Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010802

Physical Location & Seq

Genomic Coordinates Reverse (-)

9804417 .. 9805967

Gene Structure 1551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1055800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGTACTGCATGGAAGCAAGGGCCTTGAAATCGAGTCTGCGCAGAGAACTGGCCGTGAAGTCGACCCAGCATGTTCTGTTGGAGGAACTTTGGTGTGCTACTGGAATTTCTGGTGTGCCCAGTGAGGATTTTTCAGTGGATGACCTTCTTGACCTCTCCAATGACGAATTCGGAAACGGGTCCGTTGAAGAGGAAGGAGAAGAAAGAGACTCAGTTTCTGTGGATGATGAAACCTCCAATTCAAGCAATTCGGTCTTGGCTGACTCCGACTCCGGTCTGGCAACCCAGCTCGTAGTTCCGGACGATGATTTAGCAGAGCTTGAATGGGTTTCTCATTTTGTGGACGATTCCCTCCCTGACCTCTCTCTATTACACACAATTGGTGTCCAAAAACCGGAAGCTCTTCTGGCGAACCGGTCTGAATCGGAACCCAAACCGGCTCAATTAAGAGCTTCTTTGTTTCCTTTTGAAGTTCCGGTCAAACCTAGAACCAAACGTTGCAGACTGGCCAGCCGGGATTGGTCCTTGTCCTCTTCATCTTCACCGTCGTCGCCTTCTTCTTCTTCGGGTTCGGGGTTATCATTTTCCACCCCTTGTCTTATCTTCAACCCGGTTCAAAGCATGCACGTATTTGTTGGTGAACCGGCGGCCAAGAAACAAAAGAAAAAACCGGCGGTCCAAACAGGGGAGGGTTCAATTGGGGGCCAGTTTCAGCGGAGGTGCAGTCATTGCCAAGTACAGAAGACTCCACAATGGAGAACTGGTCCACTCGGTCCTAAAACGTTGTGTAATGCGTGCGGCGTTCGGTTCAAGTCCGGCCGGCTTTTCCCGGAGTATAGGCCGGCTTGTAGCCCGACTTTCTCTGGTGATGTCCACTCGAATAGTCACCGTAAAGTGTTGGAGATGAGGAAGAGGAAAGAGGTTGGCGAGCCCGAACCGCGGTTGAACCGAATGATTCGGAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

324

Amino Acids

35.5

Weight (kDa)

