FvH4_2g38170

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
27638994 .. 27642048
3055 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38170.t2

Sequence Viewer

Length: 1470 bp
ATGAGGACCAGGAAGAGGAATTCATCAATGGAATCTGATAGAGAGTGGTTAAGTTGCGATATGTCAGAATCAATATTTGGTTGGCCCCTTCAGAAAGTAACTGTTCCTATTGAGACTCGGGAAGCTTGTGAAAAGTCAGTTAATGATTCGAAGAGTTGGGAGGTTGAAGATGAATATGCATCACCTTTGTCAAGGATCGGTTGGTCTCTCCGTGTTGCAAATTCTGAAACCATGAGTACTCCTGCTAGAAGTTTCGAATCTAAAGAGATGTCTGTAGTCGAGTGGGTGATGGGACTTCCTAATCGAACAACGTTTGTAAATCTGCAGCTTGCTAAAGAATTGAAGTTCCTCGTTAAGAATGACTCACAAGGTTGCAGGATGTTTAGCTTCGCCGAAATTAGAACTGCAACATCTCAGTTCTCCTCAGAGAATCTTATTGGCGAGGGAGGGTGCAGCAGTGTATACAGAGGAGTTCTTCGATGTGGGAAATCTGTGGCAGTCAAGATTCTGAAAGCATACAAGGAAGCTTGGGATGATTTTTGCTTGGAAACCAAATTTGTGTCTTCAATCAAGCATAAGCATATTGCATCTCTCATTGGTGTGTGTGTGGAAGATGAGAATCTTGTTTTAGTATATGAGCTCCTTCCTAGGGGGAGTTTGGAGGAGAACTTGCATGATTGTCATGATGGTTCTGTACTGCCATGGGCAGTGAGATTCAAGGTGGCAGCTGTAGTTGCGGAGGCTCTAAATTATCTACACAATGAGTGCCCCCATCCGATTATTCATAGAGACGTAAAATCTGCAAATATTCTTCTTTCAAGTGATCTTCAGCCACAGTTATCAGATTTTGGGCTTGCCATATGGGGATCAGTGGATTCTAGTTATGTAATAAGTAATGATGTGGTGGGAACTTTCGGATACATGGCTCCAGAGTATTTTATGCAAGGGAGGGTCAGTGACAAGGTTGATGTTTATGCCTTTGGTGTGGTTCTCCTTGAACTTTTGTCAGGAAGAAAGCCAGTCGATGTCGAGGCTCCAAAAGGACAAGAGAGCTTGATCAAGTGGGCAAGAAAGCTACTAAAGATTGGAGATCTTACAGCATTGCTGGATCCCAAGCTAAAAGGGGACTATGATATTGTCCAAATGCGTCGCATGTCGTCGGCAGCAAACCTTTGTACAAACCAGTCAGCTCACATTCGTCCAAATATGAGGCAGGTACTGAATCTCTTAAGAGGGGAGACAGATGCCAATGAGTCAGACTATCATGAAGCCGACGATGATAGTTTACTGGAAGCTGATTCGAATTCAGTGTCCGAAATGTCCGAGACAAAGGATGATAGCATTTCATCATCAAATTCAAAGGATGGTAGCATTTCATCATCAAGTTCTACCGATACAGCATCCAGTGCAGGAATAACTCCACGCTTTAAGTTGAGGGACTACTTATCTATACATGACCATCATTTTTGA

Protein Analysis

490

Amino Acids

54.54

Weight (kDa)

