1 cut(s)	149
BstAUI	TGTACA	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	86, 339, 864
BstDEI	CTNAG	5 cut(s)	120, 322, 433, 780, 1089
BstDSI	CCRYGG	2 cut(s)	501, 710
BstF5I	GGATG	2 cut(s)	393, 547
BstKTI	GATC	5 cut(s)	9, 317, 835, 878, 1068
BstMAI	GTCTC	2 cut(s)	110, 792
BstMBI	GATC	5 cut(s)	6, 314, 832, 875, 1065
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNI	CCWGG	2 cut(s)	204, 252
BstSCI	CCNGG	2 cut(s)	202, 250
BstSFI	CTRYAG	2 cut(s)	282, 332
BstSLI	GKGCMC	1 cut(s)	779
BstV1I	GCAGC	2 cut(s)	346, 474
BstV2I	GAAGAC	1 cut(s)	564
BstZ17I	GTATAC	1 cut(s)	526
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	3 cut(s)	88, 202, 211
BtgI	CCRYGG	2 cut(s)	501, 710
BtsCI	GGATG	2 cut(s)	393, 547
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	3 cut(s)	472, 885, 970
Cac8I	GCNNGC	3 cut(s)	86, 339, 864
CciI	TCATGA	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	4 cut(s)	246, 472, 704, 982
CviAII	CATG	6 cut(s)	10, 241, 683, 711, 931, 949
CviQI	GTAC	4 cut(s)	246, 472, 704, 982
DdeI	CTNAG	5 cut(s)	120, 322, 433, 780, 1089
DpnI	GATC	5 cut(s)	8, 316, 834, 877, 1067
DpnII	GATC	5 cut(s)	6, 314, 832, 875, 1065
DrdI	GACNNNNNNGTC	1 cut(s)	309
DseDI	GACNNNNNNGTC	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Ecl136II	GAGCTC	1 cut(s)	649
Eco130I	CCWWGG	2 cut(s)	656, 710
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	651
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	202, 250
EcoT14I	CCWWGG	2 cut(s)	656, 710
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	2 cut(s)	656, 710
Esp3I	CGTCTC	1 cut(s)	792
FaeI	CATG	6 cut(s)	13, 244, 686, 714, 934, 952
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	6 cut(s)	9, 240, 682, 710, 930, 948
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	2 cut(s)	335, 463
FokI	GGATG	2 cut(s)	400, 554
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	2 cut(s)	335, 463
FspBI	CTAG	4 cut(s)	309, 638, 657, 888
GluI	GCNGC	2 cut(s)	335, 463
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	3 cut(s)	88, 202, 211
Hin1II	CATG	6 cut(s)	13, 244, 686, 714, 934, 952
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	7 cut(s)	35, 71, 118, 149, 628, 723, 884
HphI	GGTGA	4 cut(s)	180, 307, 520, 758
Hpy166II	GTNNAC	3 cut(s)	472, 526, 982
Hpy188III	TCNNGA	3 cut(s)	10, 938, 1017
Hpy8I	GTNNAC	3 cut(s)	472, 526, 982
HpyAV	CCTTC	2 cut(s)	101, 227
HpyCH4III	ACNGT	2 cut(s)	106, 846
HpyCH4IV	ACGT	2 cut(s)	729, 801
HpyCH4V	TGCA	9 cut(s)	185, 334, 384, 416, 462, 682, 740, 812, 952
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	5 cut(s)	120, 322, 433, 780, 1089
HpySE526I	ACGT	2 cut(s)	729, 801
Hsp92II	CATG	6 cut(s)	13, 244, 686, 714, 934, 952
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	5 cut(s)	6, 314, 832, 875, 1065
LmnI	GCTCC	3 cut(s)	125, 940, 1048
Lsp1109I	GCAGC	2 cut(s)	346, 474
