Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001023

Physical Location & Seq

Genomic Coordinates Forward (+)

61240571 .. 61243275

Gene Structure 2705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG433500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAGGACCAAGAAGCGGAATTCATCGGAATCTGATAGAGGTTGGTTAAGTTGCGATATGTCAGAATCAACTTTTGGCTGGCCCCTTCAGAAAGTAACTGTTCCTATGGAGACTCAGGGAGCTTGTGAAAAATCAGATGATGATTCGAAGAGTTGGGAGGTTGAAGAAGATGAATATGCATCACCTTTATCAAGGCCTGGTTGGCCTCTCCTTCGTGTAGCAACCTCCGAAACCATGAGTACTCCTGGTAGAAAGTTTGAAGCAAAAGATGTGTCTGTAGTGGAGTGGGTGATGGGACTTCCTAGTCGAACAACCTCAGTCAATCTGCAGCTTGCTAATGAATTGAAGTTCCTCATTAAGAAAGACTCACAAGGTTGCAGGATGTTTGGCTACGCCGAAATAAGGACTGCAACTTCTCAATTCTCCTCAGATAATCTTATCGGCGAGGGAGGGTGCAGCAGTGTGTACAGAGGAGTTCTCCGATGTGGGAAATCCGTGGCGGTGAAGATTTTGAAAGTATACAAGGAAGCTTGGGATGATTTTTGCTTGGAAGCCAAATTTGTGTCTTCAATTAAGCATAAGCATATAGTATCTCTCATTGGCGTGTGTGTGGAAGATGAGAATCTTGTTCTAGTATATGAGCTCTTTCCTAGGGGGAGTTTGGAGGAGAACTTGCATGATTGTAATGATGGTTCTGTACTGCCATGGGAAGTGAGATTCAACGTGGCAGTTGCAGTTGCTGAGGCTCTAAATTATCTACACAATGAGTGCCCTCAGCCGATTATTCATAGAGACGTAAAATCTGCAAACATTCTTCTCTCAAGTGATCATCAGCCACAGTTATCAGATTTTGGGCTTGCTATATGGGGATCAGTGGATTCTAGTTATGTAATAAGTAATGATGTGGTGGGAACTTTCGGATATATGGCTCCAGAGTATTTCATGCAAGGGAGGGTCAGTGACAAGGTTGATGTGTACGCCTTTGGTGTAGTTCTCCTTGAACTACTATCAGGAAGAAAGCCAGTTGATGTTGAGGCTCCAAAAGGACAAGAGTGCTTGATCAAGTGGGTAAGAACTCTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0032870 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

361

Amino Acids

40.33

Weight (kDa)

