Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010802

Physical Location & Seq

Genomic Coordinates Forward (+)

24423204 .. 24425793

Gene Structure 2590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGCACCCTCGCATTTTCCCGTGCATGGAAGCAAGGGCCTTGAAGTCGAGTTTGCTTACAGAACTGGCCTTAAAGTCGACCCAGCATGGTTTAATGGAGGAGTTTTGGAGTGTTACTGCAATTTCCGGCGTGCCCAGTGAGGATTTCTCAGTGGATGACCTTCTTGACTTCTCTAATGGCGAATTCGAAGATGGGTCCGTTGAAGAAGAACAAGAACTAGAAGAGCAGGAGGAAGAAGAAGAAGAAGAAGACAAAGACTCTGTTTCAATGGACTCTGTTGAAAATTCCAATTCCAGCAACTTCACCGAGTCAACTCTGGCCAGCCATCTCGCCGTTCCGGATGATGATTTAGCAGAGCTTGAATGGGTTTCTCACTTTGTGGACGACTCTGTTTCGGAGCTCTCTCTTCTGTACCCAGTTAGCAAGCAAAAACCGGAAGCTTTAAAAGAGAACCGGTCTGAACCGGAGGCAAGAAAACTAGCTCAGTCAAGGCTTTCATGGCTTCCCTCGCAGGTCCCGGTCAAAGCCAGAAGCAAACGTTGCAGACCAGCTCGTTGGTGTCGGTCATTGTGGAACCCACTTGGTGACTCACCGTCTTTAACGCCTTGTTTATCTTCGCCGTCGTCATCGTCTTGTTCTTCAGGGTTTTCATTGTCAACGCCTTGTCTTATATTCACCAGCCCGGTTCACAACATGGGGTTGTTTTCAGGGGAACCGGCTGCCAAGAAGCAAAAGAGAAAGCCGGCGGTTCAAACCGGTGATGAGGTTATAGTTGGGATTCAGAGGAAGTGCAGCCATTGCCAAGTTCAGAAGACCCCTCAGTGGAGAACCGGTCCACTCGGACCCAAGACGCTGTGTAATGCGTGTGGGGTTCGATACAAGTCCGGCCGGCTGTTTCCGGAGTATAGACCGGCTTGTAGTCCGACCTTTTCGGGTGATGTTCACTCGAATAGTCATCGAAAAGTTTTGGAGATGAGGAAGAGGAAAGATACCGGTGAGCCGGAACCAGGGATGAGCAAGATGATTCCGGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

345

Amino Acids

38.33

Weight (kDa)

5.29

Isoelectric Point (pI)

