pycom10g05020

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
5279045 .. 5280109
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g05020.1

Sequence Viewer

Length: 969 bp
ATGGAGTACTGCATCGAAGCAAAGGCCTTGAAATCGAGTCTGCGCAGAGAACTGGCCGCGAAGTCGACCCAGCATGTTTTGTTGGAGGAGCTTTGGTGTGCTACTGGAATTTCCGGTGTGCCCTGTGAGGATTTTTCAGTGGACGACCTTCTTGACCTCTCCAATGGCGAATTCGAAGACGGGTCCGTTGAAGAAGAAGAAGAAGAAGAAAGAGAGTCAGTTTCTGTGGATGATGAAATTTCTAATTCAAGCAGTTTGGTCTTGCCCGACTCTGACTCTGGTCTGGCAACCCAACTCCTGGTTCCGGACGATGATTTAGCAGAGCTTGAATGGGTTTCCCATTTTGTGGACGATTCTCTACCGGACCTCTCTCTGTTACACACAATTGGTACCCAAAAACCAGATGCTCTTCTTATGAACCGGTTTGAACCGGAAACCAAACCGGTTCATTTAAGATCTCCTTTGTTTCCTTTTCAAGTTCCAGTCAAACCCAGAACCAAACGTTACAGACCGGCTAGCCGGGTTTGGTCCTCCTCCTCTTCATGTTCACCATCATCATCGCCTTGTTCTTCTGGGTTTTCATTTTCAACTCCTTGTCTTATCTTCAACCCGGTTCAAAGCATGGACGTGTTTGTTGGTGAACCGGCGGCTAAGAAACAAAAGAAAAAACCGGCGGTCCAAACAGGGGAGGGTTCAATTGTGGGACAGTTTCAGCGGAGGTGTAGTCATTGCCAAGTACAGAAGACTCCACAATGGAGAACCGGTCCGCTTGGTCCTAAAACATTGTGTAACGCATGCGGCGTCCGGTTCAAGTCTGGCCGGCTTTTTCCGGAGTATAGGCCGGCTTGTAGTCCCACTTTCTCTGGTGCTGTCCACTCGAATAGTCACCGTAAAGTGTTGGAGATGAGGAAGAGGAAAGATGTTGGCGAGCCCGAACCGCGGTTGAACCGAATGATTCGGAGTTTTTGA

Protein Analysis

323

Amino Acids

35.79

Weight (kDa)

