Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010802

Physical Location & Seq

Genomic Coordinates Reverse (-)

5568238 .. 5569304

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGTACTGCATGGAAGCAAGGGCCTTGAAATCGAGTCTGCGCAGAGAACTGGCCGTGAAGTCGACCCAGCATGTTCTGTTGGAGGAACTTTGGTGTGCTACTGGAATTTCTGGTGTGCCCTGTGAGGATTTTTCAGTGGATGACCTTCTTGACCTCTCCAATGGCGAATTCGGAGACGGGTCCGTTGAAGAAGAAGGAGAAGAAAGAGACTCAGTTTCTGTGGATGATGAAACTTCCAATTCAAGCAATTCGGTCTTGGCTGACTCCGACTCCGGTCTGGCAACCCAGCTCTTAGTTCCGGACGATGATTTAGCAGAGCTTGAATGGGTTTCTCATTTTGTGGACGATTCTCTTCCGGACCTCTCTCTATTACACACAATTGGCGTCCAAAAACCGGAAGCTCTTCCTGCGAACCGGTCTGAACCGGAACCCAAACCGGCTCAATTAAGAGCTTCTCTGTTTCCTTTTGAAGTTCCGGTCAAACCTAGAACCAAACGTTGCAGACTGGCCAGCCGGGATTGGTCCTTGTCCTCTTCATCTTCACCGTCGTCGCCTTCTTCTTCTTCGGGTTCGGAGTTTTCATTTTCAACCTCTTGTCTTATCTTCAACCCGGTTCAATGCATGCACGTATTTGTTGGTGAACCGGCGGCTAAGAAACAAAAGAAAAAACCGGCGGTCCAAACAGGGGAGGGTTCAATTGGGGGACAGTTTCAGCGGAGGTGTAGTCATTGCCAAGTTCAGAAGACTCCACAATGGAGAACTGGTCCGCTTGGTCCTAAAACGTTGTGTAATGCATGCGGCGTTCGGTTCAAGTCTGGCCGGCTTTTCCCGGAGTATAGGCCGGCTTGTAGCCCGACCTTCTCCGGTGATGTCCACTCGAATAGTCACCGTAAGGTGTTGGAGATGAGGAAGAGGAAAGAGATTGGCGAGCCCGAACCGCGGTTGAACCGGATGATTCGGAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

324

Amino Acids

35.59

Weight (kDa)

