FvH4_2g10220

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
9060425 .. 9062733
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10220.t1

Sequence Viewer

Length: 1062 bp
ATGGAGCTGTGCATGGAAGCAAGGGCCTTGAAGTCAAGTTTGCGCCGAGAACTAGCCATGAAGTCGACTCAGCATGCTTTAATGGAGGAGCTCTGGTGTGCTACTGCAATTTCTGGCGTACCCAGTGAGGATTTCTCAGTTGATGACCTTCTTGACTTCTCTAATAGCCAATTCGAAAATGGGTCTGTTGAAGAAGAACAAGAACTTGAGGAACATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACAAAGACTCTGTTTCAGTGGACTCTGTTGAAAATTCCAATTCTAGCTACTTCACCACCGAGTCAACTCTGGCCAGCCAACTCGCCGTTCCGGATGATGATATAGCAGAGCTTGAATGGGTTTCTCACTTTGTGGACGACTCTGCTTCAGAGCTTTCTCTTCTGCACCCAGTTAGCAAGCTCAAACCGGAAGCTTTAACACTGAACCGGTCTGAACCGGAGGCAAGAAGACTAGCACTAGCTCATGATCAATCAACGCTTTCATGGCTTCCCTCACAAGTCCCGGTCAAACCCAGAAGCAAACGTTTTAGACCGGCCAGTCGGCTTCGGTCATCAGTGTGGAACCCACTTGGTGACTCACCGTCTTTAACGTCTAGTCTACCGTCTCCGTCGTCGACATCGTCTTGCTCTTCAGGGATGTCATTTTCGACGCCTTGTCTTGTCCTCACCAACCCGGTTCACAAAGTGGGGGTGTTTTGGGGAGAACCGGCTGCCAAGAAGCAAAAGAGAAAACCGGCGGTTCAGACCGGTGATGAGGTTGTAGTTGGGACTCAGAGGAGGTGCAGCCATTGCCAGGTTCAGAAGACTCCTCAGTGGAGAACCGGTCCACTCGGACCCAAGACGCTGTGTAATGCGTGTGGGGTTCGATACAAGTCCGGTCGGCTGTTTCCGGAATATAGACCGGCGTGTAGTCCGACTTTTTCGGGGGATGTTCACTCGAATAGTCATCGGAAAGTTTTGGAGATGAGGAGGAGGAAAGATACCGGTGAGCCGGAATCGGGGATGAGCAAAATGATTCCGGGTTTTTGA

Protein Analysis

354

Amino Acids

39.22

Weight (kDa)

5.13

Isoelectric Point (pI)

