RLG00000014002

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
45429573 .. 45432080
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014002

Sequence Viewer

Length: 1125 bp
ATGGCGGCCGGTTTCCTTTGGGTGGGCTTCTCGCTCTGTTTTGAATCATCCCAGCGCCAAATAAGTCCCCATAGCCCCTCGTCATCGTCTCACCAGAAAATGGAGCTGTGCATGGAAGCAAGGGCCTTGAAGTCGAGTTTGCTTACAGAACTGGCCTTAAAGTCGACCCAGCATGCTTTAATGGAGGAGTTTTGGTGTGCTACTGCAATTTCCGGCGTGCCCAGTGAGGATTTCTCAGTGGATGACCTTCTTGACTTCTCTAATGGCGAATTCGAAGATGGGTCCGTTGAAGAAGAACAAGAACTAGAAGAACAGGAAGAAGAAGAAGAAGAAGAAGACAAAGACTCTGTTTCAATGGACTCTGTTGAAAATTCCAATTCCAGCAACTTCACCGAGTCAACTCTGGCCAGCCATCTCGCCGTTCCGGATGATGATTTAGCAGAGCTTGAATGGGTTTCTCACTTTGTGGATGACTCTGTTTCGGAGCTCTCTCTTCTGCACCCAGTTAGCAAGCAAAAACCGGAAGCTTTAAAAGAGAACCGGTCTGAACCGGACGCAAGAAGACTAGCTCAGTCAAGGCTTTCATGGCTTCCCTCGCAGGTCCCGGTCAAAGCCAGAAGCAAACGTTGCAGGCCAGCTGGTCGGTCTCGGTCATTGTGGAACCCACTTGGTGACTCACCGTCTTTAATGCCTTGTTTATCTTCGCCGTCGTCATCGTCTGGTTCTTCAGGGTTTTCATTGTCAACGCCTTGTCTTATATTCACCAACCCGGTTCACAACATGGGGTTGTTTTCAGGAGAACCGGCTGCCAAGAAGCAAAAGAAAAGGCCGGCGGTTCAAACCGGTGATGAGGTTATAGTTGGCAATCAGAGGAAGTGCAGCCATTGCCAAGTTCAGAAGACCCCTCAATGGAGAACCGGTCCACTCGGACCCAAGACGCTGTGTAATGCGTGTGGGGTTCGATACAAGTCGGGCCGGCTGTTTCCAGAGTATAGGCCGGCTTGTAGTCCGACTTTTTCGGGTGATGTTCACTCGAATAGTCATCGAAAAGTTTTGGAGATGAGGAAGAGGAAAGATACCGGTGAGCCGGAACCAGGGATGAGCAAGATGATTCCGGGTTTTTGA

Protein Analysis

375

Amino Acids

41.28

Weight (kDa)

5.35

Isoelectric Point (pI)

