FvH4_2g01230

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
1160166 .. 1164458
4293 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01230.t4

Sequence Viewer

Length: 2046 bp
ATGAAATTCAAGGATTTCAAGAAGCACAAGAAAAGTGATAAGAAGAAGAACGTGGTCTTGGTTGGGATTAAAATTGATGGCCAAAGCAGAGAGCTTCTCGGATGGGCTCTGGCGGAAGCTGCTGAAGCCGGAGACTGCGTTATTGCAGTTCATGTCTGTCGAAGTTCTGATCAGTCTGTGAAGGAAAAGCCAATAGTGGATAGTTATGTAGAAGCTTATGAAGGGTTATGTAATATAAAAAAGGTACACCTCACCAGTCAGGTATTGACAGGAAGCTCAATCCGAAAGGCGCTAGTGAAAGAGGCAAAGAACCATGAAACTATGGCTGTAGTTGTAGGCACAGGCAATTCAAGCACTGAAGGGGGTAAGGATTCTACGGCAAAATACTGTGCTAAAAAATTGCCTCCAGGCACAGATGTTGTGGCAATTAACAAGGGAGAAGTTGTATACAGAAGAAGTACAAGTTATGAACAATCAGGTCTAGCAGTTGATGAGTCAAGGCCAAGTATGAGTCAGATTTATAATTCTCTTCCTAGAATAAAAAGCCAATCTGAATTTGGTGACTCTGAGGCGGAAACAGAAACTGATAAATCATTTTCTGACAAGGCTCAGAGCTCCCAAGCTAGTTCCATGTGTGGCAATGAAGACCTGAAGAAAGAAAATAAGAGAGCTCATAATAGATCAGCTTCTTCACTCAGTATAGGAGAGTCTGCAGAGAAGTGCCTCGGATGGCCTTTGCGTAGAGCAAGTTCTATGAGTACACAAATTCCGGGCACAAGGAACATTTCTGTGGTACAATGGGTGATGAGCTTACCAGATCGTTCTCCACAGCAGTCTCCTCGATTTTCAATCATTAGAGAAACTTCCTTTGAAGGAGGTATCGAGAGTACTTCTGCTTTGGATGAGCTACCGAATGAGTTGAAGAGTCTACTGGAAACAAATCGTTGCAGATGGTTCAGTCATGAGGTTCTGAAAACTGCAACCACAAATTTTTCCTCAGAAAATCTTATTGGGAAAGGAGGATGCAACCTTGTATTCAAGGGAATTCTACCAGATGGCAAGAAAGTGGCAGTAAAGCTTATGAAGTCATCCAAAGCAAAAATGAAGGATTTTACTCATGAAGTTGATATCATCTCCTCGTTGACGCACGAGTACATCATGCCTCTGCTTGGATTCTGCTCTGAAGAGAATATTCTGATATCTATTTATGATTTTTCGCCTAAAGGAAGCTTAGAGGAGAATTTACATGGCAAGAATAAAGGCAAACCTGTATTGTCATGGGAAGTGAGATTCAAAGCTGCTCTTGGGATTGCTGAAGCTCTAAATTACCTGCACAACGAATGTTCTCCGCCAGTTATTCATAGAGATGTTAAGTCTTCAAACATTCTTCTCATGCCAGAGTTAGAACCACGGTTATCTGATTTCGGCCTTGCAATATGGGGACCGACAACTACGTCTTCCCTGACTGAATGCACTGTAGAGGGAACATTTGGTTATCTTGCTCCTGAATATTTCATGTATGGAAAAATCAGTGACAAGATTGATGTCTATGCCTTTGGTGTAGTCCTGCTTGAACTATTATCAGGAAGAAAACCTATTGGCTCTGACACTGACAAACAGCAAGAGAGCTTGGTCATGTGGGCAAAGCCTAAACTGGAGAACGGAGATATACATGACATACTGGATCCAAACTTCGATGGAAAGTTGGATGAGATTCAGGTACTGAGAATGGTTTATGCAGCAAAACTGTGCATCATACGCTCAGCTAGGCTTCGCCCTAAAATGAGTCAGATAGTGAATCTCCTAAAAGGGGATCAAGATGTGGAAATGTATGTGAACCCTCCATATTTTGATGTTGAGGATACAGAAAACCGAGATGACAATGATGATGAAGTTTATCCAAATTCAAGTGCAGAGTTACATTTAAACCTTGCGCTGCTTGATGTTGACGATAATACAACATCATTCAGTAGTGTGGAGCACAGCACCCGTTCTTGGGAAGAATATTTGGAAGGGAGATGGAGCAGATCATCAAGCTTTGATTAG

