Rorug06G0032800

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
4028502 .. 4032147
3646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0032800.1

Sequence Viewer

Length: 1377 bp
ATGGCTGTGAATCAAGCTTCAATCTCGTCTTCTTCCTCCGGCTTGTTCGGCTTCAATTTCAAGTCGCGGACGTCCAGAGCGCAGAGCGTCGCCGTTCCCGCCAAAACCATCGGCGGCTTCTTTAAATGCGTCGCCACTCCTGAGAATTCAGAGTATAAGACTCAGGTGAGTCGCAATGCCAACATGGGGAAGCTTCAAGCTGGTTATCTTTTTCCAGAGATTGCTAGGAGGAGGAATGCGCACTTGGAGAAGTACCCTGATGCGAAAATAATTCCCCTTGGAATTGGTGACACTACCGAGCCCATTCCAGAATATATAACCTCTGTAATTGCAAAGAGAGCACTTGCCATGTCCACCCTAGAGGGTTACAGTGGTTATGGACCTGAACAAGGTGAAAAGCCACTGAGATCTGCACTTGCTAAAACATTTTATGATAACCTTGGCATAGAGGAAGATGATATATTTGTTTCTGATGGTGCAAAATGTGACATATCCCGCCTTCAGATTCTTTTTGGGGAGGATAAAACAATAGCAGTGCAAGATCCATCATATCCGGCTTATGTAGACTCAAGTGTTATTATGGGCCAGACAGGAGAGTATCAGAAATCTGTTGAGAAGTTTGCAAACATTGAGTACATGAGGTGTACTCCTGATAATGGTTTTTTTCCTGATCTGTCCTCTACTAATCGAACAGTTATCATATTTTTCTGTTCACCAAACAATCCTACTGGCTCTGCTGCAACAAGAGAGCAACTGACACAACTTGTAAAGTTTGCCAAGGATAATGGTTCAATCATAGTCTATGATTCTGCATATGCCTTGTATATGTCAGATGATAGTCCACGCTCCATCTTTGAAATCCCTGGAGCTAAAGATGTTGCACTTGAGATATCATCATTTAGCAAGTATGCTGGATTCACTGGAGCTCGTTTGGGGTGGACTGTGATTCCAAAGCAGTTGTGCTATTCGGATGGTTTTCCAGTCGCCAAGGACTTCAACCGCATTGTTTGTACTTGCTTCAATGGTGCATCCACTATTATCCAAGCTGGTGGTCTGGTTTGCCTTGAACCAGAGGGTCTTAAGGCTATGCACGGGGTGATAAATTTCTACAAAGAAAATACTAATATCATAATGGAGACATTTAACTCCCTTGGCCTTAGTGTGTATGGAGGGACGAATGCTCCATATGTGTGGGTCCACTTCCCCGGACAAAGCTCATGGGATGTGTTTGCTGAGATTCTTGAGAAGATTCATGTGGTTACCACACCTGGAAGTGGCTTTGGACCTGGTGGTGAAGGTTTCATCAGGGTTAGTGCCTTTGGTCACAGGGACAATATATTAGAAGCATGTAAGAGATTCAAGCAATTATACAAGTGA

Protein Analysis

458

Amino Acids

50.09

Weight (kDa)

