Rmu_sc0007301.1_g000001

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007301.1
Physical Location & Seq
Forward (+)
6160 .. 9567
3408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007301.1_g000001.1.cds

Sequence Viewer

Length: 1449 bp
atgaatggagcctttgatttctcctccaaatccggtggagtaggagtggttcttcgtgatgctatgagggatattattggtggaatttgtttaaaggtcaactttgttgcctctccagatattgttgaggccatggcttgtagggctgcttgttccctggcagtacagtgtcatctttctcctattatggttgagatagattatcagagtatagtttctactattgaggctgagggggaggagacttcatccttgggtcgtattattgaggacatcaacttttctcttgggatgttgatggagtcgactctagacgaagagatagatagaaaggcagcaccagaagatagaatactacctttcatcttcctcgcaccttttcctcttctttcttcatcatcagcgtcatcgtctcaccaggaaatggagccgtgcatggaagcaagggccttgaagtcgagtttgcttacagaactggccttaaagtcgacccagcatggtttaatggaggagttttggagtgttactgcaatttccggcgtgcccagtgaggatttctcagtggatgaccttcttgacttctctaatggcgaattcgaagatgggtccgttgaagaagaacaagaactagaagaacaggaggaagaagaagaagaagaagacaaagactctgtttcaatggactctgttgaaaattccaattccagcaacttcaccgagtcaactctggccagccatctcgccgttccggatgatgatttagcagagcttgaatgggtttctcactttgtggacgactctgtttcggagctctctcttttgtacccagttagcaagcaaaaaccggaagctttaaaagagaaccggtctgaaccggaggcaagaaaactagctcagtcaaggctttcatggcttccctcgcaggtcccggtcaaagccagaagcaaacgttgcagaccagcccgttggtgtcggtcattgtggaacccacttggtgactcaccgtctttaacgccttgtttatcttcgccgtcgtcatcgtcttgttcttcagggttttcattgtcaacgccttgtcttatattcactagcccggttcacaacatggggttgttttcaggggaaccggctgccaagaagcaaaagagaaagccggcggttcaaaccggtgatgaggttatagttgggattcagaggaagtgcagccattgccaagttcagaagacccctcagtggagaaccggtccactcggacccaagacgctgtgtaatgcgtgtggggttcgatacaagtccggccggctgtttccggagtatagaccggcttgtagtccgaccttttcgggtgatgttcactcgaatagtcatcgaaaagttttggagatgaggaagaggaaagataccggtgagccggaaccagggatgagcaagatgattccgggtttttga

Protein Analysis

482

Amino Acids

52.92

Weight (kDa)

4.84

Isoelectric Point (pI)