5.19

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	143 - 344	1.9e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	144 - 342	3e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16750 AT2G16750 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030 AT4G35030
fragaria_vesca	FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g01230 FvH4_2g38170 FvH4_2g38170
malus_domestica	MD05G1121300.v1.1 MD08G1010200.v1.1 MD15G1010100.v1.1
prunus_persica	Prupe.1G362600_v2.0.a1 Prupe.8G165200_v2.0.a1 Prupe.8G165200_v2.0.a1
pyrus_communis	pycom05g11550 pycom10g10680 pycom15g00830
rosa_chinensis	RchiOBHm_Chr6g0251891 RchiOBHm_Chr6g0303311
rosa_laevigata	RLG00000011093 RLG00000015422
rosa_multiflora	Rmu_sc0007252.1_g000005 Rmu_sc0027227.1_g000001 Rmu_ssc0000303.1_g000011
rosa_roxburghii	Rroxscaffold_7G00164880 Rroxscaffold_7G00216330
rosa_rugosa	Rorug05G0504900 Rorug05G0504900 Rorug06G0320200 Rorug06G0320300 Rorug06G0320300 Rorug06G0320300 Rorug06G0320300
rosa_samantha	Rh6AG016000 Rh6AG434700 Rh6BG014000 Rh6BG468400 Rh6CG010900 Rh6CG446700 Rh6DG012100 Rh6DG433500
rosa_wichuraiana	Rw6G001530 Rw6G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	2 cut(s)	16, 500
AclWI	GGATC	1 cut(s)	877
AcsI	RAATTY	2 cut(s)	19, 557
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	4 cut(s)	241, 467, 699, 977
AfiI	CCNNNNNNNGG	2 cut(s)	15, 402
AgsI	TTSAA	7 cut(s)	164, 260, 346, 514, 570, 721, 1001
AjnI	CCWGG	2 cut(s)	196, 244
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	4 cut(s)	122, 331, 530, 643
AluI	AGCT	4 cut(s)	122, 331, 530, 643
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	2 cut(s)	104, 786
AlwI	GGATC	1 cut(s)	877
AlwNI	CAGNNNCTG	1 cut(s)	740
AoxI	GGCC	3 cut(s)	80, 194, 203
ApeKI	GCWGC	2 cut(s)	328, 456
ApoI	RAATTY	2 cut(s)	19, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspA2I	CCTAGG	1 cut(s)	650
AspS9I	GGNCC	2 cut(s)	6, 81
AsuHPI	GGTGA	3 cut(s)	174, 301, 514
AsuII	TTCGAA	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	6
AvrII	CCTAGG	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	773
BanII	GRGCYC	1 cut(s)	645
BbsI	GAAGAC	1 cut(s)	558
Bbv12I	GWGCWC	1 cut(s)	645
BbvCI	CCTCAGC	2 cut(s)	741, 774
BbvI	GCAGC	2 cut(s)	340, 468
BccI	CCATC	2 cut(s)	286, 683
BciT130I	CCWGG	2 cut(s)	198, 246
BclI	TGATCA	2 cut(s)	826, 1059
BcoDI	GTCTC	2 cut(s)	104, 786
BfaI	CTAG	4 cut(s)	303, 632, 651, 882
BfmI	CTRYAG	2 cut(s)	276, 326
BglI	GCCNNNNNGGC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	329, 457
BlnI	CCTAGG	1 cut(s)	650
BlsI	GCNGC	2 cut(s)	330, 458
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	198, 246
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	6, 81
BmiI	GGNNCC	3 cut(s)	83, 930, 1038
BmrFI	CCNGG	2 cut(s)	198, 246
BmsI	GCATC	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	558
BplI	GAGNNNNNCTC	2 cut(s)	462, 494
BpmI	CTGGAG	1 cut(s)	915
Bpu10I	CCTNAGC	2 cut(s)	741, 774
Bpu14I	TTCGAA	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	805
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	3 cut(s)	495, 650, 704
BsaXI	ACNNNNNCTCC	2 cut(s)	943, 973
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 402
Bse1I	ACTGG	1 cut(s)	1022
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	198, 246
BseDI	CCNNGG	3 cut(s)	495, 650, 704
BseGI	GGATG	2 cut(s)	387, 541
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	15, 402