6.06

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 89 - 453 1.1e-35 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010802)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 74
Acc16I TGCGCA 1 cut(s) 240
AccI GTMKAC 1 cut(s) 564
AccII CGCG 1 cut(s) 67
AciI CCGC 5 cut(s) 67, 99, 114, 496, 1000
AclWI GGATC 1 cut(s) 536
AcsI RAATTY 2 cut(s) 145, 1102
AcuI CTGAAG 1 cut(s) 485
AcyI GRCGYC 1 cut(s) 71
AdeI CACNNNGTG 1 cut(s) 1096
AfaI GTAC 4 cut(s) 254, 635, 646, 1012
AfiI CCNNNNNNNGG 4 cut(s) 186, 389, 656, 1274
AflII CTTAAG 1 cut(s) 1079
AjnI CCWGG 3 cut(s) 862, 1267, 1285
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 7 cut(s) 17, 193, 200, 869, 926, 1046, 1215
AluI AGCT 7 cut(s) 17, 193, 200, 869, 926, 1046, 1215
Alw21I GWGCWC 2 cut(s) 343, 928
Alw26I GTCTC 1 cut(s) 1130
AlwI GGATC 1 cut(s) 536
AoxI GGCC 2 cut(s) 583, 1153
ApeKI GCWGC 1 cut(s) 737
ApoI RAATTY 2 cut(s) 145, 1102
AspLEI GCGC 2 cut(s) 82, 241
AspS9I GGNCC 4 cut(s) 380, 583, 1195, 1283
AsuC2I CCSGG 1 cut(s) 1206
AsuHPI GGTGA 6 cut(s) 178, 299, 404, 705, 1108, 1304
AvaII GGWCC 3 cut(s) 380, 1195, 1283
BanII GRGCYC 2 cut(s) 303, 928
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 343, 928
BbvI GCAGC 1 cut(s) 724
BccI CCATC 5 cut(s) 116, 467, 553, 857, 965
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 3 cut(s) 864, 1269, 1287
BcnI CCSGG 1 cut(s) 1206
BcoDI GTCTC 1 cut(s) 1130
BfaI CTAG 2 cut(s) 225, 359
BfrI CTTAAG 1 cut(s) 1079
BglII AGATCT 1 cut(s) 407
BisI GCNGC 2 cut(s) 115, 738
BlsI GCNGC 2 cut(s) 116, 739
Bme1390I CCNGG 4 cut(s) 864, 1206, 1269, 1287
Bme18I GGWCC 3 cut(s) 380, 1195, 1283
BmgT120I GGNCC 4 cut(s) 380, 583, 1195, 1283
BmiI GGNNCC 1 cut(s) 1196
BmrFI CCNGG 4 cut(s) 864, 1206, 1269, 1287
BmsI GCATC 2 cut(s) 250, 1037
BpiI GAAGAC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 631, 663
BpmI CTGGAG 2 cut(s) 885, 942
BpuEI CTTGAG 3 cut(s) 553, 905, 1262
BpuMI CCSGG 1 cut(s) 1206
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 7 cut(s) 277, 439, 777, 862, 987, 1150, 1204
BsaXI ACNNNNNCTCC 2 cut(s) 1165, 1195
Bsc4I CCNNNNNNNGG 4 cut(s) 186, 389, 656, 1274
Bse1I ACTGG 3 cut(s) 733, 925, 980
Bse3DI GCAATG 1 cut(s) 181
BseBI CCWGG 3 cut(s) 864, 1269, 1287
BseDI CCNNGG 7 cut(s) 277, 439, 777, 862, 987, 1150, 1204
BseGI GGATG 3 cut(s) 976, 1028, 1228
BseLI CCNNNNNNNGG 4 cut(s) 186, 389, 656, 1274
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 4 cut(s) 132, 176, 395, 1224
BseNI ACTGG 3 cut(s) 733, 925, 980
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 724