64.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010802)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 913
AccB7I CCANNNNNTGG 1 cut(s) 424
AccI GTMKAC 2 cut(s) 305, 488
AccIII TCCGGA 2 cut(s) 748, 1309
AciI CCGC 1 cut(s) 1157
AclI AACGTT 1 cut(s) 949
AcoI YGGCCR 2 cut(s) 729, 1297
AcsI RAATTY 3 cut(s) 84, 593, 694
AcuI CTGAAG 1 cut(s) 1035
AdeI CACNNNGTG 2 cut(s) 790, 995
AfaI GTAC 2 cut(s) 165, 824
AfiI CCNNNNNNNGG 3 cut(s) 424, 1233, 1418
AgeI ACCGGT 4 cut(s) 864, 1166, 1241, 1403
AgsI TTSAA 6 cut(s) 454, 614, 678, 692, 773, 1163
AhdI GACNNNNNGTC 1 cut(s) 1003
AjnI CCWGG 3 cut(s) 156, 417, 1417
AluBI AGCT 4 cut(s) 769, 811, 851, 893
AluI AGCT 4 cut(s) 769, 811, 851, 893
Alw21I GWGCWC 1 cut(s) 813
Alw26I GTCTC 2 cut(s) 236, 417
Aor13HI TCCGGA 2 cut(s) 748, 1309
AoxI GGCC 5 cut(s) 129, 447, 477, 729, 1297
ApeKI GCWGC 4 cut(s) 146, 335, 1130, 1203
ApoI RAATTY 3 cut(s) 84, 593, 694
AsiGI ACCGGT 4 cut(s) 864, 1166, 1241, 1403
AspS9I GGNCC 5 cut(s) 447, 606, 925, 1244, 1253
AsuC2I CCSGG 3 cut(s) 929, 1094, 1440
AsuHPI GGTGA 7 cut(s) 407, 706, 993, 1007, 1181, 1358, 1418
AsuII TTCGAA 1 cut(s) 597
AvaII GGWCC 4 cut(s) 606, 925, 1244, 1253
BaeGI GKGCMC 1 cut(s) 546
BalI TGGCCA 1 cut(s) 731
BanII GRGCYC 1 cut(s) 813
BarI GAAGNNNNNNTAC 2 cut(s) 336, 368
BbsI GAAGAC 2 cut(s) 666, 1229
Bbv12I GWGCWC 1 cut(s) 813
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 133, 347, 1117, 1215
BccI CCATC 3 cut(s) 292, 596, 744
BceAI ACGGC 3 cut(s) 415, 728, 1015
BciT130I CCWGG 3 cut(s) 158, 419, 1419
BcnI CCSGG 3 cut(s) 929, 1094, 1440
BcoDI GTCTC 2 cut(s) 236, 417
BfaI CTAG 4 cut(s) 311, 629, 890, 1089
BfuAI ACCTGC 1 cut(s) 913
BisI GCNGC 4 cut(s) 147, 336, 1131, 1204
BlsI GCNGC 4 cut(s) 148, 337, 1132, 1205
Bme1390I CCNGG 6 cut(s) 158, 419, 929, 1094, 1419, 1440
Bme18I GGWCC 4 cut(s) 606, 925, 1244, 1253
BmeRI GACNNNNNGTC 1 cut(s) 1003
BmgT120I GGNCC 5 cut(s) 447, 606, 925, 1244, 1253
BmiI GGNNCC 8 cut(s) 10, 429, 607, 927, 986, 1125, 1255, 1416
BmrFI CCNGG 6 cut(s) 158, 419, 929, 1094, 1419, 1440
BmrI ACTGGG 2 cut(s) 540, 821
BmsI GCATC 1 cut(s) 49
BmuI ACTGGG 2 cut(s) 540, 821
BpiI GAAGAC 2 cut(s) 666, 1229
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 597
BpuMI CCSGG 3 cut(s) 929, 1094, 1440
BsaJI CCNNGG 4 cut(s) 132, 156, 252, 1418
BsaWI WCCGGW 9 cut(s) 32, 748, 844, 864, 874, 1166, 1241, 1309, 1403
BsaXI ACNNNNNCTCC 4 cut(s) 30, 60, 1228, 1258
Bsc4I CCNNNNNNNGG 3 cut(s) 424, 1233, 1418
Bse118I RCCGGY 8 cut(s) 864, 1126, 1153, 1166, 1241, 1299, 1321, 1403
Bse1I ACTGG 3 cut(s) 480, 546, 827
Bse3DI GCAATG 1 cut(s) 1207
BseAI TCCGGA 2 cut(s) 748, 1309
BseBI CCWGG 3 cut(s) 158, 419, 1419
BseDI CCNNGG 4 cut(s) 132, 156, 252, 1418
BseGI GGATG 5 cut(s) 248, 297, 571, 757, 1428
BseLI CCNNNNNNNGG 3 cut(s) 424, 1233, 1418
