Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010802

Physical Location & Seq

Genomic Coordinates Reverse (-)

11910555 .. 11912599

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G086100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGCTCTGCACAAAGGCTTTGAAATCAAGTTTACGCAGAGAACTGACCTTGAAGTCGAACCAGCAAGCTTTGATTGATGAGTTTTGGTGCGCCACTGGAATTTCTGGTGTACCCAGTGAAGATTTTTCAGTGGACGACCTTCTTGACCTCTCTAATGGCGAATTCGAAGATGGGTCTGTTGAAGAAGAAGAAGAAGAAGAAAAAGACTCAGTTTCTGTGGATGATGAAAGTTCCAATTCAAGCAACTTTGTCTCTGCCGACTCTGAGTCTGCTCTGGCCAGCCAACTCTTAGTCCCGGATGATGATTTAGCAGGGCTTGAATGGGTTTCTCACTTTGCGGATGATTCTCTGTTAGACCTCTCTCTGCTTCACCCAGTCGGTACCCAAAAACCGGAGGCTCTTGCCTTGACCCCGTCTGAACCGGAGGCCAAACCGGTTCAATCAAGACCCACATGGTTTCCTAAACAAGTTCCAGTGAAACCCAGGAGCAAGCGTTGCAGACCGGCCAGTCGAGTTTGGTCGTACCCGTCTTCGTCTTCACCATCGTCGTCGTCTTCTTGTTCTTCTGGGTTTTCATTTTCAACGCCTTGTCTTATCTTCAACAACCCGGTTCACAGCGCGGACGTGTTTGTCGGTGAACCGGCGACCAAGAAACAGAAGAAAAAACCGGCGGTTCAAACCGGGGTCGACGGTTCAGTTGGGGTACAGTTTCAGAGGAGGTGTAGTCATTGCCATGTTCAAAAGACCCCACAATGGAGAACCGGTCCACTTGGTGCCAAAACTCTATGTAATGCGTGCGGGGTCCGGTTCAAGTCTGGGCGGCTTTTTCCGGAGTATAGACCTGCATGCAGTCCGACTTTTTCTGGTGACGTCCACTCGAATAGTCACCGCAAAGTGTTGGAGATGAGGAAGAGAAAAGAGGCGGGCGGACCCGAGCCCGGGTTGAACCGAGTAATTCCAAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

324

Amino Acids

35.24

Weight (kDa)