5.75

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	242 - 275	1.7e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36240
fragaria_vesca	FvH4_2g10220 FvH4_2g10220 FvH4_2g10220
malus_domestica	MD05G1055800.v1.1 MD10G1064300.v1.1
prunus_persica	Prupe.8G086100_v2.0.a1
pyrus_communis	pycom05g04720 pycom10g05020
rosa_chinensis	RchiOBHm_Chr6g0267451
rosa_laevigata	RLG00000014002
rosa_multiflora	Rmu_co8362579.1_g000001 Rmu_sc0007301.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200760
rosa_rugosa	Rorug06G0032800
rosa_samantha	Rh6AG154100 Rh6BG154400 Rh6CG149900 Rh6DG139600
rosa_wichuraiana	Rw6G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	65
AccII	CGCG	1 cut(s)	943
AccIII	TCCGGA	2 cut(s)	301, 358
AciI	CCGC	7 cut(s)	650, 677, 718, 770, 801, 941, 943
AclI	AACGTT	2 cut(s)	499, 785
AcoI	YGGCCR	3 cut(s)	54, 510, 820
AcsI	RAATTY	2 cut(s)	108, 170
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	3 cut(s)	397, 688, 942
AgeI	ACCGGT	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	4 cut(s)	292, 322, 404, 455
AluI	AGCT	4 cut(s)	292, 322, 404, 455
Alw26I	GTCTC	2 cut(s)	171, 204
AlwNI	CAGNNNCTG	1 cut(s)	221
Aor13HI	TCCGGA	2 cut(s)	301, 358
AoxI	GGCC	5 cut(s)	24, 54, 510, 820, 842
ApoI	RAATTY	2 cut(s)	108, 170
AsiGI	ACCGGT	1 cut(s)	417
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	7 cut(s)	24, 183, 361, 525, 679, 767, 776
AsuC2I	CCSGG	3 cut(s)	518, 614, 833
AsuHPI	GGTGA	4 cut(s)	537, 653, 881, 881
AvaII	GGWCC	6 cut(s)	183, 361, 525, 679, 767, 776
BaeGI	GKGCMC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	936
BbsI	GAAGAC	1 cut(s)	752
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	3 cut(s)	518, 614, 833
BcoDI	GTCTC	2 cut(s)	171, 204
BfaI	CTAG	1 cut(s)	489
BisI	GCNGC	2 cut(s)	651, 802
BlsI	GCNGC	2 cut(s)	652, 803
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	3 cut(s)	518, 614, 833
Bme18I	GGWCC	6 cut(s)	183, 361, 525, 679, 767, 776
BmgT120I	GGNCC	7 cut(s)	24, 183, 361, 525, 679, 767, 776
BmiI	GGNNCC	2 cut(s)	184, 432
BmrFI	CCNGG	3 cut(s)	518, 614, 833
BoxI	GACNNNNGTC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	752
BpuMI	CCSGG	3 cut(s)	518, 614, 833
BsaAI	YACGTR	1 cut(s)	631
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	941
BsaWI	WCCGGW	9 cut(s)	275, 301, 358, 397, 417, 427, 478, 866, 951
BsaXI	ACNNNNNCTCC	6 cut(s)	257, 287, 712, 742, 751, 781
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 688, 942
Bse118I	RCCGGY	6 cut(s)	417, 439, 646, 673, 822, 844
Bse1I	ACTGG	4 cut(s)	57, 109, 513, 769
Bse3DI	GCAATG	1 cut(s)	730
BseAI	TCCGGA	2 cut(s)	301, 358
BseDI	CCNNGG	1 cut(s)	941
BseGI	GGATG	3 cut(s)	148, 232, 960
BseLI	CCNNNNNNNGG	3 cut(s)	397, 688, 942
BseMI	GCAATG	1 cut(s)	730
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	4 cut(s)	57, 109, 513, 769
BseSI	GKGCMC	1 cut(s)	123
BseYI	CCCAGC	2 cut(s)	69, 288
Bsh1236I	CGCG	1 cut(s)	943
BshFI	GGCC	5 cut(s)	26, 56, 512, 822, 844
BshTI	ACCGGT	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	3 cut(s)	397, 688, 942
BsmAI	GTCTC	2 cut(s)	171, 204
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	720
BsnI	GGCC	5 cut(s)	26, 56, 512, 822, 844
Bsp1286I	GDGCHC	2 cut(s)	123, 936
Bsp13I	TCCGGA	2 cut(s)	301, 358