Protein Analysis

682

Amino Acids

75.66

Weight (kDa)

5.77

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 333 - 546 6.1e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 335 - 604 6.9e-35 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AasI GACNNNNNNGTC 1 cut(s) 1453
Acc36I ACCTGC 1 cut(s) 1338
AccI GTMKAC 2 cut(s) 447, 928
AciI CCGC 3 cut(s) 113, 572, 1349
AclWI GGATC 3 cut(s) 1679, 1692, 1821
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 7 cut(s) 5, 554, 765, 988, 1044, 1240, 1903
AcuI CTGAAG 5 cut(s) 144, 378, 671, 1203, 1335
AfaI GTAC 7 cut(s) 246, 460, 760, 795, 889, 1154, 1722
AfiI CCNNNNNNNGG 4 cut(s) 1169, 1810, 1995, 1996
AjnI CCWGG 1 cut(s) 406
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 993, 1025
Alw21I GWGCWC 3 cut(s) 617, 673, 1983
Alw26I GTCTC 2 cut(s) 126, 840
AlwI GGATC 3 cut(s) 1679, 1692, 1821
AlwNI CAGNNNCTG 2 cut(s) 584, 1723
AoxI GGCC 4 cut(s) 79, 500, 731, 1426
ApeKI GCWGC 4 cut(s) 119, 1298, 1739, 1936
ApoI RAATTY 7 cut(s) 5, 554, 765, 988, 1044, 1240, 1903
AspLEI GCGC 2 cut(s) 292, 1936
AspS9I GGNCC 1 cut(s) 1442
AsuC2I CCSGG 1 cut(s) 771
AsuHPI GGTGA 3 cut(s) 244, 572, 814
AvaII GGWCC 1 cut(s) 1442
BaeGI GKGCMC 1 cut(s) 776
BalI TGGCCA 1 cut(s) 81
BamHI GGATCC 1 cut(s) 1684
BanII GRGCYC 3 cut(s) 109, 617, 673
BauI CACGAG 1 cut(s) 1148
BbsI GAAGAC 3 cut(s) 651, 1368, 1449
Bbv12I GWGCWC 3 cut(s) 617, 673, 1983
BbvI GCAGC 4 cut(s) 106, 1285, 1751, 1923
BccI CCATC 7 cut(s) 71, 96, 723, 945, 1049, 1691, 2013
BceAI ACGGC 1 cut(s) 393
BcgI CGANNNNNNTGC 2 cut(s) 821, 855
BciT130I CCWGG 1 cut(s) 408
BciVI GTATCC 1 cut(s) 1855
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 1 cut(s) 771
BcoDI GTCTC 2 cut(s) 126, 840
BfaI CTAG 5 cut(s) 293, 482, 534, 624, 1767
BfmI CTRYAG 3 cut(s) 327, 711, 1476
BfoI RGCGCY 1 cut(s) 293
BfuAI ACCTGC 1 cut(s) 1338
BfuI GTATCC 1 cut(s) 1855
BisI GCNGC 4 cut(s) 120, 1299, 1740, 1937
BlpI GCTNAGC 1 cut(s) 1762
BlsI GCNGC 4 cut(s) 121, 1300, 1741, 1938
BmcAI AGTACT 1 cut(s) 889
Bme1390I CCNGG 2 cut(s) 408, 771