5.75

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 241 - 274 1.7e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010802)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 44
Acc65I GGTACC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 389
AccB7I CCANNNNNTGG 2 cut(s) 298, 346
AccI GTMKAC 1 cut(s) 65
AccII CGCG 2 cut(s) 59, 940
AccIII TCCGGA 2 cut(s) 304, 829
AciI CCGC 8 cut(s) 57, 647, 674, 715, 767, 798, 938, 940
AclI AACGTT 1 cut(s) 502
AcoI YGGCCR 2 cut(s) 54, 817
AcsI RAATTY 3 cut(s) 108, 170, 237
AcyI GRCGYC 1 cut(s) 801
AfaI GTAC 3 cut(s) 8, 391, 738
AfiI CCNNNNNNNGG 5 cut(s) 298, 304, 346, 685, 939
AflIII ACRYGT 1 cut(s) 627
AgeI ACCGGT 3 cut(s) 420, 442, 761
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 1 cut(s) 297
AjuI GAANNNNNNNTTGG 4 cut(s) 155, 187, 285, 317
AluBI AGCT 2 cut(s) 91, 325
AluI AGCT 2 cut(s) 91, 325
AlwNI CAGNNNCTG 1 cut(s) 224
Aor13HI TCCGGA 2 cut(s) 304, 829
AoxI GGCC 4 cut(s) 24, 54, 817, 839
ApoI RAATTY 3 cut(s) 108, 170, 237
AsiGI ACCGGT 3 cut(s) 420, 442, 761
Asp718I GGTACC 1 cut(s) 389
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 6 cut(s) 183, 364, 528, 676, 764, 773
AsuC2I CCSGG 2 cut(s) 521, 611
AsuHPI GGTGA 3 cut(s) 540, 650, 878
AsuII TTCGAA 1 cut(s) 174
AsuNHI GCTAGC 1 cut(s) 515
AvaII GGWCC 6 cut(s) 183, 364, 528, 676, 764, 773
BaeGI GKGCMC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 933
BbsI GAAGAC 2 cut(s) 183, 749
BccI CCATC 1 cut(s) 559
BciT130I CCWGG 1 cut(s) 299
BcnI CCSGG 2 cut(s) 521, 611
BfaI CTAG 1 cut(s) 516
BglII AGATCT 1 cut(s) 455
BisI GCNGC 3 cut(s) 57, 648, 799
BlsI GCNGC 3 cut(s) 58, 649, 800
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 3 cut(s) 299, 521, 611
Bme18I GGWCC 6 cut(s) 183, 364, 528, 676, 764, 773
BmgBI CACGTC 1 cut(s) 628
BmgT120I GGNCC 6 cut(s) 183, 364, 528, 676, 764, 773
BmiI GGNNCC 3 cut(s) 184, 303, 391
BmrFI CCNGG 3 cut(s) 299, 521, 611
BmsI GCATC 2 cut(s) 21, 394
BmtI GCTAGC 1 cut(s) 519
BoxI GACNNNNGTC 1 cut(s) 279
BpiI GAAGAC 2 cut(s) 183, 749
Bpu14I TTCGAA 1 cut(s) 174
BpuMI CCSGG 2 cut(s) 521, 611
BsaHI GRCGYC 1 cut(s) 801
BsaJI CCNNGG 1 cut(s) 938
BsaWI WCCGGW 9 cut(s) 113, 304, 361, 420, 430, 442, 761, 804, 829
BsaXI ACNNNNNCTCC 6 cut(s) 80, 110, 709, 739, 748, 778
Bsc4I CCNNNNNNNGG 5 cut(s) 298, 304, 346, 685, 939
Bse118I RCCGGY 8 cut(s) 420, 442, 511, 643, 670, 761, 819, 841
Bse1I ACTGG 3 cut(s) 57, 109, 482
Bse3DI GCAATG 1 cut(s) 727
BseAI TCCGGA 2 cut(s) 304, 829
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 938
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 5 cut(s) 298, 304, 346, 685, 939
BseMI GCAATG 1 cut(s) 727
BseNI ACTGG 3 cut(s) 57, 109, 482
BseRI GAGGAG 3 cut(s) 101, 523, 526
BseSI GKGCMC 1 cut(s) 123
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 2 cut(s) 59, 940
BshFI GGCC 4 cut(s) 26, 56, 819, 841
BshNI GGYRCC 1 cut(s) 389
BshTI ACCGGT 3 cut(s) 420, 442, 761
BslFI GGGAC 2 cut(s) 717, 837
BslI CCNNNNNNNGG 5 cut(s) 298, 304, 346, 685, 939
BsmFI GGGAC 2 cut(s) 717, 837
BsnI GGCC 4 cut(s) 26, 56, 819, 841
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 123, 933
Bsp13I TCCGGA 2 cut(s) 304, 829
Bsp143I GATC 1 cut(s) 455
BspACI CCGC 8 cut(s) 57, 647, 674, 715, 767, 798, 938, 940
BspANI GGCC 4 cut(s) 26, 56, 819, 841
BspEI TCCGGA 2 cut(s) 304, 829
BspFNI CGCG 2 cut(s) 59, 940
BspLI GGNNCC 3 cut(s) 184, 303, 391
BspOI GCTAGC 1 cut(s) 519