BspACI	CCGC	7 cut(s)	650, 677, 718, 770, 801, 941, 943
BspANI	GGCC	5 cut(s)	26, 56, 512, 822, 844
BspCNI	CTCAG	1 cut(s)	227
BspEI	TCCGGA	2 cut(s)	301, 358
BspFNI	CGCG	1 cut(s)	943
BspLI	GGNNCC	2 cut(s)	184, 432
BspQI	GCTCTTC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	730
BsrFI	RCCGGY	6 cut(s)	417, 439, 646, 673, 822, 844
BsrI	ACTGG	4 cut(s)	57, 109, 513, 769
BssAI	RCCGGY	6 cut(s)	417, 439, 646, 673, 822, 844
BssECI	CCNNGG	1 cut(s)	941
BssNI	GRCGYC	1 cut(s)	387
Bst4CI	ACNGT	3 cut(s)	549, 711, 893
Bst6I	CTCTTC	4 cut(s)	360, 411, 541, 908
BstACI	GRCGYC	1 cut(s)	387
BstBAI	YACGTR	1 cut(s)	631
BstC8I	GCNNGC	6 cut(s)	514, 626, 799, 824, 846, 932
BstDEI	CTNAG	3 cut(s)	214, 295, 654
BstDSI	CCRYGG	1 cut(s)	941
BstF5I	GGATG	3 cut(s)	148, 232, 960
BstFNI	CGCG	1 cut(s)	943
BstHHI	GCGC	1 cut(s)	45
BstMAI	GTCTC	2 cut(s)	171, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 940
BstNSI	RCATGY	3 cut(s)	77, 628, 801
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	3 cut(s)	516, 612, 831
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	1 cut(s)	943
BstV2I	GAAGAC	1 cut(s)	752
BsuRI	GGCC	5 cut(s)	26, 56, 512, 822, 844
BtgI	CCRYGG	1 cut(s)	941
BtsCI	GGATG	3 cut(s)	148, 232, 960
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	6 cut(s)	514, 626, 799, 824, 846, 932
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	6 cut(s)	417, 439, 646, 673, 822, 844
Cfr13I	GGNCC	7 cut(s)	24, 183, 361, 525, 679, 767, 776
Cfr42I	CCGCGG	1 cut(s)	944
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	417
CviAII	CATG	4 cut(s)	13, 74, 625, 798
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	3 cut(s)	214, 295, 654
EaeI	YGGCCR	3 cut(s)	54, 510, 820
Eam1104I	CTCTTC	4 cut(s)	360, 411, 541, 908
EarI	CTCTTC	4 cut(s)	360, 411, 541, 908
Eco24I	GRGCYC	1 cut(s)	936
Eco47I	GGWCC	6 cut(s)	183, 361, 525, 679, 767, 776
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	170
EcoT22I	ATGCAT	2 cut(s)	626, 799
EcoT38I	GRGCYC	1 cut(s)	936
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	4 cut(s)	16, 77, 628, 801
FaiI	YATR	5 cut(s)	14, 75, 626, 799, 840
FaqI	GGGAC	1 cut(s)	720
FatI	CATG	4 cut(s)	12, 73, 624, 797
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	651, 802
FokI	GGATG	3 cut(s)	155, 239, 967
FriOI	GRGCYC	1 cut(s)	936
Fsp4HI	GCNGC	2 cut(s)	651, 802
FspBI	CTAG	1 cut(s)	489
FspI	TGCGCA	1 cut(s)	44
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	2 cut(s)	651, 802
GsaI	CCCAGC	2 cut(s)	73, 292
HaeIII	GGCC	5 cut(s)	26, 56, 512, 822, 844
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	4 cut(s)	16, 77, 628, 801
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	7 cut(s)	37, 212, 266, 272, 350, 748, 958
HphI	GGTGA	4 cut(s)	537, 653, 881, 881
Hpy166II	GTNNAC	4 cut(s)	66, 346, 644, 877
Hpy188I	TCNGA	6 cut(s)	176, 271, 424, 577, 744, 963
Hpy188III	TCNNGA	3 cut(s)	152, 302, 359
Hpy8I	GTNNAC	4 cut(s)	66, 346, 644, 877
Hpy99I	CGWCG	2 cut(s)	553, 556
HpyAV	CCTTC	4 cut(s)	158, 191, 567, 871
HpyCH4III	ACNGT	3 cut(s)	549, 711, 893
HpyCH4IV	ACGT	3 cut(s)	499, 630, 785
HpyCH4V	TGCA	5 cut(s)	12, 504, 624, 628, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 940
HpyF3I	CTNAG	3 cut(s)	214, 295, 654
HpySE526I	ACGT	3 cut(s)	499, 630, 785