BseMI GCAATG 1 cut(s) 1207
BseMII CTCAG 4 cut(s) 222, 573, 908, 1244
BseNI ACTGG 3 cut(s) 480, 546, 827
BseRI GAGGAG 3 cut(s) 13, 254, 524
BseSI GKGCMC 1 cut(s) 546
BseX3I CGGCCG 1 cut(s) 1297
BseXI GCAGC 4 cut(s) 133, 347, 1117, 1215
BseYI CCCAGC 1 cut(s) 492
BsgI GTGCAG 1 cut(s) 1222
Bsh1285I CGRYCG 1 cut(s) 1300
BshFI GGCC 5 cut(s) 131, 449, 479, 731, 1299
BshTI ACCGGT 4 cut(s) 864, 1166, 1241, 1403
BsiEI CGRYCG 1 cut(s) 1300
BsiHKAI GWGCWC 1 cut(s) 813
BslFI GGGAC 1 cut(s) 911
BslI CCNNNNNNNGG 3 cut(s) 424, 1233, 1418
BsmAI GTCTC 2 cut(s) 236, 417
BsmBI CGTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 911
BsnI GGCC 5 cut(s) 131, 449, 479, 731, 1299
Bsp119I TTCGAA 1 cut(s) 597
Bsp1286I GDGCHC 2 cut(s) 546, 813
Bsp13I TCCGGA 2 cut(s) 748, 1309
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 1 cut(s) 1157
BspANI GGCC 5 cut(s) 131, 449, 479, 731, 1299
BspCNI CTCAG 4 cut(s) 223, 572, 907, 1243
BspEI TCCGGA 2 cut(s) 748, 1309
BspLI GGNNCC 8 cut(s) 10, 429, 607, 927, 986, 1125, 1255, 1416
BspMI ACCTGC 1 cut(s) 913
BspT104I TTCGAA 1 cut(s) 597
BsrDI GCAATG 1 cut(s) 1207
BsrFI RCCGGY 8 cut(s) 864, 1126, 1153, 1166, 1241, 1299, 1321, 1403
BsrI ACTGG 3 cut(s) 480, 546, 827
BssAI RCCGGY 8 cut(s) 864, 1126, 1153, 1166, 1241, 1299, 1321, 1403
BssECI CCNNGG 4 cut(s) 132, 156, 252, 1418
BssT1I CCWWGG 2 cut(s) 132, 252
Bst2UI CCWGG 3 cut(s) 158, 419, 1419
Bst4CI ACNGT 2 cut(s) 168, 1005
Bst6I CTCTTC 3 cut(s) 312, 390, 1385
BstAPI GCANNNNNTGC 2 cut(s) 951, 1209
BstBI TTCGAA 1 cut(s) 597
BstC8I GCNNGC 5 cut(s) 542, 733, 836, 1155, 1301
BstDEI CTNAG 4 cut(s) 231, 559, 894, 1230
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 5 cut(s) 248, 297, 571, 757, 1428
BstMAI GTCTC 2 cut(s) 236, 417
BstMCI CGRYCG 1 cut(s) 1300
BstMWI GCNNNNNNNGC 5 cut(s) 143, 910, 919, 951, 1209
BstNI CCWGG 3 cut(s) 158, 419, 1419
BstSCI CCNGG 6 cut(s) 156, 417, 927, 1092, 1417, 1438
BstSLI GKGCMC 1 cut(s) 546
BstV1I GCAGC 4 cut(s) 133, 347, 1117, 1215
BstV2I GAAGAC 2 cut(s) 666, 1229
BstXI CCANNNNNNTGG 1 cut(s) 966
BstZI CGGCCG 1 cut(s) 1297
BsuRI GGCC 5 cut(s) 131, 449, 479, 731, 1299
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 5 cut(s) 248, 297, 571, 757, 1428
BtsIMutI CAGTG 4 cut(s) 173, 553, 567, 1238
BveI ACCTGC 1 cut(s) 913
Cac8I GCNNGC 5 cut(s) 542, 733, 836, 1155, 1301
Cfr10I RCCGGY 8 cut(s) 864, 1126, 1153, 1166, 1241, 1299, 1321, 1403
Cfr13I GGNCC 5 cut(s) 447, 606, 925, 1244, 1253
CseI GACGC 2 cut(s) 393, 1270
Csp6I GTAC 2 cut(s) 164, 823
CspAI ACCGGT 4 cut(s) 864, 1166, 1241, 1403
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 5 cut(s) 133, 436, 497, 909, 1105
CviQI GTAC 2 cut(s) 164, 823
DdeI CTNAG 4 cut(s) 231, 559, 894, 1230
DraI TTTAAA 2 cut(s) 93, 855
DraIII CACNNNGTG 2 cut(s) 790, 995