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 727
BsrFI RCCGGY 8 cut(s) 420, 442, 511, 643, 670, 761, 819, 841
BsrI ACTGG 3 cut(s) 57, 109, 482
BssAI RCCGGY 8 cut(s) 420, 442, 511, 643, 670, 761, 819, 841
BssECI CCNNGG 1 cut(s) 938
BssMI GATC 1 cut(s) 455
BssNI GRCGYC 1 cut(s) 801
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 2 cut(s) 708, 890
Bst6I CTCTTC 3 cut(s) 414, 544, 905
BstACI GRCGYC 1 cut(s) 801
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 5 cut(s) 517, 796, 821, 843, 929
BstDEI CTNAG 1 cut(s) 651
BstDSI CCRYGG 1 cut(s) 938
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 2 cut(s) 59, 940
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 1 cut(s) 458
BstMBI GATC 1 cut(s) 455
BstMWI GCNNNNNNNGC 1 cut(s) 937
BstNI CCWGG 1 cut(s) 299
BstNSI RCATGY 2 cut(s) 77, 798
BstPAI GACNNNNGTC 1 cut(s) 279
BstSCI CCNGG 3 cut(s) 297, 519, 609
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 2 cut(s) 59, 940
BstV2I GAAGAC 2 cut(s) 183, 749
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
BsuRI GGCC 4 cut(s) 26, 56, 819, 841
BtgI CCRYGG 1 cut(s) 938
BtgZI GCGATG 1 cut(s) 543
BtrI CACGTC 1 cut(s) 628
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 5 cut(s) 517, 796, 821, 843, 929
CaiI CAGNNNCTG 1 cut(s) 224
CfoI GCGC 1 cut(s) 45
Cfr10I RCCGGY 8 cut(s) 420, 442, 511, 643, 670, 761, 819, 841
Cfr13I GGNCC 6 cut(s) 183, 364, 528, 676, 764, 773
Cfr42I CCGCGG 1 cut(s) 941
CpoI CGGWCCG 1 cut(s) 764
CseI GACGC 1 cut(s) 790
Csp6I GTAC 3 cut(s) 7, 390, 737
CspAI ACCGGT 3 cut(s) 420, 442, 761
CspI CGGWCCG 1 cut(s) 764
CviAII CATG 4 cut(s) 74, 543, 622, 795
CviQI GTAC 3 cut(s) 7, 390, 737
DdeI CTNAG 1 cut(s) 651
DpnI GATC 1 cut(s) 457
DpnII GATC 1 cut(s) 455
EaeI YGGCCR 2 cut(s) 54, 817
Eam1104I CTCTTC 3 cut(s) 414, 544, 905
EarI CTCTTC 3 cut(s) 414, 544, 905
Eco147I AGGCCT 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 933
Eco47I GGWCC 6 cut(s) 183, 364, 528, 676, 764, 773
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 933
FaeI CATG 4 cut(s) 77, 546, 625, 798
FaiI YATR 6 cut(s) 75, 416, 544, 623, 796, 837
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 2 cut(s) 717, 837
FatI CATG 4 cut(s) 73, 542, 621, 794
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 3 cut(s) 57, 648, 799
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 933
Fsp4HI GCNGC 3 cut(s) 57, 648, 799
FspBI CTAG 1 cut(s) 516
FspI TGCGCA 1 cut(s) 44
GlaI GCGC 1 cut(s) 44
GluI GCNGC 3 cut(s) 57, 648, 799
GsaI CCCAGC 1 cut(s) 73
HaeIII GGCC 4 cut(s) 26, 56, 819, 841
HgaI GACGC 1 cut(s) 790
HhaI GCGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 801
Hin1II CATG 4 cut(s) 77, 546, 625, 798
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 7 cut(s) 37, 215, 269, 275, 353, 745, 955
HphI GGTGA 3 cut(s) 540, 650, 878
Hpy166II GTNNAC 6 cut(s) 66, 142, 349, 548, 641, 874
Hpy188I TCNGA 2 cut(s) 274, 960
Hpy188III TCNNGA 3 cut(s) 152, 305, 830
Hpy8I GTNNAC 6 cut(s) 66, 142, 349, 548, 641, 874
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 708, 890
HpyCH4IV ACGT 2 cut(s) 502, 627
HpyCH4V TGCA 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 1 cut(s) 937
HpyF3I CTNAG 1 cut(s) 651
HpySE526I ACGT 2 cut(s) 502, 627
Hsp92I GRCGYC 1 cut(s) 801
Hsp92II CATG 4 cut(s) 77, 546, 625, 798
HspAI GCGC 1 cut(s) 43
Kpn2I TCCGGA 2 cut(s) 304, 829
KpnI GGTACC 1 cut(s) 393
KroI GCCGGC 2 cut(s) 819, 841
KroNI GCCGGC 2 cut(s) 821, 843