5.31

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 141 - 406 2.2e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 143 - 356 6.3e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1204
AccI GTMKAC 1 cut(s) 462
AciI CCGC 1 cut(s) 737
AclI AACGTT 1 cut(s) 311
AclWI GGATC 4 cut(s) 203, 874, 1103, 1116
AcsI RAATTY 5 cut(s) 19, 220, 554, 1303, 1354
AcuI CTGAAG 2 cut(s) 74, 812
AfaI GTAC 4 cut(s) 238, 696, 1177, 1218
AfiI CCNNNNNNNGG 2 cut(s) 15, 649
AflII CTTAAG 1 cut(s) 1228
AgsI TTSAA 7 cut(s) 167, 343, 567, 718, 819, 998, 1359
AjnI CCWGG 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 5 cut(s) 107, 210, 783, 1232, 1319
AlwI GGATC 4 cut(s) 203, 874, 1103, 1116
AlwNI CAGNNNCTG 1 cut(s) 1219
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 4 cut(s) 325, 453, 725, 1163
ApoI RAATTY 5 cut(s) 19, 220, 554, 1303, 1354
ArsI GACNNNNNNTTYG 2 cut(s) 1295, 1327
AspA2I CCTAGG 1 cut(s) 647
AspS9I GGNCC 2 cut(s) 6, 84
AsuHPI GGTGA 2 cut(s) 174, 298
AsuII TTCGAA 3 cut(s) 149, 255, 1301
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 1 cut(s) 6
AvrII CCTAGG 1 cut(s) 647
BaeGI GKGCMC 1 cut(s) 770
BamHI GGATCC 1 cut(s) 1108
BanII GRGCYC 1 cut(s) 642
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 4 cut(s) 337, 465, 737, 1175
BccI CCATC 5 cut(s) 283, 680, 780, 1358, 1467
BciT130I CCWGG 1 cut(s) 10
BciVI GTATCC 1 cut(s) 911
BclI TGATCA 1 cut(s) 1056
BcoDI GTCTC 5 cut(s) 107, 210, 783, 1232, 1319
BfaI CTAG 3 cut(s) 246, 648, 879
BfmI CTRYAG 3 cut(s) 273, 323, 729
BfrI CTTAAG 1 cut(s) 1228
BfuAI ACCTGC 1 cut(s) 1204
BfuI GTATCC 1 cut(s) 911
BglII AGATCT 1 cut(s) 1090
BisI GCNGC 4 cut(s) 326, 454, 726, 1164
BlnI CCTAGG 1 cut(s) 647
BlsI GCNGC 4 cut(s) 327, 455, 727, 1165
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 6, 84
BmiI GGNNCC 4 cut(s) 86, 927, 1035, 1110
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 4 cut(s) 188, 596, 1234, 1409
BpiI GAAGAC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 912
Bpu14I TTCGAA 3 cut(s) 149, 255, 1301
BsaBI GATNNNNATC 1 cut(s) 618
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 647, 701
BsaXI ACNNNNNCTCC 2 cut(s) 940, 970
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 649
Bse1I ACTGG 4 cut(s) 1019, 1183, 1293, 1404
Bse3DI GCAATG 1 cut(s) 1100
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 2 cut(s) 647, 701
BseGI GGATG 6 cut(s) 384, 538, 772, 1339, 1369, 1400
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 2 cut(s) 15, 649
BseMI GCAATG 1 cut(s) 1100
BseMII CTCAG 2 cut(s) 428, 438
BseNI ACTGG 4 cut(s) 1019, 1183, 1293, 1404
BseRI GAGGAG 3 cut(s) 412, 483, 677
BseSI GKGCMC 1 cut(s) 770