5.88

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	242 - 275	1.7e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36240
fragaria_vesca	FvH4_2g10220 FvH4_2g10220 FvH4_2g10220
malus_domestica	MD05G1055800.v1.1 MD10G1064300.v1.1
prunus_persica	Prupe.8G086100_v2.0.a1
pyrus_communis	pycom05g04720 pycom10g05020
rosa_chinensis	RchiOBHm_Chr6g0267451
rosa_laevigata	RLG00000014002
rosa_multiflora	Rmu_co8362579.1_g000001 Rmu_sc0007301.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200760
rosa_rugosa	Rorug06G0032800
rosa_samantha	Rh6AG154100 Rh6BG154400 Rh6CG149900 Rh6DG139600
rosa_wichuraiana	Rw6G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	65
AccII	CGCG	1 cut(s)	943
AccIII	TCCGGA	1 cut(s)	301
AciI	CCGC	6 cut(s)	650, 677, 718, 801, 941, 943
AclI	AACGTT	2 cut(s)	499, 785
AcoI	YGGCCR	4 cut(s)	54, 510, 651, 820
AcsI	RAATTY	2 cut(s)	108, 170
AfaI	GTAC	2 cut(s)	8, 741
AfiI	CCNNNNNNNGG	3 cut(s)	397, 688, 942
AgeI	ACCGGT	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	4 cut(s)	292, 322, 404, 455
AluI	AGCT	4 cut(s)	292, 322, 404, 455
Alw26I	GTCTC	1 cut(s)	204
AlwNI	CAGNNNCTG	1 cut(s)	221
Aor13HI	TCCGGA	1 cut(s)	301
AoxI	GGCC	7 cut(s)	24, 54, 510, 651, 706, 820, 842
ApoI	RAATTY	2 cut(s)	108, 170
AsiGI	ACCGGT	1 cut(s)	417
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	7 cut(s)	24, 183, 525, 679, 706, 767, 776
AsuC2I	CCSGG	3 cut(s)	518, 614, 833
AsuHPI	GGTGA	4 cut(s)	537, 653, 881, 881
AvaII	GGWCC	5 cut(s)	183, 525, 679, 767, 776
BaeGI	GKGCMC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	936
BbsI	GAAGAC	1 cut(s)	752
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	3 cut(s)	518, 614, 833
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	489
BisI	GCNGC	2 cut(s)	651, 802
BlsI	GCNGC	2 cut(s)	652, 803
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	3 cut(s)	518, 614, 833
Bme18I	GGWCC	5 cut(s)	183, 525, 679, 767, 776
BmgT120I	GGNCC	7 cut(s)	24, 183, 525, 679, 706, 767, 776
BmiI	GGNNCC	3 cut(s)	184, 432, 707
BmrFI	CCNGG	3 cut(s)	518, 614, 833
BmrI	ACTGGG	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	117
BoxI	GACNNNNGTC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	752
BpuMI	CCSGG	3 cut(s)	518, 614, 833
BsaAI	YACGTR	1 cut(s)	631
BsaJI	CCNNGG	1 cut(s)	941
BsaWI	WCCGGW	5 cut(s)	275, 301, 397, 417, 478
BsaXI	ACNNNNNCTCC	6 cut(s)	257, 287, 712, 742, 751, 781
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 688, 942
Bse118I	RCCGGY	6 cut(s)	417, 439, 646, 673, 822, 844
Bse1I	ACTGG	6 cut(s)	57, 109, 123, 513, 709, 769
Bse3DI	GCAATG	1 cut(s)	730
BseAI	TCCGGA	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	941
BseGI	GGATG	2 cut(s)	148, 232
BseLI	CCNNNNNNNGG	3 cut(s)	397, 688, 942
BseMI	GCAATG	1 cut(s)	730
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	6 cut(s)	57, 109, 123, 513, 709, 769
BseSI	GKGCMC	1 cut(s)	123
BseX3I	CGGCCG	1 cut(s)	820
BseYI	CCCAGC	2 cut(s)	69, 288
BsgI	GTGCAG	1 cut(s)	745
Bsh1236I	CGCG	1 cut(s)	943
Bsh1285I	CGRYCG	1 cut(s)	823
BshFI	GGCC	7 cut(s)	26, 56, 512, 653, 708, 822, 844
BshTI	ACCGGT	1 cut(s)	417
BsiEI	CGRYCG	1 cut(s)	823
BslI	CCNNNNNNNGG	3 cut(s)	397, 688, 942
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	7 cut(s)	26, 56, 512, 653, 708, 822, 844
