Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010802

Physical Location & Seq

Genomic Coordinates Forward (+)

20097096 .. 20099334

Gene Structure 2239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGCTGTGCATGGAAGCAAGGGCCTTGAAGTCGAGTTTGCTTACAGAACTGGCCTTAAAGTCGACCCAGCATGCTTTAATGGAGGAGTTTTGGGGTGCTACTGCAATTTCCGGCGTGCCCAGTGAGGATTTCTCAGTGGATGACCTTCTTGACTTCTCTAATGGCGAATTCGAAGATGGGTCCGTTGAAGAAGAACAAGAACTAGAAGAACAGGAAGAAGAAGAAGAAGAAGAAGACAAAGACTCTGTTTCAATGGACTCTGTTGAAAATTCCAATTCCAGCAACTTCACCGAGTCAACTCTGGCCAGCCATCTCGCCGTTCCGGATGATGATTTAGCAGAGCTTGAATGGGTTTCTCACTTTGTGGACGACTCTGTTTCGGAGCTCTCTCTTCTGCACCCAGTTAGCAAGCAAAAACCGGAAGCTTTAAAAGAGAACCGGTCTGAACCGGAGGCAAGAAGACTAGCTCAGTCAAGGCTTTCATGGCTTCCCTCGCAGGTCCCGGTCAAAGCCAGAAGCAAACGTTGCAGACCAGCTGGTCGGTCTCGGTCATTGTGGAACCCACTTGGTGACTCACCGTCTCTAACGCCTTGTTTATCTTCGCCGTCGTCATCGTCTTGTTCTTCAGGGTTTTCATTGTCAACGCCTTGTCTTATATTCACCAGCCCGGTTCACAACATGGGGTTGTTTTCAGGGGAACCGGCTGCCAAGAAGCAAAAGAGAAAGCCGGCGGTTCAAACCGGTGATGAGGTTATAGTTGGGATTCAGAGGAAGTGCAGCCATTGCCAAGTTCAGAAGACCCCTCAGTGGAGAACCGGTCCACTCGGACCGAAGACGCTGTGTAATGCGTGTGGGGTTCGATACAAGTCCGGCCGGCTGTTTCCGGAGTATAGACCGGCTTGTAGTCCGACTTTTTCGGGTGATGTTCACTCGAATAGTCATCGAAAAGTTTTGGAGATGAGGAAGAGGAAAGATACCGGTGAGCCGGAACCAGGGATGAGCAAGATGATTCCGGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

341

Amino Acids

37.63

Weight (kDa)

5.16

Isoelectric Point (pI)