Bme18I GGWCC 1 cut(s) 1442
BmgT120I GGNCC 1 cut(s) 1442
BmiI GGNNCC 2 cut(s) 1443, 1686
BmrFI CCNGG 2 cut(s) 408, 771
BmsI GCATC 2 cut(s) 1013, 1761
BpiI GAAGAC 3 cut(s) 651, 1368, 1449
BplI GAGNNNNNCTC 2 cut(s) 81, 113
BpmI CTGGAG 2 cut(s) 390, 1676
Bpu1102I GCTNAGC 1 cut(s) 1762
BpuMI CCSGG 1 cut(s) 771
BsaJI CCNNGG 2 cut(s) 724, 1409
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 429, 459
Bsc4I CCNNNNNNNGG 4 cut(s) 1169, 1810, 1995, 1996
Bse1I ACTGG 5 cut(s) 255, 936, 1352, 1659, 1686
Bse3DI GCAATG 1 cut(s) 646
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 724, 1409
BseGI GGATG 6 cut(s) 107, 734, 907, 1028, 1088, 1714
BseLI CCNNNNNNNGG 4 cut(s) 1169, 1810, 1995, 1996
BseMI GCAATG 1 cut(s) 646
BseMII CTCAG 6 cut(s) 558, 623, 709, 1011, 1715, 1776
BseNI ACTGG 5 cut(s) 255, 936, 1352, 1659, 1686
BseRI GAGGAG 3 cut(s) 828, 1126, 1250
BseSI GKGCMC 1 cut(s) 776
BseXI GCAGC 4 cut(s) 106, 1285, 1751, 1923
BsgI GTGCAG 2 cut(s) 1316, 1932
BshFI GGCC 4 cut(s) 81, 502, 733, 1428
BsiHKAI GWGCWC 3 cut(s) 617, 673, 1983
BsiSI CCGG 2 cut(s) 129, 770
BslFI GGGAC 1 cut(s) 1455
BslI CCNNNNNNNGG 4 cut(s) 1169, 1810, 1995, 1996
BsmAI GTCTC 2 cut(s) 126, 840
BsmFI GGGAC 1 cut(s) 1455
BsmI GAATGC 1 cut(s) 1475
BsnI GGCC 4 cut(s) 81, 502, 733, 1428
Bsp1286I GDGCHC 5 cut(s) 109, 617, 673, 776, 1983
Bsp143I GATC 6 cut(s) 169, 680, 817, 1684, 1813, 2027
Bsp1720I GCTNAGC 1 cut(s) 1762
BspACI CCGC 3 cut(s) 113, 572, 1349
BspANI GGCC 4 cut(s) 81, 502, 733, 1428
BspCNI CTCAG 6 cut(s) 559, 622, 708, 1010, 1716, 1775
BspHI TCATGA 2 cut(s) 961, 1117
BspLI GGNNCC 2 cut(s) 1443, 1686
BspMAI CTGCAG 1 cut(s) 715
BspMI ACCTGC 1 cut(s) 1338
BspPI GGATC 3 cut(s) 1679, 1692, 1821
BsrDI GCAATG 1 cut(s) 646
BsrI ACTGG 5 cut(s) 255, 936, 1352, 1659, 1686
BssECI CCNNGG 2 cut(s) 724, 1409
BssMI GATC 6 cut(s) 169, 680, 817, 1684, 1813, 2027
BssNAI GTATAC 1 cut(s) 448
BssSI CACGAG 1 cut(s) 1148
Bst1107I GTATAC 1 cut(s) 448
Bst2BI CACGAG 1 cut(s) 1148
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 4 cut(s) 389, 1413, 1477, 1749
Bst6I CTCTTC 3 cut(s) 534, 917, 1179
BstDEI CTNAG 7 cut(s) 567, 609, 695, 997, 1231, 1724, 1762