5.73

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36240
fragaria_vesca	FvH4_2g10220 FvH4_2g10220 FvH4_2g10220
malus_domestica	MD05G1055800.v1.1 MD10G1064300.v1.1
prunus_persica	Prupe.8G086100_v2.0.a1
pyrus_communis	pycom05g04720 pycom10g05020
rosa_chinensis	RchiOBHm_Chr6g0267451
rosa_laevigata	RLG00000014002
rosa_multiflora	Rmu_co8362579.1_g000001 Rmu_sc0007301.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200760
rosa_rugosa	Rorug06G0032800
rosa_samantha	Rh6AG154100 Rh6BG154400 Rh6CG149900 Rh6DG139600
rosa_wichuraiana	Rw6G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	55, 510, 632
AatII	GACGTC	1 cut(s)	876
Acc36I	ACCTGC	1 cut(s)	853
Acc65I	GGTACC	1 cut(s)	383
AccB1I	GGYRCC	2 cut(s)	383, 776
AccI	GTMKAC	1 cut(s)	690
AccII	CGCG	1 cut(s)	623
AccIII	TCCGGA	1 cut(s)	832
AciI	CCGC	8 cut(s)	341, 623, 674, 801, 823, 892, 926, 930
AcoI	YGGCCR	2 cut(s)	279, 507
AcsI	RAATTY	2 cut(s)	102, 164
AcyI	GRCGYC	1 cut(s)	873
AdeI	CACNNNGTG	1 cut(s)	776
AfaI	GTAC	4 cut(s)	114, 385, 527, 708
AfiI	CCNNNNNNNGG	4 cut(s)	394, 756, 941, 942
AflIII	ACRYGT	1 cut(s)	627
AgeI	ACCGGT	2 cut(s)	436, 764
AhdI	GACNNNNNGTC	1 cut(s)	268
AjiI	CACGTC	1 cut(s)	628
AjnI	CCWGG	1 cut(s)	485
AluBI	AGCT	2 cut(s)	7, 71
AluI	AGCT	2 cut(s)	7, 71
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	259
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	2 cut(s)	935, 941
Aor13HI	TCCGGA	1 cut(s)	832
AoxI	GGCC	3 cut(s)	279, 429, 507
ApoI	RAATTY	2 cut(s)	102, 164
AsiGI	ACCGGT	2 cut(s)	436, 764
Asp718I	GGTACC	1 cut(s)	383
AspLEI	GCGC	2 cut(s)	95, 623
AspS9I	GGNCC	3 cut(s)	767, 805, 932
AsuC2I	CCSGG	5 cut(s)	299, 611, 685, 942, 943
AsuHPI	GGTGA	5 cut(s)	365, 534, 650, 881, 881
AsuII	TTCGAA	1 cut(s)	168
AvaI	CYCGRG	2 cut(s)	935, 941
AvaII	GGWCC	3 cut(s)	767, 805, 932
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	2 cut(s)	383, 776
BanII	GRGCYC	2 cut(s)	9, 942
BbsI	GAAGAC	3 cut(s)	525, 531, 549
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	2 cut(s)	167, 553
BciT130I	CCWGG	1 cut(s)	487
BcnI	CCSGG	5 cut(s)	299, 611, 685, 942, 943
BcoDI	GTCTC	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	853
BisI	GCNGC	1 cut(s)	824
BlsI	GCNGC	1 cut(s)	825
Bme1390I	CCNGG	6 cut(s)	299, 487, 611, 685, 942, 943
Bme18I	GGWCC	3 cut(s)	767, 805, 932
BmeRI	GACNNNNNGTC	1 cut(s)	268
BmeT110I	CYCGRG	2 cut(s)	935, 941
BmgBI	CACGTC	1 cut(s)	628
BmgT120I	GGNCC	3 cut(s)	767, 805, 932
BmiI	GGNNCC	4 cut(s)	385, 778, 806, 934
BmrFI	CCNGG	6 cut(s)	299, 487, 611, 685, 942, 943
BmrI	ACTGGG	2 cut(s)	111, 371
BmuI	ACTGGG	2 cut(s)	111, 371
BpiI	GAAGAC	3 cut(s)	525, 531, 549
Bpu14I	TTCGAA	1 cut(s)	168
BpuMI	CCSGG	5 cut(s)	299, 611, 685, 942, 943
BsaHI	GRCGYC	1 cut(s)	873
BsaJI	CCNNGG	3 cut(s)	485, 684, 941
BsaWI	WCCGGW	6 cut(s)	394, 424, 436, 764, 807, 832
BsaXI	ACNNNNNCTCC	6 cut(s)	481, 511, 712, 742, 751, 781
Bsc4I	CCNNNNNNNGG	4 cut(s)	394, 756, 941, 942
Bse118I	RCCGGY	5 cut(s)	436, 505, 643, 670, 764
Bse1I	ACTGG	5 cut(s)	103, 117, 377, 476, 510
Bse3DI	GCAATG	1 cut(s)	730
BseAI	TCCGGA	1 cut(s)	832
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	3 cut(s)	485, 684, 941
BseGI	GGATG	3 cut(s)	229, 307, 349
BseLI	CCNNNNNNNGG	4 cut(s)	394, 756, 941, 942
BseMI	GCAATG	1 cut(s)	730
BseMII	CTCAG	2 cut(s)	225, 258
BseNI	ACTGG	5 cut(s)	103, 117, 377, 476, 510
BseRI	GAGGAG	1 cut(s)	733