BseXI GCAGC 4 cut(s) 337, 465, 737, 1175
BsgI GTGCAG 2 cut(s) 472, 1428
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 642
BsiHKCI CYCGRG 1 cut(s) 117
BslFI GGGAC 3 cut(s) 306, 1139, 1451
BslI CCNNNNNNNGG 2 cut(s) 15, 649
BsmAI GTCTC 5 cut(s) 107, 210, 783, 1232, 1319
BsmBI CGTCTC 1 cut(s) 783
BsmFI GGGAC 3 cut(s) 306, 1139, 1451
BsnI GGCC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 117
Bsp119I TTCGAA 3 cut(s) 149, 255, 1301
Bsp1286I GDGCHC 2 cut(s) 642, 770
Bsp1407I TGTACA 1 cut(s) 1175
Bsp143I GATC 6 cut(s) 195, 823, 866, 1056, 1090, 1108
Bsp19I CCATGG 1 cut(s) 701
BspACI CCGC 1 cut(s) 737
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 2 cut(s) 427, 437
BspHI TCATGA 2 cut(s) 682, 1264
BspLI GGNNCC 4 cut(s) 86, 927, 1035, 1110
BspMAI CTGCAG 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 1204
BspPI GGATC 4 cut(s) 203, 874, 1103, 1116
BspT104I TTCGAA 3 cut(s) 149, 255, 1301
BspTI CTTAAG 1 cut(s) 1228
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 1100
BsrGI TGTACA 1 cut(s) 1175
BsrI ACTGG 4 cut(s) 1019, 1183, 1293, 1404
BssECI CCNNGG 2 cut(s) 647, 701
BssMI GATC 6 cut(s) 195, 823, 866, 1056, 1090, 1108
BssNAI GTATAC 1 cut(s) 463
BssT1I CCWWGG 2 cut(s) 647, 701
Bst1107I GTATAC 1 cut(s) 463
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 103, 837
Bst6I CTCTTC 2 cut(s) 8, 146
BstAFI CTTAAG 1 cut(s) 1228
BstAPI GCANNNNNTGC 1 cut(s) 1406
BstAUI TGTACA 1 cut(s) 1175
BstBI TTCGAA 3 cut(s) 149, 255, 1301
BstC8I GCNNGC 2 cut(s) 330, 855
BstDEI CTNAG 2 cut(s) 414, 424
BstDSI CCRYGG 1 cut(s) 701
BstF5I GGATG 6 cut(s) 384, 538, 772, 1339, 1369, 1400
BstKTI GATC 6 cut(s) 198, 826, 869, 1059, 1093, 1111
BstMAI GTCTC 5 cut(s) 107, 210, 783, 1232, 1319
BstMBI GATC 6 cut(s) 195, 823, 866, 1056, 1090, 1108
BstMWI GCNNNNNNNGC 2 cut(s) 734, 1406
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 1156
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 3 cut(s) 273, 323, 729
BstSLI GKGCMC 1 cut(s) 770
BstV1I GCAGC 4 cut(s) 337, 465, 737, 1175
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 2 cut(s) 1090, 1108
BstYI RGATCY 2 cut(s) 1090, 1108
BstZ17I GTATAC 1 cut(s) 463
BsuI GTATCC 1 cut(s) 911
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 701
BtsCI GGATG 6 cut(s) 384, 538, 772, 1339, 1369, 1400
BtsI GCAGTG 2 cut(s) 463, 714
BtsIMutI CAGTG 6 cut(s) 463, 714, 876, 961, 1314, 1411
BveI ACCTGC 1 cut(s) 1204
Cac8I GCNNGC 2 cut(s) 330, 855
CaiI CAGNNNCTG 1 cut(s) 1219
CciI TCATGA 2 cut(s) 682, 1264
Cfr13I GGNCC 2 cut(s) 6, 84
CseI GACGC 1 cut(s) 1136
Csp6I GTAC 4 cut(s) 237, 695, 1176, 1217
CviAII CATG 8 cut(s) 232, 674, 683, 702, 922, 1153, 1265, 1454