BstDSI CCRYGG 1 cut(s) 1409
BstF5I GGATG 6 cut(s) 107, 734, 907, 1028, 1088, 1714
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 2 cut(s) 292, 1936
BstKTI GATC 6 cut(s) 172, 683, 820, 1687, 1816, 2030
BstMAI GTCTC 2 cut(s) 126, 840
BstMBI GATC 6 cut(s) 169, 680, 817, 1684, 1813, 2027
BstMWI GCNNNNNNNGC 4 cut(s) 119, 125, 351, 1758
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 2 cut(s) 406, 769
BstSFI CTRYAG 3 cut(s) 327, 711, 1476
BstSLI GKGCMC 1 cut(s) 776
BstV1I GCAGC 4 cut(s) 106, 1285, 1751, 1923
BstV2I GAAGAC 3 cut(s) 651, 1368, 1449
BstX2I RGATCY 1 cut(s) 1684
BstYI RGATCY 1 cut(s) 1684
BstZ17I GTATAC 1 cut(s) 448
BsuI GTATCC 1 cut(s) 1855
BsuRI GGCC 4 cut(s) 81, 502, 733, 1428
BtgI CCRYGG 1 cut(s) 1409
BtsCI GGATG 6 cut(s) 107, 734, 907, 1028, 1088, 1714
BtsIMutI CAGTG 4 cut(s) 354, 1473, 1537, 1608
BveI ACCTGC 1 cut(s) 1338
CaiI CAGNNNCTG 2 cut(s) 584, 1723
CciI TCATGA 2 cut(s) 961, 1117
CfoI GCGC 2 cut(s) 292, 1936
Cfr13I GGNCC 1 cut(s) 1442
CseI GACGC 1 cut(s) 1153
Csp6I GTAC 7 cut(s) 245, 459, 759, 794, 888, 1153, 1721
CviQI GTAC 7 cut(s) 245, 459, 759, 794, 888, 1153, 1721
DdeI CTNAG 7 cut(s) 567, 609, 695, 997, 1231, 1724, 1762
DpnI GATC 6 cut(s) 171, 682, 819, 1686, 1815, 2029
DpnII GATC 6 cut(s) 169, 680, 817, 1684, 1813, 2027
DraI TTTAAA 1 cut(s) 1926
DrdI GACNNNNNNGTC 1 cut(s) 1453
DseDI GACNNNNNNGTC 1 cut(s) 1453
EaeI YGGCCR 1 cut(s) 79
Eam1104I CTCTTC 3 cut(s) 534, 917, 1179
EarI CTCTTC 3 cut(s) 534, 917, 1179
EciI GGCGGA 3 cut(s) 128, 587, 1338
Ecl136II GAGCTC 2 cut(s) 615, 671
Eco24I GRGCYC 3 cut(s) 109, 617, 673
Eco32I GATATC 2 cut(s) 1129, 1200
Eco47I GGWCC 1 cut(s) 1442
Eco53kI GAGCTC 2 cut(s) 615, 671
Eco57I CTGAAG 5 cut(s) 144, 378, 671, 1203, 1335
EcoICRI GAGCTC 2 cut(s) 615, 671
EcoRI GAATTC 1 cut(s) 1044
EcoRII CCWGG 1 cut(s) 406
EcoRV GATATC 2 cut(s) 1129, 1200
EcoT38I GRGCYC 3 cut(s) 109, 617, 673
FalI AAGNNNNNCTT 2 cut(s) 1287, 1319
FaqI GGGAC 1 cut(s) 1455
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 2 cut(s) 447, 928
Fnu4HI GCNGC 4 cut(s) 120, 1299, 1740, 1937
FokI GGATG 6 cut(s) 114, 741, 914, 1035, 1075, 1721
FriOI GRGCYC 3 cut(s) 109, 617, 673
