Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010802

Physical Location & Seq

Genomic Coordinates Reverse (-)

17147140 .. 17148496

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAGTGTGTAGAAGCATTTCTCGGTGATTTTTCCGTCGACGATCTTCTCGACCTCTCTAACGCCGACACTTCTTTAGAGTCGTCTTCGTCACAAAGAAAAGAAGACGAACAAGAACGTGAGAAATTTAAGAGCTTTTCTGACCAAAGTACCCGTCTTTCACCGCCAGAGGATCTCTTATCTTTTCCCGGCGACGCTCCGGTTGGTGATTTGGAGGACTTAGAGTGGTTATCCAACTTCGTGGAGGATTCTTTCTCAGAATCGTATATTTCGAGTGATTTCCCGGTGAATCCAGTCGCGTCGGTGGAGGTTCGGAGACAGTGCGTTCCTGTTAAACCTAGAAGCAAACGCCGCCGCACCAACGGCCGTATCTGGTCTATGGAGTCTCCATCTCCTCTGCTATCCACCGCTGTTGCCAGAAGGAAGAAGAGAGGGAGACAGAAGGTGGATGCATCGTACGGTGGCGTAGTCCAGCAGCAGCAGCTGAGGCGGTGCTGCAGCCATTGTGGAGTCCAGAAGACGCCTCAATGGAGAATGGGTCCATTAGGTGCGAAGACACTGTGTAATGCTTGTGGGGTCCGGTTTAAGTCGGGTCGACTTTTACCCGAATATAGACCCGCTTGTAGCCCAACATTCACCAACGAGATTCACTCTAACTCTCACCGGAAAGTGTTGGAGCTACGGCTCATGAAAGTGGCGGATCCGGCTCGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

238

Amino Acids

26.8

Weight (kDa)

8.63

Isoelectric Point (pI)