BsgI GTGCAG 1 cut(s) 396
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 585, 1155
BsiHKAI GWGCWC 2 cut(s) 343, 928
BsiSI CCGG 3 cut(s) 39, 554, 1206
BslFI GGGAC 2 cut(s) 1186, 1343
BslI CCNNNNNNNGG 4 cut(s) 186, 389, 656, 1274
BsmAI GTCTC 1 cut(s) 1130
BsmFI GGGAC 2 cut(s) 1186, 1343
BsmI GAATGC 2 cut(s) 241, 1183
BsnI GGCC 2 cut(s) 585, 1155
Bsp1286I GDGCHC 3 cut(s) 303, 343, 928
Bsp143I GATC 3 cut(s) 407, 541, 670
BspACI CCGC 5 cut(s) 67, 99, 114, 496, 1000
BspANI GGCC 2 cut(s) 585, 1155
BspCNI CTCAG 4 cut(s) 133, 175, 396, 1225
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 1196
BspPI GGATC 1 cut(s) 536
BspTI CTTAAG 1 cut(s) 1079
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 3 cut(s) 733, 925, 980
BssECI CCNNGG 7 cut(s) 277, 439, 777, 862, 987, 1150, 1204
BssMI GATC 3 cut(s) 407, 541, 670
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 5 cut(s) 277, 439, 777, 987, 1150
Bst2UI CCWGG 3 cut(s) 864, 1269, 1287
Bst4CI ACNGT 3 cut(s) 371, 694, 943
BstACI GRCGYC 1 cut(s) 71
BstAFI CTTAAG 1 cut(s) 1079
BstDEI CTNAG 5 cut(s) 141, 162, 404, 1157, 1233
BstEII GGTNACC 1 cut(s) 1258
BstENI CCTNNNNNAGG 1 cut(s) 387
BstF5I GGATG 3 cut(s) 976, 1028, 1228
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 2 cut(s) 82, 241
BstKTI GATC 3 cut(s) 410, 544, 673
BstMAI GTCTC 1 cut(s) 1130
BstMBI GATC 3 cut(s) 407, 541, 670
BstMWI GCNNNNNNNGC 3 cut(s) 48, 98, 338
BstNI CCWGG 3 cut(s) 864, 1269, 1287
BstNSI RCATGY 1 cut(s) 1350
BstPI GGTNACC 1 cut(s) 1258
BstSCI CCNGG 4 cut(s) 862, 1204, 1267, 1285
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 724
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 2 cut(s) 407, 541
BstXI CCANNNNNNTGG 2 cut(s) 1049, 1191
BstYI RGATCY 2 cut(s) 407, 541
BsuRI GGCC 2 cut(s) 585, 1155
BtsCI GGATG 3 cut(s) 976, 1028, 1228
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 4 cut(s) 376, 401, 540, 918
CfoI GCGC 2 cut(s) 82, 241
Cfr13I GGNCC 4 cut(s) 380, 583, 1195, 1283
CseI GACGC 2 cut(s) 76, 118
CsiI ACCWGGT 1 cut(s) 1285
Csp6I GTAC 4 cut(s) 253, 634, 645, 1011
CviAII CATG 6 cut(s) 184, 349, 637, 1218, 1253, 1347
CviQI GTAC 4 cut(s) 253, 634, 645, 1011
DdeI CTNAG 5 cut(s) 141, 162, 404, 1157, 1233
DpnI GATC 3 cut(s) 409, 543, 672
DpnII GATC 3 cut(s) 407, 541, 670
DraI TTTAAA 1 cut(s) 124
DraIII CACNNNGTG 1 cut(s) 1096
Ecl136II GAGCTC 1 cut(s) 926
Eco130I CCWWGG 5 cut(s) 277, 439, 777, 987, 1150
Eco24I GRGCYC 2 cut(s) 303, 928
Eco32I GATATC 1 cut(s) 891
Eco47I GGWCC 3 cut(s) 380, 1195, 1283
Eco53kI GAGCTC 1 cut(s) 926
Eco57I CTGAAG 1 cut(s) 485