Bsh1236I	CGCG	1 cut(s)	623
BshFI	GGCC	3 cut(s)	281, 431, 509
BshNI	GGYRCC	2 cut(s)	383, 776
BshTI	ACCGGT	2 cut(s)	436, 764
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	2 cut(s)	935, 941
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	4 cut(s)	394, 756, 941, 942
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	281, 431, 509
BsoBI	CYCGRG	2 cut(s)	935, 941
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	9, 942
Bsp13I	TCCGGA	1 cut(s)	832
BspACI	CCGC	8 cut(s)	341, 623, 674, 801, 823, 892, 926, 930
BspANI	GGCC	3 cut(s)	281, 431, 509
BspCNI	CTCAG	2 cut(s)	224, 259
BspEI	TCCGGA	1 cut(s)	832
BspFNI	CGCG	1 cut(s)	623
BspLI	GGNNCC	4 cut(s)	385, 778, 806, 934
BspMI	ACCTGC	1 cut(s)	853
BspT104I	TTCGAA	1 cut(s)	168
BspT107I	GGYRCC	2 cut(s)	383, 776
BsrDI	GCAATG	1 cut(s)	730
BsrFI	RCCGGY	5 cut(s)	436, 505, 643, 670, 764
BsrI	ACTGG	5 cut(s)	103, 117, 377, 476, 510
BssAI	RCCGGY	5 cut(s)	436, 505, 643, 670, 764
BssECI	CCNNGG	3 cut(s)	485, 684, 941
BssNI	GRCGYC	1 cut(s)	873
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	2 cut(s)	695, 711
Bst6I	CTCTTC	1 cut(s)	908
BstACI	GRCGYC	1 cut(s)	873
BstAPI	GCANNNNNTGC	1 cut(s)	498
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	6 cut(s)	69, 283, 494, 799, 850, 928
BstDEI	CTNAG	3 cut(s)	211, 267, 292
BstF5I	GGATG	3 cut(s)	229, 307, 349
BstFNI	CGCG	1 cut(s)	623
BstHHI	GCGC	2 cut(s)	95, 623
BstMAI	GTCTC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	498
BstNI	CCWGG	1 cut(s)	487
BstNSI	RCATGY	1 cut(s)	852
BstSCI	CCNGG	6 cut(s)	297, 485, 609, 683, 940, 941
BstUI	CGCG	1 cut(s)	623
BstV2I	GAAGAC	3 cut(s)	525, 531, 549
BsuRI	GGCC	3 cut(s)	281, 431, 509
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	229, 307, 349
BtsIMutI	CAGTG	4 cut(s)	96, 124, 138, 483
BveI	ACCTGC	1 cut(s)	853
Cac8I	GCNNGC	6 cut(s)	69, 283, 494, 799, 850, 928
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	2 cut(s)	95, 623
Cfr10I	RCCGGY	5 cut(s)	436, 505, 643, 670, 764
Cfr13I	GGNCC	3 cut(s)	767, 805, 932
Cfr9I	CCCGGG	1 cut(s)	941
Csp6I	GTAC	4 cut(s)	113, 384, 526, 707
CspAI	ACCGGT	2 cut(s)	436, 764
CviAII	CATG	3 cut(s)	456, 737, 849
CviQI	GTAC	4 cut(s)	113, 384, 526, 707
DdeI	CTNAG	3 cut(s)	211, 267, 292
DraIII	CACNNNGTG	1 cut(s)	776
DrdI	GACNNNNNNGTC	3 cut(s)	55, 510, 632
DriI	GACNNNNNGTC	1 cut(s)	268
DseDI	GACNNNNNNGTC	3 cut(s)	55, 510, 632
EaeI	YGGCCR	2 cut(s)	279, 507
Eam1104I	CTCTTC	1 cut(s)	908
Eam1105I	GACNNNNNGTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	908
EciI	GGCGGA	1 cut(s)	945
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	2 cut(s)	9, 942
Eco47I	GGWCC	3 cut(s)	767, 805, 932
Eco53kI	GAGCTC	1 cut(s)	7
Eco88I	CYCGRG	2 cut(s)	935, 941
EcoICRI	GAGCTC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	485
EcoT38I	GRGCYC	2 cut(s)	9, 942
FaeI	CATG	3 cut(s)	459, 740, 852
FaiI	YATR	5 cut(s)	457, 738, 790, 840, 850
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	455, 736, 848
FauI	CCCGC	2 cut(s)	794, 919
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	1 cut(s)	824
FokI	GGATG	3 cut(s)	236, 314, 356
FriOI	GRGCYC	2 cut(s)	9, 942
Fsp4HI	GCNGC	1 cut(s)	824
GlaI	GCGC	2 cut(s)	94, 622
GluI	GCNGC	1 cut(s)	824
HaeIII	GGCC	3 cut(s)	281, 431, 509
HhaI	GCGC	2 cut(s)	95, 623
Hin1I	GRCGYC	1 cut(s)	873
Hin1II	CATG	3 cut(s)	459, 740, 852
Hin6I	GCGC	2 cut(s)	93, 621
HinP1I	GCGC	2 cut(s)	93, 621