66.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	260 - 293	1.8e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36240
fragaria_vesca	FvH4_2g10220 FvH4_2g10220 FvH4_2g10220
malus_domestica	MD05G1055800.v1.1 MD10G1064300.v1.1
prunus_persica	Prupe.8G086100_v2.0.a1
pyrus_communis	pycom05g04720 pycom10g05020
rosa_chinensis	RchiOBHm_Chr6g0267451
rosa_laevigata	RLG00000014002
rosa_multiflora	Rmu_co8362579.1_g000001 Rmu_sc0007301.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200760
rosa_rugosa	Rorug06G0032800
rosa_samantha	Rh6AG154100 Rh6BG154400 Rh6CG149900 Rh6DG139600
rosa_wichuraiana	Rw6G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	540
Acc36I	ACCTGC	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	65
AccIII	TCCGGA	2 cut(s)	325, 886
AciI	CCGC	1 cut(s)	734
AclI	AACGTT	1 cut(s)	526
AcoI	YGGCCR	2 cut(s)	306, 874
AcsI	RAATTY	2 cut(s)	170, 271
AcuI	CTGAAG	1 cut(s)	612
AdeI	CACNNNGTG	2 cut(s)	367, 572
AfiI	CCNNNNNNNGG	2 cut(s)	810, 995
AgeI	ACCGGT	4 cut(s)	441, 743, 818, 980
AgsI	TTSAA	6 cut(s)	31, 191, 255, 269, 350, 740
AhdI	GACNNNNNGTC	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	994
AluBI	AGCT	6 cut(s)	7, 346, 388, 428, 470, 539
AluI	AGCT	6 cut(s)	7, 346, 388, 428, 470, 539
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	552, 588
Aor13HI	TCCGGA	2 cut(s)	325, 886
AoxI	GGCC	4 cut(s)	24, 54, 306, 874
ApeKI	GCWGC	2 cut(s)	707, 780
ApoI	RAATTY	2 cut(s)	170, 271
AsiGI	ACCGGT	4 cut(s)	441, 743, 818, 980
AspS9I	GGNCC	5 cut(s)	24, 183, 502, 821, 830
AsuC2I	CCSGG	3 cut(s)	506, 671, 1017
AsuHPI	GGTGA	7 cut(s)	283, 570, 584, 655, 758, 935, 995
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	4 cut(s)	183, 502, 821, 830
BaeGI	GKGCMC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	390
BbsI	GAAGAC	4 cut(s)	243, 469, 806, 842
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	694, 792
BccI	CCATC	2 cut(s)	173, 321
BceAI	ACGGC	2 cut(s)	305, 592
BciT130I	CCWGG	1 cut(s)	996
BcnI	CCSGG	3 cut(s)	506, 671, 1017
BcoDI	GTCTC	2 cut(s)	552, 588
BfaI	CTAG	2 cut(s)	206, 467
BfuAI	ACCTGC	1 cut(s)	490
BisI	GCNGC	2 cut(s)	708, 781
BlsI	GCNGC	2 cut(s)	709, 782
Bme1390I	CCNGG	4 cut(s)	506, 671, 996, 1017
Bme18I	GGWCC	4 cut(s)	183, 502, 821, 830
BmeRI	GACNNNNNGTC	1 cut(s)	580
BmgT120I	GGNCC	5 cut(s)	24, 183, 502, 821, 830
BmiI	GGNNCC	5 cut(s)	184, 504, 563, 702, 993
BmrFI	CCNGG	4 cut(s)	506, 671, 996, 1017
BmrI	ACTGGG	2 cut(s)	117, 398
BmuI	ACTGGG	2 cut(s)	117, 398
BpiI	GAAGAC	4 cut(s)	243, 469, 806, 842
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
Bpu14I	TTCGAA	1 cut(s)	174
BpuMI	CCSGG	3 cut(s)	506, 671, 1017
BsaI	GGTCTC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	995
BsaWI	WCCGGW	8 cut(s)	325, 421, 441, 451, 743, 818, 886, 980
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	2 cut(s)	810, 995
Bse118I	RCCGGY	8 cut(s)	441, 703, 730, 743, 818, 876, 898, 980
Bse1I	ACTGG	3 cut(s)	57, 123, 404
Bse3DI	GCAATG	1 cut(s)	784
BseAI	TCCGGA	2 cut(s)	325, 886
BseBI	CCWGG	1 cut(s)	996
BseDI	CCNNGG	1 cut(s)	995
BseGI	GGATG	3 cut(s)	148, 334, 1005
BseLI	CCNNNNNNNGG	2 cut(s)	810, 995
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	3 cut(s)	150, 485, 821
BseNI	ACTGG	3 cut(s)	57, 123, 404
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	123
BseX3I	CGGCCG	1 cut(s)	874
BseXI	GCAGC	2 cut(s)	694, 792
BseYI	CCCAGC	1 cut(s)	69
BsgI	GTGCAG	2 cut(s)	383, 799
Bsh1285I	CGRYCG	1 cut(s)	877
BshFI	GGCC	4 cut(s)	26, 56, 308, 876
BshTI	ACCGGT	4 cut(s)	441, 743, 818, 980
BsiEI	CGRYCG	1 cut(s)	877