Eco91I GGTNACC 1 cut(s) 1258
EcoICRI GAGCTC 1 cut(s) 926
EcoNI CCTNNNNNAGG 1 cut(s) 387
EcoO65I GGTNACC 1 cut(s) 1258
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 3 cut(s) 862, 1267, 1285
EcoRV GATATC 1 cut(s) 891
EcoT14I CCWWGG 5 cut(s) 277, 439, 777, 987, 1150
EcoT38I GRGCYC 2 cut(s) 303, 928
ErhI CCWWGG 5 cut(s) 277, 439, 777, 987, 1150
FaeI CATG 6 cut(s) 187, 352, 640, 1221, 1256, 1350
FaqI GGGAC 2 cut(s) 1186, 1343
FatI CATG 6 cut(s) 183, 348, 636, 1217, 1252, 1346
FauI CCCGC 2 cut(s) 106, 503
FauNDI CATATG 2 cut(s) 814, 1186
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 2 cut(s) 115, 738
FokI GGATG 3 cut(s) 983, 1015, 1235
FriOI GRGCYC 2 cut(s) 303, 928
Fsp4HI GCNGC 2 cut(s) 115, 738
FspAI RTGCGCAY 1 cut(s) 240
FspBI CTAG 2 cut(s) 225, 359
FspI TGCGCA 1 cut(s) 240
GlaI GCGC 2 cut(s) 81, 240
GluI GCNGC 2 cut(s) 115, 738
GsuI CTGGAG 2 cut(s) 885, 942
HaeIII GGCC 2 cut(s) 585, 1155
HapII CCGG 3 cut(s) 39, 554, 1206
HgaI GACGC 2 cut(s) 76, 118
HhaI GCGC 2 cut(s) 82, 241
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 6 cut(s) 187, 352, 640, 1221, 1256, 1350
Hin6I GCGC 2 cut(s) 80, 239
HinP1I GCGC 2 cut(s) 80, 239
HindIII AAGCTT 2 cut(s) 15, 191
HpaII CCGG 3 cut(s) 39, 554, 1206
HphI GGTGA 6 cut(s) 178, 299, 404, 705, 1108, 1304
Hpy166II GTNNAC 7 cut(s) 354, 565, 645, 713, 842, 939, 1198
Hpy188I TCNGA 6 cut(s) 151, 472, 504, 603, 832, 970
Hpy188III TCNNGA 7 cut(s) 75, 140, 215, 308, 650, 668, 1241
Hpy8I GTNNAC 7 cut(s) 354, 565, 645, 713, 842, 939, 1198
Hpy99I CGWCG 2 cut(s) 92, 134
HpyAV CCTTC 2 cut(s) 509, 1289
HpyCH4III ACNGT 3 cut(s) 371, 694, 943
HpyCH4IV ACGT 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 98, 338
HpyF3I CTNAG 5 cut(s) 141, 162, 404, 1157, 1233
HpySE526I ACGT 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 6 cut(s) 187, 352, 640, 1221, 1256, 1350
HspAI GCGC 2 cut(s) 80, 239
Kzo9I GATC 3 cut(s) 407, 541, 670
LmnI GCTCC 4 cut(s) 851, 866, 923, 1186
Lsp1109I GCAGC 1 cut(s) 724
LweI GCATC 2 cut(s) 250, 1037
MabI ACCWGGT 1 cut(s) 1285
MaeI CTAG 2 cut(s) 225, 359
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 5 cut(s) 287, 365, 485, 1258, 1322
MalI GATC 3 cut(s) 409, 543, 672
MboI GATC 3 cut(s) 407, 541, 670
MboII GAAGA 4 cut(s) 21, 24, 464, 1258
MflI RGATCY 2 cut(s) 407, 541
MhlI GDGCHC 3 cut(s) 303, 343, 928
MluCI AATT 7 cut(s) 55, 145, 270, 282, 327, 1102, 1364
MlyI GAGTC 3 cut(s) 154, 178, 560
MseI TTAA 3 cut(s) 123, 1080, 1143
MslI CAYNNNNRTG 1 cut(s) 1189
MspCI CTTAAG 1 cut(s) 1079
MspI CCGG 3 cut(s) 39, 554, 1206