68.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 293 - 326 2e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010802)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 589
AccB7I CCANNNNNTGG 1 cut(s) 100
AccI GTMKAC 1 cut(s) 164
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 2 cut(s) 5, 833
AclI AACGTT 1 cut(s) 625
AcoI YGGCCR 2 cut(s) 6, 405
AcsI RAATTY 2 cut(s) 269, 370
AcuI CTGAAG 1 cut(s) 711
AdeI CACNNNGTG 2 cut(s) 466, 671
AfiI CCNNNNNNNGG 4 cut(s) 22, 100, 909, 1094
AgeI ACCGGT 4 cut(s) 540, 842, 917, 1079
AgsI TTSAA 7 cut(s) 44, 130, 290, 354, 368, 449, 839
AhdI GACNNNNNGTC 1 cut(s) 679
AjnI CCWGG 1 cut(s) 1093
AluBI AGCT 6 cut(s) 106, 445, 487, 527, 569, 638
AluI AGCT 6 cut(s) 106, 445, 487, 527, 569, 638
Alw21I GWGCWC 1 cut(s) 489
Alw26I GTCTC 2 cut(s) 93, 651
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 8 cut(s) 6, 123, 153, 405, 632, 827, 973, 995
ApeKI GCWGC 2 cut(s) 806, 879
ApoI RAATTY 2 cut(s) 269, 370
AsiGI ACCGGT 4 cut(s) 540, 842, 917, 1079
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 6 cut(s) 123, 282, 601, 920, 929, 973
AsuC2I CCSGG 3 cut(s) 605, 770, 1116
AsuHPI GGTGA 8 cut(s) 83, 382, 669, 683, 754, 857, 1034, 1094
AsuII TTCGAA 1 cut(s) 273
AvaII GGWCC 4 cut(s) 282, 601, 920, 929
BaeGI GKGCMC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 407
BanII GRGCYC 1 cut(s) 489
BbsI GAAGAC 3 cut(s) 342, 568, 905
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 2 cut(s) 793, 891
BccI CCATC 2 cut(s) 272, 420
BceAI ACGGC 2 cut(s) 404, 691
BciT130I CCWGG 1 cut(s) 1095
BcnI CCSGG 3 cut(s) 605, 770, 1116
BcoDI GTCTC 2 cut(s) 93, 651
BfaI CTAG 2 cut(s) 305, 566
BfoI RGCGCY 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 589
BisI GCNGC 3 cut(s) 6, 807, 880
BlsI GCNGC 3 cut(s) 7, 808, 881
Bme1390I CCNGG 4 cut(s) 605, 770, 1095, 1116
Bme18I GGWCC 4 cut(s) 282, 601, 920, 929
BmeRI GACNNNNNGTC 1 cut(s) 679
BmgT120I GGNCC 6 cut(s) 123, 282, 601, 920, 929, 973
BmiI GGNNCC 5 cut(s) 283, 603, 662, 931, 1092
BmrFI CCNGG 4 cut(s) 605, 770, 1095, 1116
BmrI ACTGGG 2 cut(s) 216, 497
BmuI ACTGGG 2 cut(s) 216, 497
BpiI GAAGAC 3 cut(s) 342, 568, 905
BplI GAGNNNNNCTC 2 cut(s) 218, 250
Bpu14I TTCGAA 1 cut(s) 273
BpuMI CCSGG 3 cut(s) 605, 770, 1116
BsaI GGTCTC 1 cut(s) 651
BsaJI CCNNGG 1 cut(s) 1094
BsaWI WCCGGW 7 cut(s) 424, 520, 540, 550, 842, 917, 1079
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 904, 934
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 100, 909, 1094
Bse118I RCCGGY 9 cut(s) 8, 540, 802, 829, 842, 917, 975, 997, 1079
Bse1I ACTGG 3 cut(s) 156, 222, 503
Bse3DI GCAATG 1 cut(s) 883
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 1 cut(s) 1095
BseDI CCNNGG 1 cut(s) 1094
BseGI GGATG 5 cut(s) 47, 247, 433, 475, 1104
BseLI CCNNNNNNNGG 4 cut(s) 22, 100, 909, 1094
BseMI GCAATG 1 cut(s) 883
BseMII CTCAG 2 cut(s) 249, 584
BseNI ACTGG 3 cut(s) 156, 222, 503
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 222
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 793, 891
BseYI CCCAGC 2 cut(s) 51, 168
BsgI GTGCAG 2 cut(s) 482, 898
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 8 cut(s) 8, 125, 155, 407, 634, 829, 975, 997
BshTI ACCGGT 4 cut(s) 540, 842, 917, 1079
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 489
BslFI GGGAC 2 cut(s) 51, 587
BslI CCNNNNNNNGG 4 cut(s) 22, 100, 909, 1094
BsmAI GTCTC 2 cut(s) 93, 651
BsmBI CGTCTC 1 cut(s) 93
BsmFI GGGAC 2 cut(s) 51, 587
BsnI GGCC 8 cut(s) 8, 125, 155, 407, 634, 829, 975, 997
Bso31I GGTCTC 1 cut(s) 651