BsiHKAI	GWGCWC	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	2 cut(s)	810, 995
BsmAI	GTCTC	2 cut(s)	552, 588
BsmBI	CGTCTC	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	4 cut(s)	26, 56, 308, 876
Bso31I	GGTCTC	1 cut(s)	552
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	123, 390
Bsp13I	TCCGGA	2 cut(s)	325, 886
BspACI	CCGC	1 cut(s)	734
BspANI	GGCC	4 cut(s)	26, 56, 308, 876
BspCNI	CTCAG	3 cut(s)	149, 484, 820
BspEI	TCCGGA	2 cut(s)	325, 886
BspLI	GGNNCC	5 cut(s)	184, 504, 563, 702, 993
BspMI	ACCTGC	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	552
BsrDI	GCAATG	1 cut(s)	784
BsrFI	RCCGGY	8 cut(s)	441, 703, 730, 743, 818, 876, 898, 980
BsrI	ACTGG	3 cut(s)	57, 123, 404
BssAI	RCCGGY	8 cut(s)	441, 703, 730, 743, 818, 876, 898, 980
BssECI	CCNNGG	1 cut(s)	995
Bst2UI	CCWGG	1 cut(s)	996
Bst4CI	ACNGT	1 cut(s)	582
Bst6I	CTCTTC	2 cut(s)	399, 962
BstAPI	GCANNNNNTGC	2 cut(s)	528, 786
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	6 cut(s)	75, 119, 310, 413, 732, 878
BstDEI	CTNAG	3 cut(s)	136, 471, 807
BstF5I	GGATG	3 cut(s)	148, 334, 1005
BstMAI	GTCTC	2 cut(s)	552, 588
BstMCI	CGRYCG	1 cut(s)	877
BstMWI	GCNNNNNNNGC	4 cut(s)	487, 496, 528, 786
BstNI	CCWGG	1 cut(s)	996
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	4 cut(s)	504, 669, 994, 1015
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	694, 792
BstV2I	GAAGAC	4 cut(s)	243, 469, 806, 842
BstZI	CGGCCG	1 cut(s)	874
BsuRI	GGCC	4 cut(s)	26, 56, 308, 876
BtsCI	GGATG	3 cut(s)	148, 334, 1005
BtsIMutI	CAGTG	3 cut(s)	130, 144, 815
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	6 cut(s)	75, 119, 310, 413, 732, 878
Cfr10I	RCCGGY	8 cut(s)	441, 703, 730, 743, 818, 876, 898, 980
Cfr13I	GGNCC	5 cut(s)	24, 183, 502, 821, 830
CpoI	CGGWCCG	1 cut(s)	830
CseI	GACGC	1 cut(s)	847
CspAI	ACCGGT	4 cut(s)	441, 743, 818, 980
CspI	CGGWCCG	1 cut(s)	830
CviAII	CATG	4 cut(s)	13, 74, 486, 682
DdeI	CTNAG	3 cut(s)	136, 471, 807
DraI	TTTAAA	1 cut(s)	432
DraIII	CACNNNGTG	2 cut(s)	367, 572
DrdI	GACNNNNNNGTC	1 cut(s)	540
DriI	GACNNNNNGTC	1 cut(s)	580
DseDI	GACNNNNNNGTC	1 cut(s)	540
EaeI	YGGCCR	2 cut(s)	306, 874
EagI	CGGCCG	1 cut(s)	874
Eam1104I	CTCTTC	2 cut(s)	399, 962
Eam1105I	GACNNNNNGTC	1 cut(s)	580
EarI	CTCTTC	2 cut(s)	399, 962
Ecl136II	GAGCTC	1 cut(s)	388
EclXI	CGGCCG	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	552
Eco47I	GGWCC	4 cut(s)	183, 502, 821, 830
Eco52I	CGGCCG	1 cut(s)	874
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	612
EcoICRI	GAGCTC	1 cut(s)	388
EcoO109I	RGGNCCY	2 cut(s)	24, 502
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	994
EcoT38I	GRGCYC	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	588
FaeI	CATG	4 cut(s)	16, 77, 489, 685
FaiI	YATR	7 cut(s)	14, 75, 487, 659, 683, 758, 894
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	4 cut(s)	12, 73, 485, 681
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	708, 781
FokI	GGATG	3 cut(s)	155, 341, 1012
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	708, 781
FspBI	CTAG	2 cut(s)	206, 467
GluI	GCNGC	2 cut(s)	708, 781
GsaI	CCCAGC	1 cut(s)	73
HaeIII	GGCC	4 cut(s)	26, 56, 308, 876
HgaI	GACGC	1 cut(s)	847
Hin1II	CATG	4 cut(s)	16, 77, 489, 685
HincII	GTYRAC	3 cut(s)	66, 300, 645
HindII	GTYRAC	3 cut(s)	66, 300, 645
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	7 cut(s)	245, 260, 296, 374, 575, 766, 1012
HphI	GGTGA	7 cut(s)	283, 570, 584, 655, 758, 935, 995
Hpy166II	GTNNAC	7 cut(s)	66, 300, 370, 645, 676, 824, 931
Hpy188I	TCNGA	6 cut(s)	385, 448, 771, 798, 830, 912