KspI CCGCGG 1 cut(s) 941
Kzo9I GATC 1 cut(s) 455
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 88
LweI GCATC 2 cut(s) 21, 394
MaeI CTAG 1 cut(s) 516
MaeII ACGT 2 cut(s) 502, 627
MaeIII GTNAC 4 cut(s) 375, 503, 788, 884
MalI GATC 1 cut(s) 457
MboI GATC 1 cut(s) 455
MfeI CAATTG 2 cut(s) 384, 696
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 2 cut(s) 123, 933
MluCI AATT 6 cut(s) 108, 170, 237, 244, 384, 696
MlyI GAGTC 5 cut(s) 46, 224, 263, 269, 739
MmeI TCCRAC 2 cut(s) 63, 879
MroI TCCGGA 2 cut(s) 304, 829
MroNI GCCGGC 2 cut(s) 819, 841
MseI TTAA 1 cut(s) 452
MslI CAYNNNNRTG 1 cut(s) 626
MspA1I CMGCKG 2 cut(s) 715, 940
MspR9I CCNGG 3 cut(s) 299, 521, 611
MunI CAATTG 2 cut(s) 384, 696
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 2 cut(s) 59, 940
MwoI GCNNNNNNNGC 1 cut(s) 937
NaeI GCCGGC 2 cut(s) 821, 843
NciI CCSGG 2 cut(s) 521, 611
NdeII GATC 1 cut(s) 455
NgoMIV GCCGGC 2 cut(s) 819, 841
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 4 cut(s) 77, 546, 625, 798
NlaIV GGNNCC 3 cut(s) 184, 303, 391
NmuCI GTSAC 1 cut(s) 884
NsbI TGCGCA 1 cut(s) 44
NspI RCATGY 2 cut(s) 77, 798
NspV TTCGAA 1 cut(s) 174
PaeI GCATGC 1 cut(s) 798
PceI AGGCCT 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 798
PdiI GCCGGC 2 cut(s) 821, 843
PfeI GAWTC 2 cut(s) 353, 955
PflMI CCANNNNNTGG 2 cut(s) 298, 346
PinAI ACCGGT 3 cut(s) 420, 442, 761
PkrI GCNGC 3 cut(s) 58, 649, 800
PleI GAGTC 5 cut(s) 45, 223, 263, 269, 739
PpsI GAGTC 5 cut(s) 45, 223, 263, 269, 739
PshAI GACNNNNGTC 1 cut(s) 279
Psp1406I AACGTT 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 3 cut(s) 184, 303, 391
PspPI GGNCC 6 cut(s) 183, 364, 528, 676, 764, 773
PstNI CAGNNNCTG 1 cut(s) 224
PsuI RGATCY 1 cut(s) 455
RsaI GTAC 3 cut(s) 8, 391, 738
RsaNI GTAC 3 cut(s) 7, 390, 737
RseI CAYNNNNRTG 1 cut(s) 626
Rsr2I CGGWCCG 1 cut(s) 764
RsrII CGGWCCG 1 cut(s) 764
SacII CCGCGG 1 cut(s) 941
SalI GTCGAC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 3 cut(s) 57, 648, 799
Sau3AI GATC 1 cut(s) 455
Sau96I GGNCC 6 cut(s) 183, 364, 528, 676, 764, 773
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 5 cut(s) 46, 224, 263, 269, 739
ScrFI CCNGG 3 cut(s) 299, 521, 611
SduI GDGCHC 2 cut(s) 123, 933
SetI ASST 8 cut(s) 93, 150, 159, 327, 369, 505, 630, 722
SfaNI GCATC 2 cut(s) 21, 394
Sfr303I CCGCGG 1 cut(s) 941
SfuI TTCGAA 1 cut(s) 174
SgrBI CCGCGG 1 cut(s) 941
SinI GGWCC 6 cut(s) 183, 364, 528, 676, 764, 773
SmiMI CAYNNNNRTG 1 cut(s) 626
SphI GCATGC 1 cut(s) 798
Sse9I AATT 6 cut(s) 108, 170, 237, 244, 384, 696
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 8 cut(s) 57, 647, 674, 715, 767, 798, 938, 940
SspMI CTAG 1 cut(s) 516
StuI AGGCCT 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 297, 519, 609
TaaI ACNGT 2 cut(s) 708, 890
TaiI ACGT 2 cut(s) 505, 630
TaqI TCGA 5 cut(s) 15, 35, 65, 174, 878
TasI AATT 6 cut(s) 108, 170, 237, 244, 384, 696
TatI WGTACW 2 cut(s) 6, 736
TauI GCSGC 3 cut(s) 59, 650, 801
TfiI GAWTC 2 cut(s) 353, 955
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 884
Tsp45I GTSAC 1 cut(s) 884
TspDTI ATGAA 5 cut(s) 249, 431, 437, 531, 570
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 2 cut(s) 298, 346
VpaK11BI GGWCC 6 cut(s) 183, 364, 528, 676, 764, 773
XapI RAATTY 3 cut(s) 108, 170, 237
XceI RCATGY 2 cut(s) 77, 798
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 1 cut(s) 516
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.