63.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	166 - 200	1.3e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36240
fragaria_vesca	FvH4_2g10220 FvH4_2g10220 FvH4_2g10220
malus_domestica	MD05G1055800.v1.1 MD10G1064300.v1.1
prunus_persica	Prupe.8G086100_v2.0.a1
pyrus_communis	pycom05g04720 pycom10g05020
rosa_chinensis	RchiOBHm_Chr6g0267451
rosa_laevigata	RLG00000014002
rosa_multiflora	Rmu_co8362579.1_g000001 Rmu_sc0007301.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200760
rosa_rugosa	Rorug06G0032800
rosa_samantha	Rh6AG154100 Rh6BG154400 Rh6CG149900 Rh6DG139600
rosa_wichuraiana	Rw6G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	39, 595
AccII	CGCG	1 cut(s)	299
AciI	CCGC	7 cut(s)	164, 352, 355, 408, 490, 618, 698
AclWI	GGATC	3 cut(s)	180, 695, 708
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	521
AfaI	GTAC	2 cut(s)	151, 458
AluBI	AGCT	3 cut(s)	135, 484, 679
AluI	AGCT	3 cut(s)	135, 484, 679
Alw26I	GTCTC	3 cut(s)	310, 390, 430
AlwI	GGATC	3 cut(s)	180, 695, 708
AlwNI	CAGNNNCTG	1 cut(s)	484
Ama87I	CYCGRG	1 cut(s)	708
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	5 cut(s)	475, 478, 481, 495, 498
ApoI	RAATTY	1 cut(s)	125
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
Asp700I	GAANNNNTTC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	539, 577
AsuC2I	CCSGG	2 cut(s)	189, 284
AsuHPI	GGTGA	6 cut(s)	38, 153, 218, 298, 628, 653
AvaI	CYCGRG	1 cut(s)	708
AvaII	GGWCC	2 cut(s)	539, 577
BaeI	ACNNNNGTAYC	4 cut(s)	133, 166, 352, 385
BamHI	GGATCC	1 cut(s)	700
BbsI	GAAGAC	4 cut(s)	78, 111, 524, 560
BbvCI	CCTCAGC	1 cut(s)	485
BbvI	GCAGC	5 cut(s)	482, 487, 490, 493, 510
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	3 cut(s)	351, 379, 698
BcnI	CCSGG	2 cut(s)	189, 284
BcoDI	GTCTC	3 cut(s)	310, 390, 430
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	496
BisI	GCNGC	7 cut(s)	352, 355, 476, 479, 482, 496, 499
BlsI	GCNGC	7 cut(s)	353, 356, 477, 480, 483, 497, 500
Bme1390I	CCNGG	2 cut(s)	189, 284
Bme18I	GGWCC	2 cut(s)	539, 577
BmeT110I	CYCGRG	1 cut(s)	708
BmgT120I	GGNCC	2 cut(s)	539, 577
BmiI	GGNNCC	3 cut(s)	540, 578, 702
BmrFI	CCNGG	2 cut(s)	189, 284
BmsI	GCATC	2 cut(s)	439, 461
BpiI	GAAGAC	4 cut(s)	78, 111, 524, 560
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
Bpu10I	CCTNAGC	1 cut(s)	485
BpuMI	CCSGG	2 cut(s)	189, 284
BsaHI	GRCGYC	1 cut(s)	521
BsaWI	WCCGGW	3 cut(s)	199, 579, 663
BsaXI	ACNNNNNCTCC	2 cut(s)	523, 553
Bse1I	ACTGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	270, 476
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	384
BseX3I	CGGCCG	1 cut(s)	364
BseXI	GCAGC	5 cut(s)	482, 487, 490, 493, 510
Bsh1236I	CGCG	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	708
BsiSI	CCGG	6 cut(s)	189, 200, 284, 580, 664, 704
BsiWI	CGTACG	1 cut(s)	456
BsmAI	GTCTC	3 cut(s)	310, 390, 430
BsnI	GGCC	1 cut(s)	366
BsoBI	CYCGRG	1 cut(s)	708
Bsp143I	GATC	3 cut(s)	43, 172, 700
BspACI	CCGC	7 cut(s)	164, 352, 355, 408, 490, 618, 698
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	2 cut(s)	269, 477
BspFNI	CGCG	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	3 cut(s)	540, 578, 702
BspMAI	CTGCAG	1 cut(s)	500
BspPI	GGATC	3 cut(s)	180, 695, 708
BsrI	ACTGG	1 cut(s)	293
BssMI	GATC	3 cut(s)	43, 172, 700
BssNI	GRCGYC	1 cut(s)	521
Bst4CI	ACNGT	3 cut(s)	321, 461, 561
Bst6I	CTCTTC	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	521
BstDEI	CTNAG	3 cut(s)	220, 256, 485
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	1 cut(s)	299
BstKTI	GATC	3 cut(s)	46, 175, 703
BstMAI	GTCTC	3 cut(s)	310, 390, 430
BstMBI	GATC	3 cut(s)	43, 172, 700
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	5 cut(s)	351, 363, 481, 487, 704
BstSCI	CCNGG	2 cut(s)	187, 282
BstSFI	CTRYAG	1 cut(s)	496
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	5 cut(s)	482, 487, 490, 493, 510
BstV2I	GAAGAC	4 cut(s)	78, 111, 524, 560
BstX2I	RGATCY	2 cut(s)	172, 700
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	2 cut(s)	172, 700
BstZI	CGGCCG	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	454
BtsIMutI	CAGTG	2 cut(s)	326, 557
CaiI	CAGNNNCTG	1 cut(s)	484
CciI	TCATGA	1 cut(s)	687
Cfr13I	GGNCC	2 cut(s)	539, 577
CseI	GACGC	3 cut(s)	203, 288, 529
Csp6I	GTAC	2 cut(s)	150, 457
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	1 cut(s)	688
CviJI	RGCY	8 cut(s)	135, 366, 484, 501, 627, 679, 685, 707
CviKI_1	RGCY	8 cut(s)	135, 366, 484, 501, 627, 679, 685, 707
CviQI	GTAC	2 cut(s)	150, 457
DdeI	CTNAG	3 cut(s)	220, 256, 485
DpnI	GATC	3 cut(s)	45, 174, 702