DriI GACNNNNNGTC 1 cut(s) 1003
EaeI YGGCCR 2 cut(s) 729, 1297
EagI CGGCCG 1 cut(s) 1297
Eam1104I CTCTTC 3 cut(s) 312, 390, 1385
Eam1105I GACNNNNNGTC 1 cut(s) 1003
EarI CTCTTC 3 cut(s) 312, 390, 1385
Ecl136II GAGCTC 1 cut(s) 811
EclXI CGGCCG 1 cut(s) 1297
Eco130I CCWWGG 2 cut(s) 132, 252
Eco24I GRGCYC 1 cut(s) 813
Eco47I GGWCC 4 cut(s) 606, 925, 1244, 1253
Eco52I CGGCCG 1 cut(s) 1297
Eco53kI GAGCTC 1 cut(s) 811
Eco57I CTGAAG 1 cut(s) 1035
EcoICRI GAGCTC 1 cut(s) 811
EcoO109I RGGNCCY 2 cut(s) 447, 925
EcoRI GAATTC 1 cut(s) 593
EcoRII CCWGG 3 cut(s) 156, 417, 1417
EcoT14I CCWWGG 2 cut(s) 132, 252
EcoT38I GRGCYC 1 cut(s) 813
ErhI CCWWGG 2 cut(s) 132, 252
Esp3I CGTCTC 1 cut(s) 417
FaeI CATG 5 cut(s) 136, 439, 500, 912, 1108
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FaqI GGGAC 1 cut(s) 911
FatI CATG 5 cut(s) 132, 435, 496, 908, 1104
FblI GTMKAC 2 cut(s) 305, 488
Fnu4HI GCNGC 4 cut(s) 147, 336, 1131, 1204
FokI GGATG 5 cut(s) 235, 304, 578, 764, 1435
FriOI GRGCYC 1 cut(s) 813
Fsp4HI GCNGC 4 cut(s) 147, 336, 1131, 1204
FspBI CTAG 4 cut(s) 311, 629, 890, 1089
GluI GCNGC 4 cut(s) 147, 336, 1131, 1204
GsaI CCCAGC 1 cut(s) 496
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 5 cut(s) 131, 449, 479, 731, 1299
HgaI GACGC 2 cut(s) 393, 1270
Hin1II CATG 5 cut(s) 136, 439, 500, 912, 1108
HincII GTYRAC 5 cut(s) 100, 306, 489, 723, 1068
HindII GTYRAC 5 cut(s) 100, 306, 489, 723, 1068
HindIII AAGCTT 1 cut(s) 849
HinfI GANTC 9 cut(s) 302, 307, 668, 683, 719, 797, 998, 1189, 1435
HphI GGTGA 7 cut(s) 407, 706, 993, 1007, 1181, 1358, 1418
Hpy166II GTNNAC 9 cut(s) 100, 306, 489, 723, 793, 1068, 1099, 1247, 1354
Hpy188I TCNGA 7 cut(s) 207, 808, 871, 1194, 1221, 1253, 1335
Hpy188III TCNNGA 6 cut(s) 56, 116, 311, 575, 749, 1310
Hpy8I GTNNAC 9 cut(s) 100, 306, 489, 723, 793, 1068, 1099, 1247, 1354
Hpy99I CGWCG 1 cut(s) 1036
HpyAV CCTTC 1 cut(s) 581
HpyCH4III ACNGT 2 cut(s) 168, 1005
HpyCH4IV ACGT 1 cut(s) 949
HpyCH4V TGCA 4 cut(s) 435, 530, 954, 1203
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 910, 919, 951, 1209
HpyF3I CTNAG 4 cut(s) 231, 559, 894, 1230
HpySE526I ACGT 1 cut(s) 949
Hsp92II CATG 5 cut(s) 136, 439, 500, 912, 1108
Kpn2I TCCGGA 2 cut(s) 748, 1309
KroI GCCGGC 2 cut(s) 1153, 1299
KroNI GCCGGC 2 cut(s) 1155, 1301
LmnI GCTCC 3 cut(s) 8, 427, 808
Lsp1109I GCAGC 4 cut(s) 133, 347, 1117, 1215
LweI GCATC 1 cut(s) 49
MaeI CTAG 4 cut(s) 311, 629, 890, 1089
MaeII ACGT 1 cut(s) 949
MaeIII GTNAC 2 cut(s) 523, 995
MhlI GDGCHC 2 cut(s) 546, 813
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 5 cut(s) 84, 531, 593, 694, 700
MluNI TGGCCA 1 cut(s) 731
MlyI GAGTC 7 cut(s) 301, 311, 662, 677, 728, 791, 992
MmeI TCCRAC 1 cut(s) 1358
Mox20I TGGCCA 1 cut(s) 731
MroI TCCGGA 2 cut(s) 748, 1309
MroNI GCCGGC 2 cut(s) 1153, 1299