BseMII	CTCAG	5 cut(s)	128, 330, 441, 732, 788
BseNI	ACTGG	1 cut(s)	1022
BseRI	GAGGAG	3 cut(s)	415, 486, 680
BseSI	GKGCMC	1 cut(s)	773
BseXI	GCAGC	2 cut(s)	340, 468
BsgI	GTGCAG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	82, 196, 205
BsiHKAI	GWGCWC	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	15, 402
BsmAI	GTCTC	2 cut(s)	104, 786
BsmBI	CGTCTC	1 cut(s)	786
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	82, 196, 205
Bsp119I	TTCGAA	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	645, 773
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	3 cut(s)	826, 869, 1059
Bsp19I	CCATGG	1 cut(s)	704
BspACI	CCGC	2 cut(s)	16, 500
BspANI	GGCC	3 cut(s)	82, 196, 205
BspCNI	CTCAG	5 cut(s)	127, 329, 440, 733, 787
BspLI	GGNNCC	3 cut(s)	83, 930, 1038
BspMAI	CTGCAG	1 cut(s)	330
BspPI	GGATC	1 cut(s)	877
BspT104I	TTCGAA	1 cut(s)	146
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	1022
BssECI	CCNNGG	3 cut(s)	495, 650, 704
BssMI	GATC	3 cut(s)	826, 869, 1059
BssNAI	GTATAC	1 cut(s)	520
BssT1I	CCWWGG	2 cut(s)	650, 704
Bst1107I	GTATAC	1 cut(s)	520
Bst2UI	CCWGG	2 cut(s)	198, 246
Bst4CI	ACNGT	2 cut(s)	100, 840
Bst6I	CTCTTC	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	465
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	80, 333, 858
BstDEI	CTNAG	5 cut(s)	114, 316, 427, 741, 774
BstDSI	CCRYGG	2 cut(s)	495, 704
BstF5I	GGATG	2 cut(s)	387, 541
BstKTI	GATC	3 cut(s)	829, 872, 1062
BstMAI	GTCTC	2 cut(s)	104, 786
BstMBI	GATC	3 cut(s)	826, 869, 1059
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNI	CCWGG	2 cut(s)	198, 246
BstSCI	CCNGG	2 cut(s)	196, 244
BstSFI	CTRYAG	2 cut(s)	276, 326
BstSLI	GKGCMC	1 cut(s)	773
BstV1I	GCAGC	2 cut(s)	340, 468
BstV2I	GAAGAC	1 cut(s)	558
BstZ17I	GTATAC	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	82, 196, 205
BtgI	CCRYGG	2 cut(s)	495, 704
BtsCI	GGATG	2 cut(s)	387, 541
BtsI	GCAGTG	1 cut(s)	466
BtsIMutI	CAGTG	3 cut(s)	466, 879, 964
Cac8I	GCNNGC	3 cut(s)	80, 333, 858
CaiI	CAGNNNCTG	1 cut(s)	740
Cfr13I	GGNCC	2 cut(s)	6, 81
Csp6I	GTAC	4 cut(s)	240, 466, 698, 976
CviAII	CATG	4 cut(s)	235, 677, 705, 943
CviQI	GTAC	4 cut(s)	240, 466, 698, 976
DdeI	CTNAG	5 cut(s)	114, 316, 427, 741, 774
DpnI	GATC	3 cut(s)	828, 871, 1061
DpnII	GATC	3 cut(s)	826, 869, 1059
DrdI	GACNNNNNNGTC	1 cut(s)	303
DseDI	GACNNNNNNGTC	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	2 cut(s)	650, 704
Eco147I	AGGCCT	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	196, 244
EcoT14I	CCWWGG	2 cut(s)	650, 704
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	2 cut(s)	650, 704
Esp3I	CGTCTC	1 cut(s)	786
FaeI	CATG	4 cut(s)	238, 680, 708, 946
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	4 cut(s)	234, 676, 704, 942
FbaI	TGATCA	2 cut(s)	826, 1059
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	2 cut(s)	329, 457
FokI	GGATG	2 cut(s)	394, 548
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	2 cut(s)	329, 457
FspBI	CTAG	4 cut(s)	303, 632, 651, 882
GluI	GCNGC	2 cut(s)	329, 457
GsuI	CTGGAG	1 cut(s)	915
HaeIII	GGCC	3 cut(s)	82, 196, 205
Hin1II	CATG	4 cut(s)	238, 680, 708, 946
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	8 cut(s)	29, 65, 112, 143, 365, 622, 717, 878
HphI	GGTGA	3 cut(s)	174, 301, 514
Hpy166II	GTNNAC	3 cut(s)	466, 520, 976
Hpy188III	TCNNGA	2 cut(s)	932, 1011
Hpy8I	GTNNAC	3 cut(s)	466, 520, 976