Bsp119I TTCGAA 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 222, 489
Bsp13I TCCGGA 1 cut(s) 424
BspACI CCGC 2 cut(s) 5, 833
BspANI GGCC 8 cut(s) 8, 125, 155, 407, 634, 829, 975, 997
BspCNI CTCAG 2 cut(s) 248, 583
BspEI TCCGGA 1 cut(s) 424
BspLI GGNNCC 5 cut(s) 283, 603, 662, 931, 1092
BspMI ACCTGC 1 cut(s) 589
BspT104I TTCGAA 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 651
BsrDI GCAATG 1 cut(s) 883
BsrFI RCCGGY 9 cut(s) 8, 540, 802, 829, 842, 917, 975, 997, 1079
BsrI ACTGG 3 cut(s) 156, 222, 503
BssAI RCCGGY 9 cut(s) 8, 540, 802, 829, 842, 917, 975, 997, 1079
BssECI CCNNGG 1 cut(s) 1094
Bst2UI CCWGG 1 cut(s) 1095
Bst4CI ACNGT 1 cut(s) 681
Bst6I CTCTTC 2 cut(s) 498, 1061
BstAPI GCANNNNNTGC 2 cut(s) 627, 885
BstBI TTCGAA 1 cut(s) 273
BstC8I GCNNGC 9 cut(s) 174, 218, 409, 512, 632, 636, 831, 977, 999
BstDEI CTNAG 2 cut(s) 235, 570
BstF5I GGATG 5 cut(s) 47, 247, 433, 475, 1104
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstMAI GTCTC 2 cut(s) 93, 651
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 586, 595, 627, 885
BstNI CCWGG 1 cut(s) 1095
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 4 cut(s) 603, 768, 1093, 1114
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 793, 891
BstV2I GAAGAC 3 cut(s) 342, 568, 905
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 8 cut(s) 8, 125, 155, 407, 634, 829, 975, 997
BtsCI GGATG 5 cut(s) 47, 247, 433, 475, 1104
BtsIMutI CAGTG 2 cut(s) 229, 243
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 9 cut(s) 174, 218, 409, 512, 632, 636, 831, 977, 999
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 9 cut(s) 8, 540, 802, 829, 842, 917, 975, 997, 1079
Cfr13I GGNCC 6 cut(s) 123, 282, 601, 920, 929, 973
CseI GACGC 2 cut(s) 563, 946
CspAI ACCGGT 4 cut(s) 540, 842, 917, 1079
CviAII CATG 4 cut(s) 112, 173, 585, 781
DdeI CTNAG 2 cut(s) 235, 570
DraI TTTAAA 1 cut(s) 531
DraIII CACNNNGTG 2 cut(s) 466, 671
DriI GACNNNNNGTC 1 cut(s) 679
EaeI YGGCCR 2 cut(s) 6, 405
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 498, 1061
Eam1105I GACNNNNNGTC 1 cut(s) 679
EarI CTCTTC 2 cut(s) 498, 1061
Ecl136II GAGCTC 1 cut(s) 487
EclXI CGGCCG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 651
Eco47I GGWCC 4 cut(s) 282, 601, 920, 929
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 487
EcoO109I RGGNCCY 2 cut(s) 123, 601
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 1093
EcoT38I GRGCYC 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 4 cut(s) 115, 176, 588, 784
FaiI YATR 8 cut(s) 72, 113, 174, 586, 758, 782, 857, 993
FaqI GGGAC 2 cut(s) 51, 587
FatI CATG 4 cut(s) 111, 172, 584, 780
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 6, 807, 880
FokI GGATG 5 cut(s) 34, 254, 440, 482, 1111
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 3 cut(s) 6, 807, 880
FspBI CTAG 2 cut(s) 305, 566
GlaI GCGC 1 cut(s) 56
GluI GCNGC 3 cut(s) 6, 807, 880
GsaI CCCAGC 2 cut(s) 55, 172
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 8 cut(s) 8, 125, 155, 407, 634, 829, 975, 997
HgaI GACGC 2 cut(s) 563, 946
HhaI GCGC 1 cut(s) 57
Hin1II CATG 4 cut(s) 115, 176, 588, 784
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HincII GTYRAC 3 cut(s) 165, 399, 744
HindII GTYRAC 3 cut(s) 165, 399, 744
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 7 cut(s) 44, 344, 359, 395, 473, 674, 1111
HphI GGTGA 8 cut(s) 83, 382, 669, 683, 754, 857, 1034, 1094
Hpy166II GTNNAC 6 cut(s) 165, 399, 744, 775, 923, 1030
Hpy188I TCNGA 6 cut(s) 484, 547, 870, 897, 929, 1011
Hpy188III TCNNGA 4 cut(s) 251, 425, 795, 986
