Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8362579.1

Orthogroup ID

OG0010802

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1087

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8362579.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ctacctttcatcttcctcgcaccttttcctcttctttcttcatcatcagcgtcatcgtctcaccaggaaatggagccgtgcatggaagcaagggccttgaagtcgagtttgcttacagaactggccttaaagtcgacccagcatggtttaatggaggagttttggagtgttactgcaatttccggcgtgcccagtgaggatttctcagtggatgaccttcttgacttctctaatggcgaattcgaagatgggtccgttgaagaagaacaagaactagaagaacaggaggaagaagaagaagaagaagacaaagactctgtttcaatggactctgttgaaaattccaattccagcaacttcaccgagtcaactctggccagccatctcgccgttccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

132

Amino Acids

14.54

Weight (kDa)

4.05

Isoelectric Point (pI)

71.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36240
fragaria_vesca	FvH4_2g10220 FvH4_2g10220 FvH4_2g10220
malus_domestica	MD05G1055800.v1.1 MD10G1064300.v1.1
prunus_persica	Prupe.8G086100_v2.0.a1
pyrus_communis	pycom05g04720 pycom10g05020
rosa_chinensis	RchiOBHm_Chr6g0267451
rosa_laevigata	RLG00000014002
rosa_multiflora	Rmu_co8362579.1_g000001 Rmu_sc0007301.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200760
rosa_rugosa	Rorug06G0032800
rosa_samantha	Rh6AG154100 Rh6BG154400 Rh6CG149900 Rh6DG139600
rosa_wichuraiana	Rw6G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	2 cut(s)	239, 340
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	4 cut(s)	100, 260, 324, 338
AjnI	CCWGG	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	3 cut(s)	93, 123, 375
ApoI	RAATTY	2 cut(s)	239, 340
AspS9I	GGNCC	2 cut(s)	93, 252
AsuHPI	GGTGA	2 cut(s)	53, 352
AsuII	TTCGAA	1 cut(s)	243
AvaII	GGWCC	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	312
BccI	CCATC	2 cut(s)	242, 390
BceAI	ACGGC	2 cut(s)	61, 374
BciT130I	CCWGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	93, 252
BmiI	GGNNCC	2 cut(s)	75, 253
BmrFI	CCNGG	1 cut(s)	65
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu14I	TTCGAA	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	126, 192
BseBI	CCWGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	126, 192
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	192
BseYI	CCCAGC	1 cut(s)	138
BshFI	GGCC	3 cut(s)	95, 125, 377
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	95, 125, 377
Bsp119I	TTCGAA	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	192
BspANI	GGCC	3 cut(s)	95, 125, 377
BspCNI	CTCAG	1 cut(s)	218
BspLI	GGNNCC	2 cut(s)	75, 253
BspT104I	TTCGAA	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	126, 192
Bst2UI	CCWGG	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	188, 379
BstDEI	CTNAG	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	63
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	312
BsuRI	GGCC	3 cut(s)	95, 125, 377
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	199, 213
Cac8I	GCNNGC	2 cut(s)	188, 379
Cfr13I	GGNCC	2 cut(s)	93, 252
CseI	GACGC	1 cut(s)	39
CviAII	CATG	2 cut(s)	82, 143
CviJI	RGCY	5 cut(s)	76, 95, 125, 377, 381
CviKI_1	RGCY	5 cut(s)	76, 95, 125, 377, 381
DdeI	CTNAG	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	85, 146
FaiI	YATR	2 cut(s)	83, 144
FatI	CATG	2 cut(s)	81, 142
FblI	GTMKAC	1 cut(s)	134
FokI	GGATG	1 cut(s)	224
FspBI	CTAG	1 cut(s)	275
GsaI	CCCAGC	1 cut(s)	142
HaeIII	GGCC	3 cut(s)	95, 125, 377
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	85, 146
HincII	GTYRAC	2 cut(s)	135, 369
HindII	GTYRAC	2 cut(s)	135, 369
HinfI	GANTC	3 cut(s)	314, 329, 365
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	53, 352
Hpy166II	GTNNAC	2 cut(s)	135, 369
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	2 cut(s)	135, 369
HpyAV	CCTTC	1 cut(s)	227
HpyCH4V	TGCA	2 cut(s)	81, 176
HpyF3I	CTNAG	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	85, 146
LmnI	GCTCC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	177, 239, 340, 346
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	3 cut(s)	308, 323, 374
MnlI	CCTC	5 cut(s)	26, 39, 148, 190, 280
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	2 cut(s)	128, 149
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
NlaIII	CATG	2 cut(s)	85, 146
NlaIV	GGNNCC	2 cut(s)	75, 253
NspV	TTCGAA	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	70
PleI	GAGTC	3 cut(s)	308, 323, 373
PpsI	GAGTC	3 cut(s)	308, 323, 373
Psp6I	CCWGG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	75, 253
PspPI	GGNCC	2 cut(s)	93, 252
SalI	GTCGAC	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	128, 149
Sau96I	GGNCC	2 cut(s)	93, 252
SchI	GAGTC	3 cut(s)	308, 323, 374
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	3 cut(s)	7, 25, 219
SfuI	TTCGAA	1 cut(s)	243
SinI	GGWCC	1 cut(s)	252
Sse9I	AATT	4 cut(s)	177, 239, 340, 346
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	63
TaqI	TCGA	3 cut(s)	104, 134, 243
TasI	AATT	4 cut(s)	177, 239, 340, 346
Tru1I	TTAA	2 cut(s)	128, 149
Tru9I	TTAA	2 cut(s)	128, 149
TscAI	CASTG	2 cut(s)	199, 213
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	199, 213
Van91I	CCANNNNNTGG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	2 cut(s)	239, 340
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.