66.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	264 - 297	1.8e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36240
fragaria_vesca	FvH4_2g10220 FvH4_2g10220 FvH4_2g10220
malus_domestica	MD05G1055800.v1.1 MD10G1064300.v1.1
prunus_persica	Prupe.8G086100_v2.0.a1
pyrus_communis	pycom05g04720 pycom10g05020
rosa_chinensis	RchiOBHm_Chr6g0267451
rosa_laevigata	RLG00000014002
rosa_multiflora	Rmu_co8362579.1_g000001 Rmu_sc0007301.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200760
rosa_rugosa	Rorug06G0032800
rosa_samantha	Rh6AG154100 Rh6BG154400 Rh6CG149900 Rh6DG139600
rosa_wichuraiana	Rw6G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	502
AccI	GTMKAC	1 cut(s)	77
AccIII	TCCGGA	2 cut(s)	337, 898
AciI	CCGC	1 cut(s)	746
AclI	AACGTT	1 cut(s)	538
AcoI	YGGCCR	2 cut(s)	318, 886
AcsI	RAATTY	2 cut(s)	182, 283
AcuI	CTGAAG	1 cut(s)	624
AdeI	CACNNNGTG	2 cut(s)	379, 584
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	3 cut(s)	25, 822, 1007
AgeI	ACCGGT	4 cut(s)	453, 755, 830, 992
AgsI	TTSAA	6 cut(s)	43, 203, 267, 281, 362, 752
AhdI	GACNNNNNGTC	1 cut(s)	592
AjnI	CCWGG	1 cut(s)	1006
AluBI	AGCT	5 cut(s)	358, 400, 440, 482, 551
AluI	AGCT	5 cut(s)	358, 400, 440, 482, 551
Alw21I	GWGCWC	1 cut(s)	402
Aor13HI	TCCGGA	2 cut(s)	337, 898
AoxI	GGCC	4 cut(s)	36, 66, 318, 886
ApeKI	GCWGC	2 cut(s)	719, 792
ApoI	RAATTY	2 cut(s)	182, 283
AsiGI	ACCGGT	4 cut(s)	453, 755, 830, 992
AspS9I	GGNCC	5 cut(s)	36, 195, 514, 833, 842
AsuC2I	CCSGG	3 cut(s)	518, 683, 1029
AsuHPI	GGTGA	7 cut(s)	295, 582, 596, 667, 770, 947, 1007
AsuII	TTCGAA	1 cut(s)	186
AvaII	GGWCC	4 cut(s)	195, 514, 833, 842
BaeGI	GKGCMC	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	402
BbsI	GAAGAC	2 cut(s)	255, 818
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	706, 804
BccI	CCATC	2 cut(s)	185, 333
BceAI	ACGGC	2 cut(s)	317, 604
BciT130I	CCWGG	1 cut(s)	1008
BcnI	CCSGG	3 cut(s)	518, 683, 1029
BfaI	CTAG	2 cut(s)	218, 479
BfuAI	ACCTGC	1 cut(s)	502
BisI	GCNGC	2 cut(s)	720, 793
BlsI	GCNGC	2 cut(s)	721, 794
Bme1390I	CCNGG	4 cut(s)	518, 683, 1008, 1029
Bme18I	GGWCC	4 cut(s)	195, 514, 833, 842
BmeRI	GACNNNNNGTC	1 cut(s)	592
BmgT120I	GGNCC	5 cut(s)	36, 195, 514, 833, 842
BmiI	GGNNCC	6 cut(s)	196, 516, 575, 714, 844, 1005
BmrFI	CCNGG	4 cut(s)	518, 683, 1008, 1029
BmrI	ACTGGG	2 cut(s)	129, 410
BmuI	ACTGGG	2 cut(s)	129, 410
BpiI	GAAGAC	2 cut(s)	255, 818
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
Bpu14I	TTCGAA	1 cut(s)	186
BpuMI	CCSGG	3 cut(s)	518, 683, 1029
BsaJI	CCNNGG	1 cut(s)	1007
BsaWI	WCCGGW	8 cut(s)	337, 433, 453, 463, 755, 830, 898, 992
BsaXI	ACNNNNNCTCC	2 cut(s)	817, 847
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 822, 1007
Bse118I	RCCGGY	8 cut(s)	453, 715, 742, 755, 830, 888, 910, 992
Bse1I	ACTGG	3 cut(s)	69, 135, 416
Bse3DI	GCAATG	1 cut(s)	796
BseAI	TCCGGA	2 cut(s)	337, 898
BseBI	CCWGG	1 cut(s)	1008
BseDI	CCNNGG	1 cut(s)	1007
BseGI	GGATG	3 cut(s)	160, 346, 1017
BseLI	CCNNNNNNNGG	3 cut(s)	25, 822, 1007
BseMI	GCAATG	1 cut(s)	796
BseMII	CTCAG	3 cut(s)	162, 497, 833
BseNI	ACTGG	3 cut(s)	69, 135, 416
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	135
BseX3I	CGGCCG	1 cut(s)	886
BseXI	GCAGC	2 cut(s)	706, 804
BseYI	CCCAGC	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	811
Bsh1285I	CGRYCG	1 cut(s)	889
BshFI	GGCC	4 cut(s)	38, 68, 320, 888
BshTI	ACCGGT	4 cut(s)	453, 755, 830, 992
BsiEI	CGRYCG	1 cut(s)	889