Fsp4HI GCNGC 4 cut(s) 120, 1299, 1740, 1937
FspBI CTAG 5 cut(s) 293, 482, 534, 624, 1767
GlaI GCGC 2 cut(s) 291, 1935
GluI GCNGC 4 cut(s) 120, 1299, 1740, 1937
GsuI CTGGAG 2 cut(s) 390, 1676
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 4 cut(s) 81, 502, 733, 1428
HapII CCGG 2 cut(s) 129, 770
HgaI GACGC 1 cut(s) 1153
HhaI GCGC 2 cut(s) 292, 1936
Hin6I GCGC 2 cut(s) 290, 1934
HinP1I GCGC 2 cut(s) 290, 1934
HincII GTYRAC 2 cut(s) 1143, 1948
HindII GTYRAC 2 cut(s) 1143, 1948
HindIII AAGCTT 4 cut(s) 213, 1076, 1228, 2035
HpaII CCGG 2 cut(s) 129, 770
HphI GGTGA 3 cut(s) 244, 572, 814
Hpy166II GTNNAC 7 cut(s) 247, 448, 761, 929, 1143, 1837, 1948
Hpy188III TCNNGA 7 cut(s) 19, 883, 962, 1118, 1505, 1584, 1817
Hpy8I GTNNAC 7 cut(s) 247, 448, 761, 929, 1143, 1837, 1948
HpyAV CCTTC 6 cut(s) 175, 215, 353, 866, 1099, 2006
HpyCH4III ACNGT 4 cut(s) 389, 1413, 1477, 1749
HpyCH4IV ACGT 2 cut(s) 51, 1454
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 125, 351, 1758
HpyF3I CTNAG 7 cut(s) 567, 609, 695, 997, 1231, 1724, 1762
HpySE526I ACGT 2 cut(s) 51, 1454
HspAI GCGC 2 cut(s) 290, 1934
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 6 cut(s) 169, 680, 817, 1684, 1813, 2027
LmnI GCTCC 4 cut(s) 620, 1507, 1978, 2022
Lsp1109I GCAGC 4 cut(s) 106, 1285, 1751, 1923
LweI GCATC 2 cut(s) 1013, 1761
MaeI CTAG 5 cut(s) 293, 482, 534, 624, 1767
MaeII ACGT 2 cut(s) 51, 1454
MaeIII GTNAC 3 cut(s) 560, 1532, 1917
MalI GATC 6 cut(s) 171, 682, 819, 1686, 1815, 2029
MboI GATC 6 cut(s) 169, 680, 817, 1684, 1813, 2027
MflI RGATCY 1 cut(s) 1684
MhlI GDGCHC 5 cut(s) 109, 617, 673, 776, 1983
MlsI TGGCCA 1 cut(s) 81
MluNI TGGCCA 1 cut(s) 81
MlyI GAGTC 6 cut(s) 503, 520, 557, 716, 934, 1795
MmeI TCCRAC 1 cut(s) 1686
Mox20I TGGCCA 1 cut(s) 81
MscI TGGCCA 1 cut(s) 81
MseI TTAA 4 cut(s) 69, 429, 1371, 1925
MslI CAYNNNNRTG 2 cut(s) 788, 1365
Msp20I TGGCCA 1 cut(s) 81
MspI CCGG 2 cut(s) 129, 770
MspR9I CCNGG 2 cut(s) 408, 771
Mva1269I GAATGC 1 cut(s) 1475
MvaI CCWGG 1 cut(s) 408
MwoI GCNNNNNNNGC 4 cut(s) 119, 125, 351, 1758
NciI CCSGG 1 cut(s) 771
NdeII GATC 6 cut(s) 169, 680, 817, 1684, 1813, 2027
NlaIV GGNNCC 2 cut(s) 1443, 1686