71.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 272 - 305 1.9e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010802)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 570
AccI GTMKAC 3 cut(s) 65, 631, 647
AccIII TCCGGA 2 cut(s) 343, 922
AciI CCGC 1 cut(s) 770
AclI AACGTT 1 cut(s) 556
AcoI YGGCCR 2 cut(s) 324, 567
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 2 cut(s) 384, 648
AcyI GRCGYC 1 cut(s) 683
AdeI CACNNNGTG 3 cut(s) 385, 605, 718
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 2 cut(s) 826, 1031
AgeI ACCGGT 4 cut(s) 459, 779, 854, 1016
AgsI TTSAA 4 cut(s) 31, 191, 284, 368
AhdI GACNNNNNGTC 2 cut(s) 613, 687
AjnI CCWGG 1 cut(s) 825
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 8 cut(s) 7, 91, 300, 364, 406, 433, 446, 494
AluI AGCT 8 cut(s) 7, 91, 300, 364, 406, 433, 446, 494
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 642
Aor13HI TCCGGA 2 cut(s) 343, 922
AoxI GGCC 3 cut(s) 24, 324, 567
ApeKI GCWGC 2 cut(s) 743, 816
ApoI RAATTY 1 cut(s) 286
AsiGI ACCGGT 4 cut(s) 459, 779, 854, 1016
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 3 cut(s) 24, 857, 866
AsuC2I CCSGG 3 cut(s) 536, 707, 1053
AsuHPI GGTGA 6 cut(s) 298, 603, 617, 691, 794, 1031
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 2 cut(s) 857, 866
BalI TGGCCA 1 cut(s) 326
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 3 cut(s) 258, 487, 842
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 730, 828
BceAI ACGGC 1 cut(s) 323
BciT130I CCWGG 1 cut(s) 827
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 3 cut(s) 536, 707, 1053
BcoDI GTCTC 1 cut(s) 642
BfaI CTAG 5 cut(s) 53, 297, 485, 491, 627
BisI GCNGC 2 cut(s) 744, 817
BlsI GCNGC 2 cut(s) 745, 818
Bme1390I CCNGG 4 cut(s) 536, 707, 827, 1053
Bme18I GGWCC 2 cut(s) 857, 866
BmeRI GACNNNNNGTC 2 cut(s) 613, 687
BmgT120I GGNCC 3 cut(s) 24, 857, 866
BmiI GGNNCC 2 cut(s) 596, 868
BmrFI CCNGG 4 cut(s) 536, 707, 827, 1053
BmrI ACTGGG 2 cut(s) 117, 416
BmuI ACTGGG 2 cut(s) 117, 416
BpiI GAAGAC 3 cut(s) 258, 487, 842
BplI GAGNNNNNCTC 2 cut(s) 119, 151
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 3 cut(s) 536, 707, 1053
BsaHI GRCGYC 1 cut(s) 683
BsaWI WCCGGW 9 cut(s) 343, 439, 459, 469, 779, 854, 908, 922, 1016
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 841, 871
Bsc4I CCNNNNNNNGG 2 cut(s) 826, 1031
Bse118I RCCGGY 8 cut(s) 459, 565, 739, 766, 779, 854, 934, 1016
Bse1I ACTGG 3 cut(s) 123, 422, 570
Bse3DI GCAATG 1 cut(s) 820
BseAI TCCGGA 2 cut(s) 343, 922
BseBI CCWGG 1 cut(s) 827
BseGI GGATG 4 cut(s) 352, 675, 967, 1041
BseLI CCNNNNNNNGG 2 cut(s) 826, 1031
BseMI GCAATG 1 cut(s) 820
BseMII CTCAG 4 cut(s) 83, 150, 818, 857
BseNI ACTGG 3 cut(s) 123, 422, 570
BseRI GAGGAG 5 cut(s) 101, 823, 831, 1015, 1018
BseXI GCAGC 2 cut(s) 730, 828
BsgI GTGCAG 2 cut(s) 401, 835
Bsh1285I CGRYCG 1 cut(s) 913
BshFI GGCC 3 cut(s) 26, 326, 569
BshTI ACCGGT 4 cut(s) 459, 779, 854, 1016
BsiEI CGRYCG 1 cut(s) 913
BsiHKAI GWGCWC 1 cut(s) 93
BslFI GGGAC 2 cut(s) 518, 814
BslI CCNNNNNNNGG 2 cut(s) 826, 1031
BsmAI GTCTC 1 cut(s) 642
BsmBI CGTCTC 1 cut(s) 642
BsmFI GGGAC 2 cut(s) 518, 814
BsnI GGCC 3 cut(s) 26, 326, 569
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 93
Bsp13I TCCGGA 2 cut(s) 343, 922
Bsp143I GATC 1 cut(s) 499
BspACI CCGC 1 cut(s) 770
BspANI GGCC 3 cut(s) 26, 326, 569
BspCNI CTCAG 4 cut(s) 82, 149, 817, 856
BspEI TCCGGA 2 cut(s) 343, 922