HpyAV	CCTTC	2 cut(s)	95, 221
HpyCH4III	ACNGT	2 cut(s)	100, 840
HpyCH4IV	ACGT	2 cut(s)	723, 795
HpyCH4V	TGCA	9 cut(s)	179, 328, 378, 410, 456, 676, 734, 806, 946
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	5 cut(s)	114, 316, 427, 741, 774
HpySE526I	ACGT	2 cut(s)	723, 795
Hsp92II	CATG	4 cut(s)	238, 680, 708, 946
Ksp22I	TGATCA	2 cut(s)	826, 1059
Kzo9I	GATC	3 cut(s)	826, 869, 1059
LmnI	GCTCC	3 cut(s)	119, 934, 1042
Lsp1109I	GCAGC	2 cut(s)	340, 468
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	4 cut(s)	303, 632, 651, 882
MaeII	ACGT	2 cut(s)	723, 795
MaeIII	GTNAC	2 cut(s)	94, 959
MalI	GATC	3 cut(s)	828, 871, 1061
MboI	GATC	3 cut(s)	826, 869, 1059
MboII	GAAGA	8 cut(s)	160, 176, 179, 517, 558, 626, 806, 1026
MhlI	GDGCHC	2 cut(s)	645, 773
MluCI	AATT	6 cut(s)	19, 341, 419, 557, 570, 751
MlyI	GAGTC	2 cut(s)	106, 359
Mph1103I	ATGCAT	1 cut(s)	181
MseI	TTAA	3 cut(s)	47, 357, 573
MslI	CAYNNNNRTG	1 cut(s)	602
MspR9I	CCNGG	2 cut(s)	198, 246
MvaI	CCWGG	2 cut(s)	198, 246
MwoI	GCNNNNNNNGC	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	704
NdeII	GATC	3 cut(s)	826, 869, 1059
NlaIII	CATG	4 cut(s)	238, 680, 708, 946
NlaIV	GGNNCC	3 cut(s)	83, 930, 1038
NmuCI	GTSAC	1 cut(s)	959
NsiI	ATGCAT	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	196
PfeI	GAWTC	6 cut(s)	29, 65, 143, 622, 717, 878
PkrI	GCNGC	2 cut(s)	330, 458
PleI	GAGTC	2 cut(s)	106, 359
PpsI	GAGTC	2 cut(s)	106, 359
Psp124BI	GAGCTC	1 cut(s)	645
Psp6I	CCWGG	2 cut(s)	196, 244
PspGI	CCWGG	2 cut(s)	196, 244
PspN4I	GGNNCC	3 cut(s)	83, 930, 1038
PspPI	GGNCC	2 cut(s)	6, 81
PsrI	GAACNNNNNNTAC	2 cut(s)	676, 708
PstI	CTGCAG	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	740
RsaI	GTAC	4 cut(s)	241, 467, 699, 977
RsaNI	GTAC	4 cut(s)	240, 466, 698, 976
RseI	CAYNNNNRTG	1 cut(s)	602
SacI	GAGCTC	1 cut(s)	645
SaqAI	TTAA	3 cut(s)	47, 357, 573
SatI	GCNGC	2 cut(s)	329, 457
Sau3AI	GATC	3 cut(s)	826, 869, 1059
Sau96I	GGNCC	2 cut(s)	6, 81
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	2 cut(s)	106, 359
ScrFI	CCNGG	2 cut(s)	198, 246
SduI	GDGCHC	2 cut(s)	645, 773
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	2 cut(s)	276, 326
SfiI	GGCCNNNNNGGCC	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	146
SinI	GGWCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	820
SmoI	CTYRAG	1 cut(s)	820
Sse9I	AATT	6 cut(s)	19, 341, 419, 557, 570, 751
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	2 cut(s)	16, 500
SspMI	CTAG	4 cut(s)	303, 632, 651, 882
SstI	GAGCTC	1 cut(s)	645
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	196, 244
StyI	CCWWGG	2 cut(s)	650, 704
TaaI	ACNGT	2 cut(s)	100, 840
TaiI	ACGT	2 cut(s)	726, 798
TaqI	TCGA	2 cut(s)	146, 307
TasI	AATT	6 cut(s)	19, 341, 419, 557, 570, 751
TatI	WGTACW	3 cut(s)	239, 465, 697
TfiI	GAWTC	6 cut(s)	29, 65, 143, 622, 717, 878
Tru1I	TTAA	3 cut(s)	47, 357, 573
Tru9I	TTAA	3 cut(s)	47, 357, 573
TscAI	CASTG	3 cut(s)	466, 879, 964
TseFI	GTSAC	1 cut(s)	959
TseI	GCWGC	2 cut(s)	328, 456
Tsp45I	GTSAC	1 cut(s)	959
TspDTI	ATGAA	5 cut(s)	12, 186, 354, 776, 931
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	3 cut(s)	466, 879, 964
VpaK11BI	GGWCC	1 cut(s)	6
XapI	RAATTY	2 cut(s)	19, 557
XmaJI	CCTAGG	1 cut(s)	650
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	4 cut(s)	303, 632, 651, 882
ZrmI	AGTACT	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.