Bsp1286I	GDGCHC	2 cut(s)	123, 936
Bsp13I	TCCGGA	1 cut(s)	301
BspACI	CCGC	6 cut(s)	650, 677, 718, 801, 941, 943
BspANI	GGCC	7 cut(s)	26, 56, 512, 653, 708, 822, 844
BspCNI	CTCAG	1 cut(s)	227
BspEI	TCCGGA	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	943
BspLI	GGNNCC	3 cut(s)	184, 432, 707
BspQI	GCTCTTC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	730
BsrFI	RCCGGY	6 cut(s)	417, 439, 646, 673, 822, 844
BsrI	ACTGG	6 cut(s)	57, 109, 123, 513, 709, 769
BssAI	RCCGGY	6 cut(s)	417, 439, 646, 673, 822, 844
BssECI	CCNNGG	1 cut(s)	941
Bst4CI	ACNGT	2 cut(s)	549, 893
Bst6I	CTCTTC	4 cut(s)	186, 411, 541, 908
BstAPI	GCANNNNNTGC	1 cut(s)	732
BstBAI	YACGTR	1 cut(s)	631
BstC8I	GCNNGC	6 cut(s)	514, 626, 799, 824, 846, 932
BstDEI	CTNAG	1 cut(s)	214
BstDSI	CCRYGG	1 cut(s)	941
BstF5I	GGATG	2 cut(s)	148, 232
BstFNI	CGCG	1 cut(s)	943
BstHHI	GCGC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	204
BstMCI	CGRYCG	1 cut(s)	823
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 732, 940
BstNSI	RCATGY	2 cut(s)	77, 628
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	3 cut(s)	516, 612, 831
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	1 cut(s)	943
BstV2I	GAAGAC	1 cut(s)	752
BstZI	CGGCCG	1 cut(s)	820
BsuRI	GGCC	7 cut(s)	26, 56, 512, 653, 708, 822, 844
BtgI	CCRYGG	1 cut(s)	941
BtsCI	GGATG	2 cut(s)	148, 232
BtsIMutI	CAGTG	2 cut(s)	130, 144
Cac8I	GCNNGC	6 cut(s)	514, 626, 799, 824, 846, 932
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	6 cut(s)	417, 439, 646, 673, 822, 844
Cfr13I	GGNCC	7 cut(s)	24, 183, 525, 679, 706, 767, 776
Cfr42I	CCGCGG	1 cut(s)	944
Csp6I	GTAC	2 cut(s)	7, 740
CspAI	ACCGGT	1 cut(s)	417
CviAII	CATG	3 cut(s)	13, 74, 625
CviQI	GTAC	2 cut(s)	7, 740
DdeI	CTNAG	1 cut(s)	214
EaeI	YGGCCR	4 cut(s)	54, 510, 651, 820
EagI	CGGCCG	1 cut(s)	820
Eam1104I	CTCTTC	4 cut(s)	186, 411, 541, 908
EarI	CTCTTC	4 cut(s)	186, 411, 541, 908
EclXI	CGGCCG	1 cut(s)	820
Eco24I	GRGCYC	1 cut(s)	936
Eco47I	GGWCC	5 cut(s)	183, 525, 679, 767, 776
Eco52I	CGGCCG	1 cut(s)	820
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	936
FaeI	CATG	3 cut(s)	16, 77, 628
FaiI	YATR	4 cut(s)	14, 75, 626, 840
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FatI	CATG	3 cut(s)	12, 73, 624
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	651, 802
FokI	GGATG	2 cut(s)	155, 239
FriOI	GRGCYC	1 cut(s)	936
Fsp4HI	GCNGC	2 cut(s)	651, 802
FspBI	CTAG	1 cut(s)	489
FspI	TGCGCA	1 cut(s)	44
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	2 cut(s)	651, 802
GsaI	CCCAGC	2 cut(s)	73, 292
HaeIII	GGCC	7 cut(s)	26, 56, 512, 653, 708, 822, 844
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	16, 77, 628
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	8 cut(s)	37, 212, 266, 272, 350, 425, 748, 958
HphI	GGTGA	4 cut(s)	537, 653, 881, 881
Hpy166II	GTNNAC	5 cut(s)	66, 346, 644, 770, 877
Hpy188I	TCNGA	5 cut(s)	176, 271, 424, 430, 963
Hpy188III	TCNNGA	2 cut(s)	152, 302
Hpy8I	GTNNAC	5 cut(s)	66, 346, 644, 770, 877
Hpy99I	CGWCG	2 cut(s)	553, 556
HpyAV	CCTTC	3 cut(s)	158, 191, 567
HpyCH4III	ACNGT	2 cut(s)	549, 893
HpyCH4IV	ACGT	3 cut(s)	499, 630, 785
HpyCH4V	TGCA	4 cut(s)	12, 504, 628, 726
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 732, 940
HpyF3I	CTNAG	1 cut(s)	214
HpySE526I	ACGT	3 cut(s)	499, 630, 785