NmuCI GTSAC 2 cut(s) 560, 1532
PagI TCATGA 2 cut(s) 961, 1117
PctI GAATGC 1 cut(s) 1475
PfeI GAWTC 5 cut(s) 371, 1173, 1290, 1714, 1798
PkrI GCNGC 4 cut(s) 121, 1300, 1741, 1938
PleI GAGTC 6 cut(s) 502, 519, 557, 715, 933, 1794
PpsI GAGTC 6 cut(s) 502, 519, 557, 715, 933, 1794
PsiI TTATAA 1 cut(s) 522
Psp124BI GAGCTC 2 cut(s) 617, 673
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 1443, 1686
PspPI GGNCC 1 cut(s) 1442
PsrI GAACNNNNNNTAC 2 cut(s) 733, 765
PstI CTGCAG 1 cut(s) 715
PstNI CAGNNNCTG 2 cut(s) 584, 1723
PsuI RGATCY 1 cut(s) 1684
RsaI GTAC 7 cut(s) 246, 460, 760, 795, 889, 1154, 1722
RsaNI GTAC 7 cut(s) 245, 459, 759, 794, 888, 1153, 1721
RseI CAYNNNNRTG 2 cut(s) 788, 1365
SacI GAGCTC 2 cut(s) 617, 673
SaqAI TTAA 4 cut(s) 69, 429, 1371, 1925
SatI GCNGC 4 cut(s) 120, 1299, 1740, 1937
Sau3AI GATC 6 cut(s) 169, 680, 817, 1684, 1813, 2027
Sau96I GGNCC 1 cut(s) 1442
ScaI AGTACT 1 cut(s) 889
SchI GAGTC 6 cut(s) 503, 520, 557, 716, 934, 1795
ScrFI CCNGG 2 cut(s) 408, 771
SduI GDGCHC 5 cut(s) 109, 617, 673, 776, 1983
SfaNI GCATC 2 cut(s) 1013, 1761
SfcI CTRYAG 3 cut(s) 327, 711, 1476
SinI GGWCC 1 cut(s) 1442
SmiMI CAYNNNNRTG 2 cut(s) 788, 1365
SsiI CCGC 3 cut(s) 113, 572, 1349
SspI AATATT 3 cut(s) 1192, 1511, 2006
SspMI CTAG 5 cut(s) 293, 482, 534, 624, 1767
SstI GAGCTC 2 cut(s) 617, 673
StyD4I CCNGG 2 cut(s) 406, 769
TaaI ACNGT 4 cut(s) 389, 1413, 1477, 1749
TaiI ACGT 2 cut(s) 54, 1457
TaqI TCGA 4 cut(s) 160, 841, 882, 1695
TaqII GACCGA 1 cut(s) 1459
TatI WGTACW 4 cut(s) 458, 758, 887, 1152
TfiI GAWTC 5 cut(s) 371, 1173, 1290, 1714, 1798
Tru1I TTAA 4 cut(s) 69, 429, 1371, 1925
Tru9I TTAA 4 cut(s) 69, 429, 1371, 1925
TscAI CASTG 4 cut(s) 361, 1480, 1537, 1615
TseFI GTSAC 2 cut(s) 560, 1532
TseI GCWGC 4 cut(s) 119, 1298, 1739, 1936
Tsp45I GTSAC 2 cut(s) 560, 1532
TspGWI ACGGA 1 cut(s) 1677
TspRI CASTG 4 cut(s) 361, 1480, 1537, 1615
VpaK11BI GGWCC 1 cut(s) 1442
XapI RAATTY 7 cut(s) 5, 554, 765, 988, 1044, 1240, 1903
XcmI CCANNNNNNNNNTGG 1 cut(s) 554
XmiI GTMKAC 2 cut(s) 447, 928
XspI CTAG 5 cut(s) 293, 482, 534, 624, 1767
ZrmI AGTACT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.