DpnII	GATC	3 cut(s)	43, 172, 700
EaeI	YGGCCR	1 cut(s)	364
EagI	CGGCCG	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
EciI	GGCGGA	1 cut(s)	713
EclXI	CGGCCG	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	539, 577
Eco52I	CGGCCG	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	708
EcoT22I	ATGCAT	1 cut(s)	454
FaeI	CATG	1 cut(s)	691
FaiI	YATR	4 cut(s)	267, 380, 612, 689
FatI	CATG	1 cut(s)	687
FauI	CCCGC	1 cut(s)	625
FblI	GTMKAC	2 cut(s)	39, 595
Fnu4HI	GCNGC	7 cut(s)	352, 355, 476, 479, 482, 496, 499
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	7 cut(s)	352, 355, 476, 479, 482, 496, 499
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	7 cut(s)	352, 355, 476, 479, 482, 496, 499
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	6 cut(s)	189, 200, 284, 580, 664, 704
HgaI	GACGC	3 cut(s)	203, 288, 529
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	1 cut(s)	691
HincII	GTYRAC	2 cut(s)	40, 596
HindII	GTYRAC	2 cut(s)	40, 596
HinfI	GANTC	7 cut(s)	80, 248, 260, 289, 383, 510, 646
HpaII	CCGG	6 cut(s)	189, 200, 284, 580, 664, 704
HphI	GGTGA	6 cut(s)	38, 153, 218, 298, 628, 653
Hpy166II	GTNNAC	2 cut(s)	40, 596
Hpy188I	TCNGA	3 cut(s)	142, 259, 315
Hpy188III	TCNNGA	3 cut(s)	50, 514, 688
Hpy8I	GTNNAC	2 cut(s)	40, 596
Hpy99I	CGWCG	4 cut(s)	41, 44, 197, 304
HpyAV	CCTTC	2 cut(s)	414, 436
HpyCH4III	ACNGT	3 cut(s)	321, 461, 561
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	452, 498
HpyF10VI	GCNNNNNNNGC	5 cut(s)	351, 363, 481, 487, 704
HpyF3I	CTNAG	3 cut(s)	220, 256, 485
HpySE526I	ACGT	1 cut(s)	118
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	43, 172, 700
LmnI	GCTCC	2 cut(s)	202, 676
Lsp1109I	GCAGC	5 cut(s)	482, 487, 490, 493, 510
LweI	GCATC	2 cut(s)	439, 461
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	3 cut(s)	45, 174, 702
MboI	GATC	3 cut(s)	43, 172, 700
MboII	GAAGA	7 cut(s)	38, 78, 116, 436, 439, 529, 565
MflI	RGATCY	2 cut(s)	172, 700
MluCI	AATT	1 cut(s)	125
MlyI	GAGTC	3 cut(s)	89, 392, 519
MmeI	TCCRAC	2 cut(s)	258, 654
MnlI	CCTC	9 cut(s)	65, 163, 208, 238, 301, 405, 425, 480, 534
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	4 cut(s)	129, 333, 585, 715
MslI	CAYNNNNRTG	1 cut(s)	692
MspA1I	CMGCKG	2 cut(s)	410, 484
MspI	CCGG	6 cut(s)	189, 200, 284, 580, 664, 704
MspR9I	CCNGG	2 cut(s)	189, 284
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	5 cut(s)	351, 363, 481, 487, 704
NciI	CCSGG	2 cut(s)	189, 284
NdeII	GATC	3 cut(s)	43, 172, 700
NlaIII	CATG	1 cut(s)	691
NlaIV	GGNNCC	3 cut(s)	540, 578, 702
NmuCI	GTSAC	1 cut(s)	90
NsiI	ATGCAT	1 cut(s)	454
PagI	TCATGA	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 269
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	4 cut(s)	248, 260, 289, 646
Pfl23II	CGTACG	1 cut(s)	456
PkrI	GCNGC	7 cut(s)	353, 356, 477, 480, 483, 497, 500
PleI	GAGTC	3 cut(s)	88, 391, 518
PpsI	GAGTC	3 cut(s)	88, 391, 518
PspLI	CGTACG	1 cut(s)	456
PspN4I	GGNNCC	3 cut(s)	540, 578, 702
PspPI	GGNCC	2 cut(s)	539, 577
PstI	CTGCAG	1 cut(s)	500
PstNI	CAGNNNCTG	1 cut(s)	484
PsuI	RGATCY	2 cut(s)	172, 700
PvuII	CAGCTG	1 cut(s)	484
RsaI	GTAC	2 cut(s)	151, 458
RsaNI	GTAC	2 cut(s)	150, 457
RseI	CAYNNNNRTG	1 cut(s)	692
SalI	GTCGAC	2 cut(s)	38, 594
SaqAI	TTAA	4 cut(s)	129, 333, 585, 715
SatI	GCNGC	7 cut(s)	352, 355, 476, 479, 482, 496, 499
Sau3AI	GATC	3 cut(s)	43, 172, 700
Sau96I	GGNCC	2 cut(s)	539, 577
SchI	GAGTC	3 cut(s)	89, 392, 519
ScrFI	CCNGG	2 cut(s)	189, 284
SetI	ASST	9 cut(s)	57, 121, 137, 312, 340, 447, 486, 550, 681
SfaNI	GCATC	2 cut(s)	439, 461
SfcI	CTRYAG	1 cut(s)	496
SgrDI	CGTCGACG	1 cut(s)	38
SinI	GGWCC	2 cut(s)	539, 577
SmiMI	CAYNNNNRTG	1 cut(s)	692
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	7 cut(s)	164, 352, 355, 408, 490, 618, 698
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	187, 282
TaaI	ACNGT	3 cut(s)	321, 461, 561
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	4 cut(s)	39, 51, 272, 595
TasI	AATT	1 cut(s)	125
TauI	GCSGC	2 cut(s)	354, 357
TfiI	GAWTC	4 cut(s)	248, 260, 289, 646
Tru1I	TTAA	4 cut(s)	129, 333, 585, 715
Tru9I	TTAA	4 cut(s)	129, 333, 585, 715
TscAI	CASTG	2 cut(s)	326, 564
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	5 cut(s)	475, 478, 481, 495, 498
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	704
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	2 cut(s)	326, 564
VpaK11BI	GGWCC	2 cut(s)	539, 577
XapI	RAATTY	1 cut(s)	125
XmiI	GTMKAC	2 cut(s)	39, 595
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	339
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.