Hsp92II	CATG	3 cut(s)	16, 77, 628
HspAI	GCGC	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	301
KroI	GCCGGC	2 cut(s)	822, 844
KroNI	GCCGGC	2 cut(s)	824, 846
KspI	CCGCGG	1 cut(s)	944
LguI	GCTCTTC	1 cut(s)	411
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	3 cut(s)	499, 630, 785
MaeIII	GTNAC	1 cut(s)	887
MfeI	CAATTG	2 cut(s)	381, 699
MhlI	GDGCHC	2 cut(s)	123, 936
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	7 cut(s)	108, 170, 241, 250, 381, 446, 699
MluNI	TGGCCA	1 cut(s)	512
MlyI	GAGTC	5 cut(s)	46, 206, 260, 266, 742
MmeI	TCCRAC	3 cut(s)	63, 294, 882
Mox20I	TGGCCA	1 cut(s)	512
MroI	TCCGGA	1 cut(s)	301
MroNI	GCCGGC	2 cut(s)	822, 844
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	2 cut(s)	449, 970
Msp20I	TGGCCA	1 cut(s)	512
MspA1I	CMGCKG	2 cut(s)	718, 943
MspR9I	CCNGG	3 cut(s)	518, 614, 833
MunI	CAATTG	2 cut(s)	381, 699
MvnI	CGCG	1 cut(s)	943
MwoI	GCNNNNNNNGC	3 cut(s)	410, 732, 940
NaeI	GCCGGC	2 cut(s)	824, 846
NciI	CCSGG	3 cut(s)	518, 614, 833
NgoMIV	GCCGGC	2 cut(s)	822, 844
NlaIII	CATG	3 cut(s)	16, 77, 628
NlaIV	GGNNCC	3 cut(s)	184, 432, 707
NmuCI	GTSAC	1 cut(s)	887
NsbI	TGCGCA	1 cut(s)	44
NspI	RCATGY	2 cut(s)	77, 628
PaeI	GCATGC	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	411
PdiI	GCCGGC	2 cut(s)	824, 846
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	350, 425, 958
PfoI	TCCNGGA	1 cut(s)	831
PinAI	ACCGGT	1 cut(s)	417
PkrI	GCNGC	2 cut(s)	652, 803
PleI	GAGTC	5 cut(s)	45, 206, 260, 266, 742
PpsI	GAGTC	5 cut(s)	45, 206, 260, 266, 742
Ppu21I	YACGTR	1 cut(s)	631
PshAI	GACNNNNGTC	1 cut(s)	276
Psp1406I	AACGTT	2 cut(s)	499, 785
PspFI	CCCAGC	2 cut(s)	69, 288
PspN4I	GGNNCC	3 cut(s)	184, 432, 707
PspPI	GGNCC	7 cut(s)	24, 183, 525, 679, 706, 767, 776
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	8, 741
RsaNI	GTAC	2 cut(s)	7, 740
SacII	CCGCGG	1 cut(s)	944
SalI	GTCGAC	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	449, 970
SatI	GCNGC	2 cut(s)	651, 802
Sau96I	GGNCC	7 cut(s)	24, 183, 525, 679, 706, 767, 776
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	5 cut(s)	46, 206, 260, 266, 742
ScrFI	CCNGG	3 cut(s)	518, 614, 833
SduI	GDGCHC	2 cut(s)	123, 936
Sfr303I	CCGCGG	1 cut(s)	944
SgrBI	CCGCGG	1 cut(s)	944
SinI	GGWCC	5 cut(s)	183, 525, 679, 767, 776
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	7 cut(s)	108, 170, 241, 250, 381, 446, 699
SsiI	CCGC	6 cut(s)	650, 677, 718, 801, 941, 943
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	3 cut(s)	516, 612, 831
TaaI	ACNGT	2 cut(s)	549, 893
TaiI	ACGT	3 cut(s)	502, 633, 788
TaqI	TCGA	3 cut(s)	35, 65, 881
TaqII	GACCGA	2 cut(s)	244, 764
TasI	AATT	7 cut(s)	108, 170, 241, 250, 381, 446, 699
TatI	WGTACW	2 cut(s)	6, 739
TauI	GCSGC	2 cut(s)	653, 804
TfiI	GAWTC	3 cut(s)	350, 425, 958
Tru1I	TTAA	2 cut(s)	449, 970
Tru9I	TTAA	2 cut(s)	449, 970
TscAI	CASTG	2 cut(s)	130, 144
TseFI	GTSAC	1 cut(s)	887
Tsp45I	GTSAC	1 cut(s)	887
TspDTI	ATGAA	2 cut(s)	246, 528
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	2 cut(s)	130, 144
VpaK11BI	GGWCC	5 cut(s)	183, 525, 679, 767, 776
XapI	RAATTY	2 cut(s)	108, 170
XceI	RCATGY	2 cut(s)	77, 628
XmiI	GTMKAC	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	489
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.