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	4 cut(s)	309, 638, 657, 888
MaeII	ACGT	2 cut(s)	729, 801
MaeIII	GTNAC	3 cut(s)	100, 895, 965
MalI	GATC	5 cut(s)	8, 316, 834, 877, 1067
MboI	GATC	5 cut(s)	6, 314, 832, 875, 1065
MboII	GAAGA	8 cut(s)	166, 182, 185, 523, 564, 632, 812, 1032
MhlI	GDGCHC	2 cut(s)	651, 779
MluCI	AATT	6 cut(s)	25, 347, 425, 563, 576, 757
MlyI	GAGTC	1 cut(s)	112
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	3 cut(s)	53, 363, 579
MslI	CAYNNNNRTG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	204, 252
MvaI	CCWGG	2 cut(s)	204, 252
MwoI	GCNNNNNNNGC	1 cut(s)	208
NcoI	CCATGG	1 cut(s)	710
NdeII	GATC	5 cut(s)	6, 314, 832, 875, 1065
NlaIII	CATG	6 cut(s)	13, 244, 686, 714, 934, 952
NlaIV	GGNNCC	3 cut(s)	89, 936, 1044
NmuCI	GTSAC	1 cut(s)	965
NsiI	ATGCAT	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	152
PagI	TCATGA	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	202
PfeI	GAWTC	6 cut(s)	35, 71, 149, 628, 723, 884
PkrI	GCNGC	2 cut(s)	336, 464
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	651
Psp6I	CCWGG	2 cut(s)	202, 250
PspGI	CCWGG	2 cut(s)	202, 250
PspN4I	GGNNCC	3 cut(s)	89, 936, 1044
PspPI	GGNCC	1 cut(s)	87
PsrI	GAACNNNNNNTAC	2 cut(s)	682, 714
PstI	CTGCAG	1 cut(s)	336
RsaI	GTAC	4 cut(s)	247, 473, 705, 983
RsaNI	GTAC	4 cut(s)	246, 472, 704, 982
RseI	CAYNNNNRTG	1 cut(s)	608
SacI	GAGCTC	1 cut(s)	651
SaqAI	TTAA	3 cut(s)	53, 363, 579
SatI	GCNGC	2 cut(s)	335, 463
Sau3AI	GATC	5 cut(s)	6, 314, 832, 875, 1065
Sau96I	GGNCC	1 cut(s)	87
ScaI	AGTACT	1 cut(s)	247
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	204, 252
SduI	GDGCHC	2 cut(s)	651, 779
SfaNI	GCATC	1 cut(s)	194
SfcI	CTRYAG	2 cut(s)	282, 332
SfiI	GGCCNNNNNGGCC	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	826
SmoI	CTYRAG	1 cut(s)	826
Sse9I	AATT	6 cut(s)	25, 347, 425, 563, 576, 757
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	2 cut(s)	22, 506
SspMI	CTAG	4 cut(s)	309, 638, 657, 888
SstI	GAGCTC	1 cut(s)	651
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	2 cut(s)	202, 250
StyI	CCWWGG	2 cut(s)	656, 710
TaaI	ACNGT	2 cut(s)	106, 846
TaiI	ACGT	2 cut(s)	732, 804
TaqI	TCGA	4 cut(s)	152, 288, 313, 1068
TasI	AATT	6 cut(s)	25, 347, 425, 563, 576, 757
TatI	WGTACW	3 cut(s)	245, 471, 703
TfiI	GAWTC	6 cut(s)	35, 71, 149, 628, 723, 884
Tru1I	TTAA	3 cut(s)	53, 363, 579
Tru9I	TTAA	3 cut(s)	53, 363, 579
TscAI	CASTG	3 cut(s)	472, 885, 970
TseFI	GTSAC	1 cut(s)	965
TseI	GCWGC	2 cut(s)	334, 462
Tsp45I	GTSAC	1 cut(s)	965
TspDTI	ATGAA	5 cut(s)	18, 192, 360, 782, 937
TspGWI	ACGGA	1 cut(s)	490
TspRI	CASTG	3 cut(s)	472, 885, 970
XapI	RAATTY	2 cut(s)	25, 563
XmaJI	CCTAGG	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	525
XspI	CTAG	4 cut(s)	309, 638, 657, 888
ZrmI	AGTACT	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.