MscI TGGCCA 1 cut(s) 731
MseI TTAA 5 cut(s) 92, 482, 503, 854, 1010
Msp20I TGGCCA 1 cut(s) 731
MspR9I CCNGG 6 cut(s) 158, 419, 929, 1094, 1419, 1440
MvaI CCWGG 3 cut(s) 158, 419, 1419
MwoI GCNNNNNNNGC 5 cut(s) 143, 910, 919, 951, 1209
NaeI GCCGGC 2 cut(s) 1155, 1301
NciI CCSGG 3 cut(s) 929, 1094, 1440
NcoI CCATGG 1 cut(s) 132
NgoMIV GCCGGC 2 cut(s) 1153, 1299
NlaIII CATG 5 cut(s) 136, 439, 500, 912, 1108
NlaIV GGNNCC 8 cut(s) 10, 429, 607, 927, 986, 1125, 1255, 1416
NmuCI GTSAC 1 cut(s) 995
NspV TTCGAA 1 cut(s) 597
PdiI GCCGGC 2 cut(s) 1155, 1301
PfeI GAWTC 2 cut(s) 1189, 1435
PflMI CCANNNNNTGG 1 cut(s) 424
PinAI ACCGGT 4 cut(s) 864, 1166, 1241, 1403
PkrI GCNGC 4 cut(s) 148, 337, 1132, 1205
PleI GAGTC 7 cut(s) 301, 310, 662, 677, 727, 791, 992
PpsI GAGTC 7 cut(s) 301, 310, 662, 677, 727, 791, 992
PpuMI RGGWCCY 1 cut(s) 925
Psp124BI GAGCTC 1 cut(s) 813
Psp1406I AACGTT 1 cut(s) 949
Psp5II RGGWCCY 1 cut(s) 925
Psp6I CCWGG 3 cut(s) 156, 417, 1417
PspFI CCCAGC 1 cut(s) 492
PspGI CCWGG 3 cut(s) 156, 417, 1417
PspN4I GGNNCC 8 cut(s) 10, 429, 607, 927, 986, 1125, 1255, 1416
PspPI GGNCC 5 cut(s) 447, 606, 925, 1244, 1253
PspPPI RGGWCCY 1 cut(s) 925
PsrI GAACNNNNNNTAC 2 cut(s) 33, 65
RsaI GTAC 2 cut(s) 165, 824
RsaNI GTAC 2 cut(s) 164, 823
SacI GAGCTC 1 cut(s) 813
SalI GTCGAC 2 cut(s) 304, 487
SaqAI TTAA 5 cut(s) 92, 482, 503, 854, 1010
SatI GCNGC 4 cut(s) 147, 336, 1131, 1204
Sau96I GGNCC 5 cut(s) 447, 606, 925, 1244, 1253
SchI GAGTC 7 cut(s) 301, 311, 662, 677, 728, 791, 992
ScrFI CCNGG 6 cut(s) 158, 419, 929, 1094, 1419, 1440
SduI GDGCHC 2 cut(s) 546, 813
SfaNI GCATC 1 cut(s) 49
SfuI TTCGAA 1 cut(s) 597
SinI GGWCC 4 cut(s) 606, 925, 1244, 1253
Sse9I AATT 5 cut(s) 84, 531, 593, 694, 700
SsiI CCGC 1 cut(s) 1157
SspMI CTAG 4 cut(s) 311, 629, 890, 1089
SstI GAGCTC 1 cut(s) 813
StyD4I CCNGG 6 cut(s) 156, 417, 927, 1092, 1417, 1438
StyI CCWWGG 2 cut(s) 132, 252
TaaI ACNGT 2 cut(s) 168, 1005
TaiI ACGT 1 cut(s) 952
TaqI TCGA 7 cut(s) 305, 458, 488, 597, 1285, 1358, 1369
TaqII GACCGA 1 cut(s) 963
TasI AATT 5 cut(s) 84, 531, 593, 694, 700
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 2 cut(s) 1189, 1435
Tru1I TTAA 5 cut(s) 92, 482, 503, 854, 1010
Tru9I TTAA 5 cut(s) 92, 482, 503, 854, 1010
TscAI CASTG 4 cut(s) 173, 553, 567, 1238
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 4 cut(s) 146, 335, 1130, 1203
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 6 cut(s) 17, 237, 352, 384, 897, 1050
TspGWI ACGGA 1 cut(s) 598
TspRI CASTG 4 cut(s) 173, 553, 567, 1238
Van91I CCANNNNNTGG 1 cut(s) 424
VpaK11BI GGWCC 4 cut(s) 606, 925, 1244, 1253
XapI RAATTY 3 cut(s) 84, 593, 694
XbaI TCTAGA 1 cut(s) 310
XmiI GTMKAC 2 cut(s) 305, 488
XspI CTAG 4 cut(s) 311, 629, 890, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.