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 596, 868
BspQI GCTCTTC 1 cut(s) 667
BspT104I TTCGAA 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 820
BsrFI RCCGGY 8 cut(s) 459, 565, 739, 766, 779, 854, 934, 1016
BsrI ACTGG 3 cut(s) 123, 422, 570
BssAI RCCGGY 8 cut(s) 459, 565, 739, 766, 779, 854, 934, 1016
BssMI GATC 1 cut(s) 499
BssNI GRCGYC 1 cut(s) 683
Bst2UI CCWGG 1 cut(s) 827
Bst4CI ACNGT 2 cut(s) 615, 636
Bst6I CTCTTC 2 cut(s) 417, 667
BstACI GRCGYC 1 cut(s) 683
BstAPI GCANNNNNTGC 1 cut(s) 822
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 75, 328, 431
BstDEI CTNAG 4 cut(s) 69, 136, 804, 843
BstF5I GGATG 4 cut(s) 352, 675, 967, 1041
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 1 cut(s) 502
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 1 cut(s) 499
BstMCI CGRYCG 1 cut(s) 913
BstMWI GCNNNNNNNGC 2 cut(s) 517, 822
BstNI CCWGG 1 cut(s) 827
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 4 cut(s) 534, 705, 825, 1051
BstV1I GCAGC 2 cut(s) 730, 828
BstV2I GAAGAC 3 cut(s) 258, 487, 842
BsuRI GGCC 3 cut(s) 26, 326, 569
BtsCI GGATG 4 cut(s) 352, 675, 967, 1041
BtsIMutI CAGTG 5 cut(s) 130, 276, 452, 594, 851
Cac8I GCNNGC 3 cut(s) 75, 328, 431
CciI TCATGA 1 cut(s) 496
CfoI GCGC 1 cut(s) 45
Cfr10I RCCGGY 8 cut(s) 459, 565, 739, 766, 779, 854, 934, 1016
Cfr13I GGNCC 3 cut(s) 24, 857, 866
CseI GACGC 2 cut(s) 691, 883
Csp6I GTAC 1 cut(s) 119
CspAI ACCGGT 4 cut(s) 459, 779, 854, 1016
CviAII CATG 6 cut(s) 13, 58, 74, 215, 497, 516
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 4 cut(s) 69, 136, 804, 843
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
DraIII CACNNNGTG 3 cut(s) 385, 605, 718
DrdI GACNNNNNNGTC 1 cut(s) 570
DriI GACNNNNNGTC 2 cut(s) 613, 687
DseDI GACNNNNNNGTC 1 cut(s) 570
EaeI YGGCCR 2 cut(s) 324, 567
Eam1104I CTCTTC 2 cut(s) 417, 667
Eam1105I GACNNNNNGTC 2 cut(s) 613, 687
EarI CTCTTC 2 cut(s) 417, 667
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 857, 866
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 2 cut(s) 384, 648
EcoICRI GAGCTC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 825
EcoT38I GRGCYC 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 642
FaeI CATG 6 cut(s) 16, 61, 77, 218, 500, 519
FaiI YATR 8 cut(s) 14, 59, 75, 216, 356, 498, 517, 930
FaqI GGGAC 2 cut(s) 518, 814
FatI CATG 6 cut(s) 12, 57, 73, 214, 496, 515
FbaI TGATCA 1 cut(s) 499
FblI GTMKAC 3 cut(s) 65, 631, 647
Fnu4HI GCNGC 2 cut(s) 744, 817
FokI GGATG 4 cut(s) 359, 682, 974, 1048
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 2 cut(s) 744, 817
FspBI CTAG 5 cut(s) 53, 297, 485, 491, 627
GlaI GCGC 1 cut(s) 44
GluI GCNGC 2 cut(s) 744, 817
HaeIII GGCC 3 cut(s) 26, 326, 569
HgaI GACGC 2 cut(s) 691, 883
HhaI GCGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 683
Hin1II CATG 6 cut(s) 16, 61, 77, 218, 500, 519
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 3 cut(s) 66, 318, 648
HindII GTYRAC 3 cut(s) 66, 318, 648
HindIII AAGCTT 1 cut(s) 444
HphI GGTGA 6 cut(s) 298, 603, 617, 691, 794, 1031
Hpy166II GTNNAC 9 cut(s) 66, 274, 318, 388, 632, 648, 712, 860, 967
Hpy188I TCNGA 8 cut(s) 403, 466, 777, 807, 834, 866, 948, 984
Hpy188III TCNNGA 4 cut(s) 152, 344, 497, 923
Hpy8I GTNNAC 9 cut(s) 66, 274, 318, 388, 632, 648, 712, 860, 967
Hpy99I CGWCG 3 cut(s) 646, 649, 685
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 615, 636
HpyCH4IV ACGT 2 cut(s) 556, 623
HpyCH4V TGCA 4 cut(s) 12, 107, 418, 816