CviQI GTAC 4 cut(s) 237, 695, 1176, 1217
DdeI CTNAG 2 cut(s) 414, 424
DpnI GATC 6 cut(s) 197, 825, 868, 1058, 1092, 1110
DpnII GATC 6 cut(s) 195, 823, 866, 1056, 1090, 1108
Eam1104I CTCTTC 2 cut(s) 8, 146
EarI CTCTTC 2 cut(s) 8, 146
Ecl136II GAGCTC 1 cut(s) 640
Eco130I CCWWGG 2 cut(s) 647, 701
Eco24I GRGCYC 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 640
Eco57I CTGAAG 2 cut(s) 74, 812
Eco88I CYCGRG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 640
EcoRI GAATTC 2 cut(s) 19, 1303
EcoRII CCWGG 1 cut(s) 8
EcoT14I CCWWGG 2 cut(s) 647, 701
EcoT22I ATGCAT 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 642
ErhI CCWWGG 2 cut(s) 647, 701
Esp3I CGTCTC 1 cut(s) 783
FaeI CATG 8 cut(s) 235, 677, 686, 705, 925, 1156, 1268, 1457
FaqI GGGAC 3 cut(s) 306, 1139, 1451
FatI CATG 8 cut(s) 231, 673, 682, 701, 921, 1152, 1264, 1453
FauNDI CATATG 1 cut(s) 860
FbaI TGATCA 1 cut(s) 1056
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 4 cut(s) 326, 454, 726, 1164
FokI GGATG 6 cut(s) 391, 545, 759, 1346, 1376, 1387
FriOI GRGCYC 1 cut(s) 642
Fsp4HI GCNGC 4 cut(s) 326, 454, 726, 1164
FspBI CTAG 3 cut(s) 246, 648, 879
GluI GCNGC 4 cut(s) 326, 454, 726, 1164
GsuI CTGGAG 1 cut(s) 912
HaeIII GGCC 1 cut(s) 85
HgaI GACGC 1 cut(s) 1136
Hin1II CATG 8 cut(s) 235, 677, 686, 705, 925, 1156, 1268, 1457
HindIII AAGCTT 2 cut(s) 123, 525
HphI GGTGA 2 cut(s) 174, 298
Hpy166II GTNNAC 2 cut(s) 463, 1286
Hpy188III TCNNGA 6 cut(s) 119, 502, 683, 929, 1008, 1265
Hpy8I GTNNAC 2 cut(s) 463, 1286
Hpy99I CGWCG 3 cut(s) 1152, 1162, 1277
HpyAV CCTTC 2 cut(s) 98, 653
HpyCH4III ACNGT 2 cut(s) 103, 837
HpyCH4IV ACGT 2 cut(s) 311, 792
HpyF10VI GCNNNNNNNGC 2 cut(s) 734, 1406
HpyF3I CTNAG 2 cut(s) 414, 424
HpySE526I ACGT 2 cut(s) 311, 792
Hsp92II CATG 8 cut(s) 235, 677, 686, 705, 925, 1156, 1268, 1457
Ksp22I TGATCA 1 cut(s) 1056
Kzo9I GATC 6 cut(s) 195, 823, 866, 1056, 1090, 1108
LmnI GCTCC 3 cut(s) 645, 931, 1039
Lsp1109I GCAGC 4 cut(s) 337, 465, 737, 1175
LweI GCATC 4 cut(s) 188, 596, 1234, 1409
MaeI CTAG 3 cut(s) 246, 648, 879
MaeII ACGT 2 cut(s) 311, 792
MaeIII GTNAC 2 cut(s) 97, 956
MalI GATC 6 cut(s) 197, 825, 868, 1058, 1092, 1110
MboI GATC 6 cut(s) 195, 823, 866, 1056, 1090, 1108
MboII GAAGA 9 cut(s) 25, 163, 179, 467, 555, 623, 803, 818, 1023
MflI RGATCY 2 cut(s) 1090, 1108
MhlI GDGCHC 2 cut(s) 642, 770
MluCI AATT 8 cut(s) 19, 220, 338, 396, 554, 748, 1303, 1354
MlyI GAGTC 3 cut(s) 109, 356, 1262
Mph1103I ATGCAT 1 cut(s) 181
MseI TTAA 5 cut(s) 50, 141, 354, 1229, 1428
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 728
MspCI CTTAAG 1 cut(s) 1228