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	4 cut(s)	209, 263, 269, 347
HphI	GGTGA	5 cut(s)	365, 534, 650, 881, 881
Hpy166II	GTNNAC	8 cut(s)	35, 113, 136, 616, 641, 691, 770, 877
Hpy188I	TCNGA	4 cut(s)	268, 421, 717, 858
Hpy188III	TCNNGA	3 cut(s)	146, 447, 833
Hpy8I	GTNNAC	8 cut(s)	35, 113, 136, 616, 641, 691, 770, 877
Hpy99I	CGWCG	3 cut(s)	553, 556, 695
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	695, 711
HpyCH4IV	ACGT	2 cut(s)	627, 873
HpyCH4V	TGCA	4 cut(s)	12, 501, 848, 852
HpyF10VI	GCNNNNNNNGC	1 cut(s)	498
HpyF3I	CTNAG	3 cut(s)	211, 267, 292
HpySE526I	ACGT	2 cut(s)	627, 873
Hsp92I	GRCGYC	1 cut(s)	873
Hsp92II	CATG	3 cut(s)	459, 740, 852
HspAI	GCGC	2 cut(s)	93, 621
Kpn2I	TCCGGA	1 cut(s)	832
KpnI	GGTACC	1 cut(s)	387
LmnI	GCTCC	2 cut(s)	4, 489
MaeII	ACGT	2 cut(s)	627, 873
MaeIII	GTNAC	2 cut(s)	869, 887
MhlI	GDGCHC	2 cut(s)	9, 942
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	4 cut(s)	102, 164, 238, 957
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	3 cut(s)	203, 257, 278
MmeI	TCCRAC	2 cut(s)	881, 882
MnlI	CCTC	8 cut(s)	161, 371, 391, 421, 711, 714, 903, 916
Mox20I	TGGCCA	1 cut(s)	281
MroI	TCCGGA	1 cut(s)	832
MscI	TGGCCA	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	735
Msp20I	TGGCCA	1 cut(s)	281
MspR9I	CCNGG	6 cut(s)	299, 487, 611, 685, 942, 943
MvaI	CCWGG	1 cut(s)	487
MvnI	CGCG	1 cut(s)	623
MwoI	GCNNNNNNNGC	1 cut(s)	498
NciI	CCSGG	5 cut(s)	299, 611, 685, 942, 943
NlaIII	CATG	3 cut(s)	459, 740, 852
NlaIV	GGNNCC	4 cut(s)	385, 778, 806, 934
NmuCI	GTSAC	2 cut(s)	869, 887
NspI	RCATGY	1 cut(s)	852
NspV	TTCGAA	1 cut(s)	168
PaeI	GCATGC	1 cut(s)	852
PfeI	GAWTC	1 cut(s)	347
PflFI	GACNNNGTC	1 cut(s)	415
PfoI	TCCNGGA	1 cut(s)	297
PinAI	ACCGGT	2 cut(s)	436, 764
PkrI	GCNGC	1 cut(s)	825
PleI	GAGTC	3 cut(s)	203, 257, 277
PpsI	GAGTC	3 cut(s)	203, 257, 277
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	4 cut(s)	385, 778, 806, 934
PspPI	GGNCC	3 cut(s)	767, 805, 932
PstNI	CAGNNNCTG	1 cut(s)	218
PsyI	GACNNNGTC	1 cut(s)	415
RsaI	GTAC	4 cut(s)	114, 385, 527, 708
RsaNI	GTAC	4 cut(s)	113, 384, 526, 707
RseI	CAYNNNNRTG	1 cut(s)	735
SacI	GAGCTC	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	689
SatI	GCNGC	1 cut(s)	824
Sau96I	GGNCC	3 cut(s)	767, 805, 932
SchI	GAGTC	3 cut(s)	203, 257, 278
ScrFI	CCNGG	6 cut(s)	299, 487, 611, 685, 942, 943
SduI	GDGCHC	2 cut(s)	9, 942
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	3 cut(s)	767, 805, 932
SmaI	CCCGGG	1 cut(s)	943
SmiMI	CAYNNNNRTG	1 cut(s)	735
SphI	GCATGC	1 cut(s)	852
Sse9I	AATT	4 cut(s)	102, 164, 238, 957
SsiI	CCGC	8 cut(s)	341, 623, 674, 801, 823, 892, 926, 930
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	6 cut(s)	297, 485, 609, 683, 940, 941
TaaI	ACNGT	2 cut(s)	695, 711
TaiI	ACGT	2 cut(s)	630, 876
TaqI	TCGA	5 cut(s)	59, 168, 514, 690, 881
TasI	AATT	4 cut(s)	102, 164, 238, 957
TauI	GCSGC	1 cut(s)	826
TfiI	GAWTC	1 cut(s)	347
TscAI	CASTG	4 cut(s)	103, 124, 138, 483
TseFI	GTSAC	2 cut(s)	869, 887
Tsp45I	GTSAC	2 cut(s)	869, 887
TspDTI	ATGAA	2 cut(s)	243, 567
TspMI	CCCGGG	1 cut(s)	941
TspRI	CASTG	4 cut(s)	103, 124, 138, 483
Tth111I	GACNNNGTC	1 cut(s)	415
VpaK11BI	GGWCC	3 cut(s)	767, 805, 932
XapI	RAATTY	2 cut(s)	102, 164
XceI	RCATGY	1 cut(s)	852
XmaI	CCCGGG	1 cut(s)	941
XmiI	GTMKAC	1 cut(s)	690
ZraI	GACGTC	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.