BsiHKAI	GWGCWC	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	3 cut(s)	25, 822, 1007
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	4 cut(s)	38, 68, 320, 888
Bsp119I	TTCGAA	1 cut(s)	186
Bsp1286I	GDGCHC	2 cut(s)	135, 402
Bsp13I	TCCGGA	2 cut(s)	337, 898
BspACI	CCGC	1 cut(s)	746
BspANI	GGCC	4 cut(s)	38, 68, 320, 888
BspCNI	CTCAG	3 cut(s)	161, 496, 832
BspEI	TCCGGA	2 cut(s)	337, 898
BspLI	GGNNCC	6 cut(s)	196, 516, 575, 714, 844, 1005
BspMI	ACCTGC	1 cut(s)	502
BspQI	GCTCTTC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	796
BsrFI	RCCGGY	8 cut(s)	453, 715, 742, 755, 830, 888, 910, 992
BsrI	ACTGG	3 cut(s)	69, 135, 416
BssAI	RCCGGY	8 cut(s)	453, 715, 742, 755, 830, 888, 910, 992
BssECI	CCNNGG	1 cut(s)	1007
Bst2UI	CCWGG	1 cut(s)	1008
Bst4CI	ACNGT	1 cut(s)	594
Bst6I	CTCTTC	3 cut(s)	216, 411, 974
BstAPI	GCANNNNNTGC	2 cut(s)	540, 798
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	5 cut(s)	131, 322, 425, 744, 890
BstDEI	CTNAG	3 cut(s)	148, 483, 819
BstF5I	GGATG	3 cut(s)	160, 346, 1017
BstMCI	CGRYCG	1 cut(s)	889
BstMWI	GCNNNNNNNGC	4 cut(s)	499, 508, 540, 798
BstNI	CCWGG	1 cut(s)	1008
BstSCI	CCNGG	4 cut(s)	516, 681, 1006, 1027
BstSLI	GKGCMC	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	706, 804
BstV2I	GAAGAC	2 cut(s)	255, 818
BstXI	CCANNNNNNTGG	1 cut(s)	555
BstZI	CGGCCG	1 cut(s)	886
BsuRI	GGCC	4 cut(s)	38, 68, 320, 888
BtsCI	GGATG	3 cut(s)	160, 346, 1017
BtsIMutI	CAGTG	3 cut(s)	142, 156, 827
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	5 cut(s)	131, 322, 425, 744, 890
Cfr10I	RCCGGY	8 cut(s)	453, 715, 742, 755, 830, 888, 910, 992
Cfr13I	GGNCC	5 cut(s)	36, 195, 514, 833, 842
CseI	GACGC	1 cut(s)	859
Csp6I	GTAC	1 cut(s)	412
CspAI	ACCGGT	4 cut(s)	453, 755, 830, 992
CviAII	CATG	4 cut(s)	25, 86, 498, 694
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	3 cut(s)	148, 483, 819
DraI	TTTAAA	1 cut(s)	444
DraIII	CACNNNGTG	2 cut(s)	379, 584
DriI	GACNNNNNGTC	1 cut(s)	592
EaeI	YGGCCR	2 cut(s)	318, 886
EagI	CGGCCG	1 cut(s)	886
Eam1104I	CTCTTC	3 cut(s)	216, 411, 974
Eam1105I	GACNNNNNGTC	1 cut(s)	592
EarI	CTCTTC	3 cut(s)	216, 411, 974
Ecl136II	GAGCTC	1 cut(s)	400
EclXI	CGGCCG	1 cut(s)	886
Eco24I	GRGCYC	1 cut(s)	402
Eco47I	GGWCC	4 cut(s)	195, 514, 833, 842
Eco52I	CGGCCG	1 cut(s)	886
Eco53kI	GAGCTC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	624
EcoICRI	GAGCTC	1 cut(s)	400
EcoO109I	RGGNCCY	2 cut(s)	36, 514
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	1006
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	4 cut(s)	28, 89, 501, 697
FaiI	YATR	7 cut(s)	26, 87, 499, 671, 695, 770, 906
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	4 cut(s)	24, 85, 497, 693
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	2 cut(s)	720, 793
FokI	GGATG	3 cut(s)	167, 353, 1024
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	2 cut(s)	720, 793
FspBI	CTAG	2 cut(s)	218, 479
GluI	GCNGC	2 cut(s)	720, 793
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	4 cut(s)	38, 68, 320, 888
HgaI	GACGC	1 cut(s)	859
Hin1II	CATG	4 cut(s)	28, 89, 501, 697
HincII	GTYRAC	3 cut(s)	78, 312, 657
HindII	GTYRAC	3 cut(s)	78, 312, 657
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	7 cut(s)	257, 272, 308, 386, 587, 778, 1024
HphI	GGTGA	7 cut(s)	295, 582, 596, 667, 770, 947, 1007
Hpy166II	GTNNAC	7 cut(s)	78, 312, 382, 657, 688, 836, 943
Hpy188I	TCNGA	6 cut(s)	397, 460, 783, 810, 842, 924