HpyF10VI GCNNNNNNNGC 2 cut(s) 517, 822
HpyF3I CTNAG 4 cut(s) 69, 136, 804, 843
HpySE526I ACGT 2 cut(s) 556, 623
Hsp92I GRCGYC 1 cut(s) 683
Hsp92II CATG 6 cut(s) 16, 61, 77, 218, 500, 519
HspAI GCGC 1 cut(s) 43
Kpn2I TCCGGA 2 cut(s) 343, 922
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 1 cut(s) 499
LguI GCTCTTC 1 cut(s) 667
LmnI GCTCC 2 cut(s) 4, 88
Lsp1109I GCAGC 2 cut(s) 730, 828
MaeI CTAG 5 cut(s) 53, 297, 485, 491, 627
MaeII ACGT 2 cut(s) 556, 623
MaeIII GTNAC 1 cut(s) 605
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MhlI GDGCHC 1 cut(s) 93
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 4 cut(s) 108, 170, 286, 292
MluNI TGGCCA 1 cut(s) 326
MlyI GAGTC 8 cut(s) 61, 254, 269, 323, 386, 602, 796, 832
MmeI TCCRAC 1 cut(s) 971
Mox20I TGGCCA 1 cut(s) 326
MroI TCCGGA 2 cut(s) 343, 922
MscI TGGCCA 1 cut(s) 326
MseI TTAA 3 cut(s) 80, 449, 620
MslI CAYNNNNRTG 1 cut(s) 589
Msp20I TGGCCA 1 cut(s) 326
MspR9I CCNGG 4 cut(s) 536, 707, 827, 1053
MvaI CCWGG 1 cut(s) 827
MwoI GCNNNNNNNGC 2 cut(s) 517, 822
NciI CCSGG 3 cut(s) 536, 707, 1053
NdeII GATC 1 cut(s) 499
NlaIII CATG 6 cut(s) 16, 61, 77, 218, 500, 519
NlaIV GGNNCC 2 cut(s) 596, 868
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 605
NspI RCATGY 1 cut(s) 77
NspV TTCGAA 1 cut(s) 174
PaeI GCATGC 1 cut(s) 77
PagI TCATGA 1 cut(s) 496
PciSI GCTCTTC 1 cut(s) 667
PcsI WCGNNNNNNNCGW 1 cut(s) 650
PfeI GAWTC 2 cut(s) 1028, 1048
PflFI GACNNNGTC 1 cut(s) 652
PinAI ACCGGT 4 cut(s) 459, 779, 854, 1016
PkrI GCNGC 2 cut(s) 745, 818
PleI GAGTC 8 cut(s) 61, 254, 269, 322, 386, 602, 796, 832
PpsI GAGTC 8 cut(s) 61, 254, 269, 322, 386, 602, 796, 832
Psp124BI GAGCTC 1 cut(s) 93
Psp1406I AACGTT 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 825
PspGI CCWGG 1 cut(s) 825
PspN4I GGNNCC 2 cut(s) 596, 868
PspPI GGNCC 3 cut(s) 24, 857, 866
PsyI GACNNNGTC 1 cut(s) 652
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 589
SacI GAGCTC 1 cut(s) 93
SalI GTCGAC 2 cut(s) 64, 646
SapI GCTCTTC 1 cut(s) 667
SaqAI TTAA 3 cut(s) 80, 449, 620
SatI GCNGC 2 cut(s) 744, 817
Sau3AI GATC 1 cut(s) 499
Sau96I GGNCC 3 cut(s) 24, 857, 866
SchI GAGTC 8 cut(s) 61, 254, 269, 323, 386, 602, 796, 832
ScrFI CCNGG 4 cut(s) 536, 707, 827, 1053
SduI GDGCHC 1 cut(s) 93
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 2 cut(s) 857, 866
SmiMI CAYNNNNRTG 1 cut(s) 589
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SphI GCATGC 1 cut(s) 77
Sse9I AATT 4 cut(s) 108, 170, 286, 292
SsiI CCGC 1 cut(s) 770
SspMI CTAG 5 cut(s) 53, 297, 485, 491, 627
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 4 cut(s) 534, 705, 825, 1051
TaaI ACNGT 2 cut(s) 615, 636
TaiI ACGT 2 cut(s) 559, 626
TaqI TCGA 6 cut(s) 65, 174, 647, 680, 898, 971
TaqII GACCGA 1 cut(s) 570
TasI AATT 4 cut(s) 108, 170, 286, 292
TfiI GAWTC 2 cut(s) 1028, 1048
Tru1I TTAA 3 cut(s) 80, 449, 620
Tru9I TTAA 3 cut(s) 80, 449, 620
TscAI CASTG 5 cut(s) 130, 276, 459, 594, 851
TseFI GTSAC 1 cut(s) 605
TseI GCWGC 2 cut(s) 743, 816
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 3 cut(s) 74, 231, 504
TspGWI ACGGA 1 cut(s) 630
TspRI CASTG 5 cut(s) 130, 276, 459, 594, 851
Tth111I GACNNNGTC 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 857, 866
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 77
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XmiI GTMKAC 3 cut(s) 65, 631, 647
XspI CTAG 5 cut(s) 53, 297, 485, 491, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.