Hpy188III	TCNNGA	3 cut(s)	152, 326, 887
Hpy8I	GTNNAC	7 cut(s)	66, 300, 370, 645, 676, 824, 931
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	582
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	5 cut(s)	12, 107, 400, 531, 780
HpyF10VI	GCNNNNNNNGC	4 cut(s)	487, 496, 528, 786
HpyF3I	CTNAG	3 cut(s)	136, 471, 807
HpySE526I	ACGT	1 cut(s)	526
Hsp92II	CATG	4 cut(s)	16, 77, 489, 685
Kpn2I	TCCGGA	2 cut(s)	325, 886
KroI	GCCGGC	2 cut(s)	730, 876
KroNI	GCCGGC	2 cut(s)	732, 878
LmnI	GCTCC	2 cut(s)	4, 385
Lsp1109I	GCAGC	2 cut(s)	694, 792
MaeI	CTAG	2 cut(s)	206, 467
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	1 cut(s)	572
MhlI	GDGCHC	2 cut(s)	123, 390
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	4 cut(s)	108, 170, 271, 277
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	5 cut(s)	239, 254, 305, 368, 569
MmeI	TCCRAC	1 cut(s)	935
MnlI	CCTC	9 cut(s)	79, 121, 448, 505, 745, 765, 816, 957, 963
Mox20I	TGGCCA	1 cut(s)	308
MroI	TCCGGA	2 cut(s)	325, 886
MroNI	GCCGGC	2 cut(s)	730, 876
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	3 cut(s)	59, 80, 431
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	539
MspR9I	CCNGG	4 cut(s)	506, 671, 996, 1017
MvaI	CCWGG	1 cut(s)	996
MwoI	GCNNNNNNNGC	4 cut(s)	487, 496, 528, 786
NaeI	GCCGGC	2 cut(s)	732, 878
NciI	CCSGG	3 cut(s)	506, 671, 1017
NgoMIV	GCCGGC	2 cut(s)	730, 876
NlaIII	CATG	4 cut(s)	16, 77, 489, 685
NlaIV	GGNNCC	5 cut(s)	184, 504, 563, 702, 993
NmuCI	GTSAC	1 cut(s)	572
NspI	RCATGY	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	174
PaeI	GCATGC	1 cut(s)	77
PdiI	GCCGGC	2 cut(s)	732, 878
PfeI	GAWTC	2 cut(s)	766, 1012
PinAI	ACCGGT	4 cut(s)	441, 743, 818, 980
PkrI	GCNGC	2 cut(s)	709, 782
PleI	GAGTC	5 cut(s)	239, 254, 304, 368, 569
PpsI	GAGTC	5 cut(s)	239, 254, 304, 368, 569
PpuMI	RGGWCCY	1 cut(s)	502
Psp124BI	GAGCTC	1 cut(s)	390
Psp1406I	AACGTT	1 cut(s)	526
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	994
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	994
PspN4I	GGNNCC	5 cut(s)	184, 504, 563, 702, 993
PspPI	GGNCC	5 cut(s)	24, 183, 502, 821, 830
PspPPI	RGGWCCY	1 cut(s)	502
PvuII	CAGCTG	1 cut(s)	539
Rsr2I	CGGWCCG	1 cut(s)	830
RsrII	CGGWCCG	1 cut(s)	830
SacI	GAGCTC	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	3 cut(s)	59, 80, 431
SatI	GCNGC	2 cut(s)	708, 781
Sau96I	GGNCC	5 cut(s)	24, 183, 502, 821, 830
SchI	GAGTC	5 cut(s)	239, 254, 305, 368, 569
ScrFI	CCNGG	4 cut(s)	506, 671, 996, 1017
SduI	GDGCHC	2 cut(s)	123, 390
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	4 cut(s)	183, 502, 821, 830
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	4 cut(s)	108, 170, 271, 277
SsiI	CCGC	1 cut(s)	734
SspMI	CTAG	2 cut(s)	206, 467
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	4 cut(s)	504, 669, 994, 1015
TaaI	ACNGT	1 cut(s)	582
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	6 cut(s)	35, 65, 174, 862, 935, 946
TaqII	GACCGA	3 cut(s)	534, 540, 847
TasI	AATT	4 cut(s)	108, 170, 271, 277
TfiI	GAWTC	2 cut(s)	766, 1012
Tru1I	TTAA	3 cut(s)	59, 80, 431
Tru9I	TTAA	3 cut(s)	59, 80, 431
TscAI	CASTG	3 cut(s)	130, 144, 815
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	2 cut(s)	707, 780
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	2 cut(s)	474, 627
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	3 cut(s)	130, 144, 815
VpaK11BI	GGWCC	4 cut(s)	183, 502, 821, 830
XapI	RAATTY	2 cut(s)	170, 271
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	2 cut(s)	206, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.