MspR9I CCNGG 4 cut(s) 864, 1206, 1269, 1287
Mva1269I GAATGC 2 cut(s) 241, 1183
MvaI CCWGG 3 cut(s) 864, 1269, 1287
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 3 cut(s) 48, 98, 338
NciI CCSGG 1 cut(s) 1206
NdeI CATATG 2 cut(s) 814, 1186
NdeII GATC 3 cut(s) 407, 541, 670
NlaIII CATG 6 cut(s) 187, 352, 640, 1221, 1256, 1350
NlaIV GGNNCC 1 cut(s) 1196
NmuCI GTSAC 3 cut(s) 287, 485, 1322
NsbI TGCGCA 1 cut(s) 240
NspI RCATGY 1 cut(s) 1350
PctI GAATGC 2 cut(s) 241, 1183
PfeI GAWTC 8 cut(s) 10, 505, 806, 915, 946, 1237, 1249, 1356
PkrI GCNGC 2 cut(s) 116, 739
PleI GAGTC 3 cut(s) 154, 177, 560
PpsI GAGTC 3 cut(s) 154, 177, 560
Psp124BI GAGCTC 1 cut(s) 928
Psp6I CCWGG 3 cut(s) 862, 1267, 1285
PspEI GGTNACC 1 cut(s) 1258
PspGI CCWGG 3 cut(s) 862, 1267, 1285
PspN4I GGNNCC 1 cut(s) 1196
PspPI GGNCC 4 cut(s) 380, 583, 1195, 1283
PsuI RGATCY 2 cut(s) 407, 541
RsaI GTAC 4 cut(s) 254, 635, 646, 1012
RsaNI GTAC 4 cut(s) 253, 634, 645, 1011
RseI CAYNNNNRTG 1 cut(s) 1189
SacI GAGCTC 1 cut(s) 928
SaqAI TTAA 3 cut(s) 123, 1080, 1143
SatI GCNGC 2 cut(s) 115, 738
Sau3AI GATC 3 cut(s) 407, 541, 670
Sau96I GGNCC 4 cut(s) 380, 583, 1195, 1283
SchI GAGTC 3 cut(s) 154, 178, 560
ScrFI CCNGG 4 cut(s) 864, 1206, 1269, 1287
SduI GDGCHC 3 cut(s) 303, 343, 928
SexAI ACCWGGT 1 cut(s) 1285
SfaNI GCATC 2 cut(s) 250, 1037
SinI GGWCC 3 cut(s) 380, 1195, 1283
SmiMI CAYNNNNRTG 1 cut(s) 1189
SmlI CTYRAG 4 cut(s) 568, 884, 1079, 1241
SmoI CTYRAG 4 cut(s) 568, 884, 1079, 1241
Sse9I AATT 7 cut(s) 55, 145, 270, 282, 327, 1102, 1364
SsiI CCGC 5 cut(s) 67, 99, 114, 496, 1000
SspMI CTAG 2 cut(s) 225, 359
SstI GAGCTC 1 cut(s) 928
StyD4I CCNGG 4 cut(s) 862, 1204, 1267, 1285
StyI CCWWGG 5 cut(s) 277, 439, 777, 987, 1150
TaaI ACNGT 3 cut(s) 371, 694, 943
TaiI ACGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 688
TasI AATT 7 cut(s) 55, 145, 270, 282, 327, 1102, 1364
TatI WGTACW 3 cut(s) 633, 644, 1010
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 8 cut(s) 10, 505, 806, 915, 946, 1237, 1249, 1356
Tru1I TTAA 3 cut(s) 123, 1080, 1143
Tru9I TTAA 3 cut(s) 123, 1080, 1143
TscAI CASTG 4 cut(s) 376, 408, 540, 925
TseFI GTSAC 3 cut(s) 287, 485, 1322
TseI GCWGC 1 cut(s) 737
Tsp45I GTSAC 3 cut(s) 287, 485, 1322
TspDTI ATGAA 2 cut(s) 1241, 1291
TspRI CASTG 4 cut(s) 376, 408, 540, 925
Vha464I CTTAAG 1 cut(s) 1079
VpaK11BI GGWCC 3 cut(s) 380, 1195, 1283
XagI CCTNNNNNAGG 1 cut(s) 387
XapI RAATTY 2 cut(s) 145, 1102
XceI RCATGY 1 cut(s) 1350
XmiI GTMKAC 1 cut(s) 564
XspI CTAG 2 cut(s) 225, 359
ZraI GACGTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.