Hpy188III	TCNNGA	3 cut(s)	164, 338, 899
Hpy8I	GTNNAC	7 cut(s)	78, 312, 382, 657, 688, 836, 943
Hpy99I	CGWCG	1 cut(s)	625
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	594
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	5 cut(s)	4, 24, 119, 543, 792
HpyF10VI	GCNNNNNNNGC	4 cut(s)	499, 508, 540, 798
HpyF3I	CTNAG	3 cut(s)	148, 483, 819
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	4 cut(s)	28, 89, 501, 697
Kpn2I	TCCGGA	2 cut(s)	337, 898
KroI	GCCGGC	2 cut(s)	742, 888
KroNI	GCCGGC	2 cut(s)	744, 890
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	2 cut(s)	706, 804
MaeI	CTAG	2 cut(s)	218, 479
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	2 cut(s)	112, 584
MhlI	GDGCHC	2 cut(s)	135, 402
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	4 cut(s)	120, 182, 283, 289
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	5 cut(s)	251, 266, 317, 380, 581
MmeI	TCCRAC	1 cut(s)	947
Mox20I	TGGCCA	1 cut(s)	320
MroI	TCCGGA	2 cut(s)	337, 898
MroNI	GCCGGC	2 cut(s)	742, 888
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	4 cut(s)	71, 92, 443, 599
Msp20I	TGGCCA	1 cut(s)	320
MspR9I	CCNGG	4 cut(s)	518, 683, 1008, 1029
MvaI	CCWGG	1 cut(s)	1008
MwoI	GCNNNNNNNGC	4 cut(s)	499, 508, 540, 798
NaeI	GCCGGC	2 cut(s)	744, 890
NciI	CCSGG	3 cut(s)	518, 683, 1029
NgoMIV	GCCGGC	2 cut(s)	742, 888
NlaIII	CATG	4 cut(s)	28, 89, 501, 697
NlaIV	GGNNCC	6 cut(s)	196, 516, 575, 714, 844, 1005
NmuCI	GTSAC	1 cut(s)	584
NspV	TTCGAA	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	216
PdiI	GCCGGC	2 cut(s)	744, 890
PfeI	GAWTC	2 cut(s)	778, 1024
PinAI	ACCGGT	4 cut(s)	453, 755, 830, 992
PkrI	GCNGC	2 cut(s)	721, 794
PleI	GAGTC	5 cut(s)	251, 266, 316, 380, 581
PpsI	GAGTC	5 cut(s)	251, 266, 316, 380, 581
PpuMI	RGGWCCY	1 cut(s)	514
Psp124BI	GAGCTC	1 cut(s)	402
Psp1406I	AACGTT	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	1006
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	1006
PspN4I	GGNNCC	6 cut(s)	196, 516, 575, 714, 844, 1005
PspPI	GGNCC	5 cut(s)	36, 195, 514, 833, 842
PspPPI	RGGWCCY	1 cut(s)	514
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SacI	GAGCTC	1 cut(s)	402
SalI	GTCGAC	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	4 cut(s)	71, 92, 443, 599
SatI	GCNGC	2 cut(s)	720, 793
Sau96I	GGNCC	5 cut(s)	36, 195, 514, 833, 842
SchI	GAGTC	5 cut(s)	251, 266, 317, 380, 581
ScrFI	CCNGG	4 cut(s)	518, 683, 1008, 1029
SduI	GDGCHC	2 cut(s)	135, 402
SfuI	TTCGAA	1 cut(s)	186
SinI	GGWCC	4 cut(s)	195, 514, 833, 842
Sse9I	AATT	4 cut(s)	120, 182, 283, 289
SsiI	CCGC	1 cut(s)	746
SspMI	CTAG	2 cut(s)	218, 479
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	4 cut(s)	516, 681, 1006, 1027
TaaI	ACNGT	1 cut(s)	594
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	6 cut(s)	47, 77, 186, 874, 947, 958
TaqII	GACCGA	1 cut(s)	552
TasI	AATT	4 cut(s)	120, 182, 283, 289
TfiI	GAWTC	2 cut(s)	778, 1024
Tru1I	TTAA	4 cut(s)	71, 92, 443, 599
Tru9I	TTAA	4 cut(s)	71, 92, 443, 599
TscAI	CASTG	3 cut(s)	142, 156, 827
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	2 cut(s)	719, 792
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	2 cut(s)	486, 639
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	3 cut(s)	142, 156, 827
VpaK11BI	GGWCC	4 cut(s)	195, 514, 833, 842
XapI	RAATTY	2 cut(s)	182, 283
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	2 cut(s)	218, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.