Hpy8I GTNNAC 6 cut(s) 165, 399, 744, 775, 923, 1030
Hpy99I CGWCG 1 cut(s) 712
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 681
HpyCH4IV ACGT 1 cut(s) 625
HpyCH4V TGCA 5 cut(s) 111, 206, 499, 630, 879
HpyF10VI GCNNNNNNNGC 4 cut(s) 586, 595, 627, 885
HpyF3I CTNAG 2 cut(s) 235, 570
HpySE526I ACGT 1 cut(s) 625
Hsp92II CATG 4 cut(s) 115, 176, 588, 784
HspAI GCGC 1 cut(s) 55
Kpn2I TCCGGA 1 cut(s) 424
KroI GCCGGC 3 cut(s) 829, 975, 997
KroNI GCCGGC 3 cut(s) 831, 977, 999
LmnI GCTCC 2 cut(s) 103, 484
Lsp1109I GCAGC 2 cut(s) 793, 891
MaeI CTAG 2 cut(s) 305, 566
MaeII ACGT 1 cut(s) 625
MaeIII GTNAC 1 cut(s) 671
MhlI GDGCHC 2 cut(s) 222, 489
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 4 cut(s) 207, 269, 370, 376
MluNI TGGCCA 1 cut(s) 407
MlyI GAGTC 5 cut(s) 338, 353, 404, 467, 668
MmeI TCCRAC 1 cut(s) 1034
MnlI CCTC 9 cut(s) 88, 178, 220, 604, 844, 864, 915, 1056, 1062
Mox20I TGGCCA 1 cut(s) 407
MroI TCCGGA 1 cut(s) 424
MroNI GCCGGC 3 cut(s) 829, 975, 997
MscI TGGCCA 1 cut(s) 407
MseI TTAA 4 cut(s) 158, 179, 530, 686
Msp20I TGGCCA 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 638
MspR9I CCNGG 4 cut(s) 605, 770, 1095, 1116
MvaI CCWGG 1 cut(s) 1095
MwoI GCNNNNNNNGC 4 cut(s) 586, 595, 627, 885
NaeI GCCGGC 3 cut(s) 831, 977, 999
NciI CCSGG 3 cut(s) 605, 770, 1116
NgoMIV GCCGGC 3 cut(s) 829, 975, 997
NlaIII CATG 4 cut(s) 115, 176, 588, 784
NlaIV GGNNCC 5 cut(s) 283, 603, 662, 931, 1092
NmuCI GTSAC 1 cut(s) 671
NspI RCATGY 1 cut(s) 176
NspV TTCGAA 1 cut(s) 273
PaeI GCATGC 1 cut(s) 176
PdiI GCCGGC 3 cut(s) 831, 977, 999
PfeI GAWTC 2 cut(s) 44, 1111
PflMI CCANNNNNTGG 1 cut(s) 100
PinAI ACCGGT 4 cut(s) 540, 842, 917, 1079
PkrI GCNGC 3 cut(s) 7, 808, 881
PleI GAGTC 5 cut(s) 338, 353, 403, 467, 668
PpsI GAGTC 5 cut(s) 338, 353, 403, 467, 668
PpuMI RGGWCCY 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 489
Psp1406I AACGTT 1 cut(s) 625
Psp5II RGGWCCY 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 1093
PspFI CCCAGC 2 cut(s) 51, 168
PspGI CCWGG 1 cut(s) 1093
PspN4I GGNNCC 5 cut(s) 283, 603, 662, 931, 1092
PspPI GGNCC 6 cut(s) 123, 282, 601, 920, 929, 973
PspPPI RGGWCCY 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 638
SacI GAGCTC 1 cut(s) 489
SalI GTCGAC 1 cut(s) 163
SaqAI TTAA 4 cut(s) 158, 179, 530, 686
SatI GCNGC 3 cut(s) 6, 807, 880
Sau96I GGNCC 6 cut(s) 123, 282, 601, 920, 929, 973
SchI GAGTC 5 cut(s) 338, 353, 404, 467, 668
ScrFI CCNGG 4 cut(s) 605, 770, 1095, 1116
SduI GDGCHC 2 cut(s) 222, 489
SfuI TTCGAA 1 cut(s) 273
SinI GGWCC 4 cut(s) 282, 601, 920, 929
SphI GCATGC 1 cut(s) 176
Sse9I AATT 4 cut(s) 207, 269, 370, 376
SsiI CCGC 2 cut(s) 5, 833
SspMI CTAG 2 cut(s) 305, 566
SstI GAGCTC 1 cut(s) 489
StyD4I CCNGG 4 cut(s) 603, 768, 1093, 1114
TaaI ACNGT 1 cut(s) 681
TaiI ACGT 1 cut(s) 628
TaqI TCGA 6 cut(s) 134, 164, 273, 961, 1034, 1045
TaqII GACCGA 2 cut(s) 633, 639
TasI AATT 4 cut(s) 207, 269, 370, 376
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 44, 1111
Tru1I TTAA 4 cut(s) 158, 179, 530, 686
Tru9I TTAA 4 cut(s) 158, 179, 530, 686
TscAI CASTG 2 cut(s) 229, 243
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 2 cut(s) 806, 879
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 2 cut(s) 573, 726
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 2 cut(s) 229, 243
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 4 cut(s) 282, 601, 920, 929
XapI RAATTY 2 cut(s) 269, 370
XceI RCATGY 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 2 cut(s) 305, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.