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	4 cut(s)	16, 77, 628, 801
HspAI	GCGC	1 cut(s)	43
Kpn2I	TCCGGA	2 cut(s)	301, 358
KroI	GCCGGC	2 cut(s)	822, 844
KroNI	GCCGGC	2 cut(s)	824, 846
KspI	CCGCGG	1 cut(s)	944
LguI	GCTCTTC	1 cut(s)	411
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	3 cut(s)	499, 630, 785
MaeIII	GTNAC	1 cut(s)	887
MfeI	CAATTG	2 cut(s)	381, 699
MhlI	GDGCHC	2 cut(s)	123, 936
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	7 cut(s)	108, 170, 241, 250, 381, 446, 699
MluNI	TGGCCA	1 cut(s)	512
MlyI	GAGTC	5 cut(s)	46, 206, 260, 266, 742
MmeI	TCCRAC	3 cut(s)	63, 294, 882
Mox20I	TGGCCA	1 cut(s)	512
Mph1103I	ATGCAT	2 cut(s)	626, 799
MroI	TCCGGA	2 cut(s)	301, 358
MroNI	GCCGGC	2 cut(s)	822, 844
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	512
MspA1I	CMGCKG	2 cut(s)	718, 943
MspR9I	CCNGG	3 cut(s)	518, 614, 833
MunI	CAATTG	2 cut(s)	381, 699
MvnI	CGCG	1 cut(s)	943
MwoI	GCNNNNNNNGC	2 cut(s)	410, 940
NaeI	GCCGGC	2 cut(s)	824, 846
NciI	CCSGG	3 cut(s)	518, 614, 833
NgoMIV	GCCGGC	2 cut(s)	822, 844
NlaIII	CATG	4 cut(s)	16, 77, 628, 801
NlaIV	GGNNCC	2 cut(s)	184, 432
NmuCI	GTSAC	1 cut(s)	887
NsbI	TGCGCA	1 cut(s)	44
NsiI	ATGCAT	2 cut(s)	626, 799
NspI	RCATGY	3 cut(s)	77, 628, 801
PaeI	GCATGC	2 cut(s)	628, 801
PciSI	GCTCTTC	1 cut(s)	411
PdiI	GCCGGC	2 cut(s)	824, 846
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	350, 958
PfoI	TCCNGGA	1 cut(s)	831
PinAI	ACCGGT	1 cut(s)	417
PkrI	GCNGC	2 cut(s)	652, 803
PleI	GAGTC	5 cut(s)	45, 206, 260, 266, 742
PpsI	GAGTC	5 cut(s)	45, 206, 260, 266, 742
Ppu21I	YACGTR	1 cut(s)	631
PshAI	GACNNNNGTC	1 cut(s)	276
Psp1406I	AACGTT	2 cut(s)	499, 785
PspFI	CCCAGC	2 cut(s)	69, 288
PspN4I	GGNNCC	2 cut(s)	184, 432
PspPI	GGNCC	7 cut(s)	24, 183, 361, 525, 679, 767, 776
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SacII	CCGCGG	1 cut(s)	944
SalI	GTCGAC	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	2 cut(s)	651, 802
Sau96I	GGNCC	7 cut(s)	24, 183, 361, 525, 679, 767, 776
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	5 cut(s)	46, 206, 260, 266, 742
ScrFI	CCNGG	3 cut(s)	518, 614, 833
SduI	GDGCHC	2 cut(s)	123, 936
Sfr303I	CCGCGG	1 cut(s)	944
SgrBI	CCGCGG	1 cut(s)	944
SinI	GGWCC	6 cut(s)	183, 361, 525, 679, 767, 776
SphI	GCATGC	2 cut(s)	628, 801
Sse9I	AATT	7 cut(s)	108, 170, 241, 250, 381, 446, 699
SsiI	CCGC	7 cut(s)	650, 677, 718, 770, 801, 941, 943
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	3 cut(s)	516, 612, 831
TaaI	ACNGT	3 cut(s)	549, 711, 893
TaiI	ACGT	3 cut(s)	502, 633, 788
TaqI	TCGA	3 cut(s)	35, 65, 881
TaqII	GACCGA	1 cut(s)	244
TasI	AATT	7 cut(s)	108, 170, 241, 250, 381, 446, 699
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	2 cut(s)	653, 804
TfiI	GAWTC	2 cut(s)	350, 958
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	887
Tsp45I	GTSAC	1 cut(s)	887
TspDTI	ATGAA	3 cut(s)	246, 528, 573
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	144
VpaK11BI	GGWCC	6 cut(s)	183, 361, 525, 679, 767, 776
XapI	RAATTY	2 cut(s)	108, 170
XceI	RCATGY	3 cut(s)	77, 628, 801
XmiI	GTMKAC	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	489
ZrmI	AGTACT	1 cut(s)	8
Zsp2I	ATGCAT	2 cut(s)	626, 799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.