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 734, 1406
NcoI CCATGG 1 cut(s) 701
NdeI CATATG 1 cut(s) 860
NdeII GATC 6 cut(s) 195, 823, 866, 1056, 1090, 1108
NlaIII CATG 8 cut(s) 235, 677, 686, 705, 925, 1156, 1268, 1457
NlaIV GGNNCC 4 cut(s) 86, 927, 1035, 1110
NmuCI GTSAC 1 cut(s) 956
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 1156
NspV TTCGAA 3 cut(s) 149, 255, 1301
PagI TCATGA 2 cut(s) 682, 1264
PkrI GCNGC 4 cut(s) 327, 455, 727, 1165
PleI GAGTC 3 cut(s) 109, 356, 1261
PpsI GAGTC 3 cut(s) 109, 356, 1261
Psp124BI GAGCTC 1 cut(s) 642
Psp1406I AACGTT 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 4 cut(s) 86, 927, 1035, 1110
PspPI GGNCC 2 cut(s) 6, 84
PstI CTGCAG 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 1219
PsuI RGATCY 2 cut(s) 1090, 1108
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 4 cut(s) 238, 696, 1177, 1218
RsaNI GTAC 4 cut(s) 237, 695, 1176, 1217
RseI CAYNNNNRTG 1 cut(s) 599
SacI GAGCTC 1 cut(s) 642
SaqAI TTAA 5 cut(s) 50, 141, 354, 1229, 1428
SatI GCNGC 4 cut(s) 326, 454, 726, 1164
Sau3AI GATC 6 cut(s) 195, 823, 866, 1056, 1090, 1108
Sau96I GGNCC 2 cut(s) 6, 84
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 3 cut(s) 109, 356, 1262
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 2 cut(s) 642, 770
SfaNI GCATC 4 cut(s) 188, 596, 1234, 1409
SfcI CTRYAG 3 cut(s) 273, 323, 729
SfuI TTCGAA 3 cut(s) 149, 255, 1301
SinI GGWCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 1228
SmoI CTYRAG 1 cut(s) 1228
Sse9I AATT 8 cut(s) 19, 220, 338, 396, 554, 748, 1303, 1354
SsiI CCGC 1 cut(s) 737
SspI AATATT 2 cut(s) 75, 808
SspMI CTAG 3 cut(s) 246, 648, 879
SstI GAGCTC 1 cut(s) 642
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 2 cut(s) 647, 701
TaaI ACNGT 2 cut(s) 103, 837
TaiI ACGT 2 cut(s) 314, 795
TaqI TCGA 8 cut(s) 149, 255, 279, 304, 478, 1023, 1029, 1301
TasI AATT 8 cut(s) 19, 220, 338, 396, 554, 748, 1303, 1354
TatI WGTACW 3 cut(s) 236, 694, 1175
Tru1I TTAA 5 cut(s) 50, 141, 354, 1229, 1428
Tru9I TTAA 5 cut(s) 50, 141, 354, 1229, 1428
TscAI CASTG 6 cut(s) 463, 714, 876, 961, 1314, 1411
TseFI GTSAC 1 cut(s) 956
TseI GCWGC 4 cut(s) 325, 453, 725, 1163
Tsp45I GTSAC 1 cut(s) 956
TspDTI ATGAA 6 cut(s) 12, 186, 773, 1281, 1335, 1365
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 6 cut(s) 463, 714, 876, 961, 1314, 1411
Vha464I CTTAAG 1 cut(s) 1228
VpaK11BI GGWCC 1 cut(s) 6
XapI RAATTY 5 cut(s) 19, 220, 554, 1303, 1354
XceI RCATGY 1 cut(s) 1156
XmaJI CCTAGG 1 cut(s) 647
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 3 cut(s) 246, 648, 879
ZrmI AGTACT 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.