Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010802

Physical Location & Seq

Genomic Coordinates Reverse (-)

48122094 .. 48123092

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAGCTGTGCATGGAAGCAAGGGCCTTGAAGTCGAGTTTGCTTAGAGAAGTGGCCTTAAAGTCGACCCAGCATGCTTTAATGGAGGAGCTTTGGTGTGCTACTGCAATTTCCGGCGTGCCCAGTGAGGATTTCTCAGTGGATGACCTTCTTGACTTCTCTAATGGCGAATTCGAAGATGGGTCCGTTGAAGAAGAACAAGAACTAGAAGAACAGGAGGAAGAAGAAGAAGAAGAAGACAAAGACTCTGTTTCAATGGACTCTGTTGAAAATTCCAATTCCAGCAACTTCACCGAGTCAACTCTGGCCAGCCATCTCGCCGTTCCGGATGATGATTTAGCAGAGCTTGAATGGGTTTCTCACTTTGTGGACGACTCTGTTTCGGAGCTCTCTCTTCTGCACCCAGTCCCGGTCAAAGCCAGAAGCAAACGTTGCAGACCAGCTGGTCGGTCTCGGTCATTGTGGAACCCACTTGGTGACTCACCGTCTTTAACGCCTTGTTTATCTTCGCCGTCGTCATCGTCTTGTTCTTCAGGGTTTTCATTGTCAACGCCTTGTCTTATATTCACCAACCGGGTTCACAACATGGGGTTGTTTTCAGGGGAACCGGCTGCCAAGAAGCAAAAGAGAAAGCCGGCGGTTCAAACCGGTGATGAGGTTATAGTTGGGATTCAGAGGAAGTGCAGCCATTGCCAAGTTCAGAAGACCCCTCAGTGGAGAACCGGTCCACTCGGACCCAAGACGCTGTGTAATGCGTGTGGGGTTCGATACAAGTCCGGCCGGCTGTTTCCCGGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

266

Amino Acids

29.15

Weight (kDa)

4.78

Isoelectric Point (pI)

60.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	228 - 261	1.3e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36240
fragaria_vesca	FvH4_2g10220 FvH4_2g10220 FvH4_2g10220
malus_domestica	MD05G1055800.v1.1 MD10G1064300.v1.1
prunus_persica	Prupe.8G086100_v2.0.a1
pyrus_communis	pycom05g04720 pycom10g05020
rosa_chinensis	RchiOBHm_Chr6g0267451
rosa_laevigata	RLG00000014002
rosa_multiflora	Rmu_co8362579.1_g000001 Rmu_sc0007301.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200760
rosa_rugosa	Rorug06G0032800
rosa_samantha	Rh6AG154100 Rh6BG154400 Rh6CG149900 Rh6DG139600
rosa_wichuraiana	Rw6G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	65
AccIII	TCCGGA	1 cut(s)	325
AciI	CCGC	1 cut(s)	638
AclI	AACGTT	1 cut(s)	430
AcoI	YGGCCR	2 cut(s)	306, 778
AcsI	RAATTY	2 cut(s)	170, 271
AcuI	CTGAAG	1 cut(s)	516
AdeI	CACNNNGTG	2 cut(s)	367, 476
AfiI	CCNNNNNNNGG	2 cut(s)	409, 714
AgeI	ACCGGT	2 cut(s)	647, 722
AgsI	TTSAA	6 cut(s)	31, 191, 255, 269, 350, 644
AhdI	GACNNNNNGTC	1 cut(s)	484
AluBI	AGCT	5 cut(s)	7, 91, 346, 388, 443
AluI	AGCT	5 cut(s)	7, 91, 346, 388, 443
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	456
Aor13HI	TCCGGA	1 cut(s)	325
AoxI	GGCC	4 cut(s)	24, 54, 306, 778
ApeKI	GCWGC	2 cut(s)	611, 684
ApoI	RAATTY	2 cut(s)	170, 271
AsiGI	ACCGGT	2 cut(s)	647, 722
AspS9I	GGNCC	4 cut(s)	24, 183, 725, 734
AsuC2I	CCSGG	3 cut(s)	410, 575, 792
AsuHPI	GGTGA	5 cut(s)	283, 474, 488, 559, 662
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	3 cut(s)	183, 725, 734
BaeGI	GKGCMC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	390
BbsI	GAAGAC	2 cut(s)	243, 710
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	598, 696
BccI	CCATC	2 cut(s)	173, 321
BceAI	ACGGC	2 cut(s)	305, 496
BcnI	CCSGG	3 cut(s)	410, 575, 792
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	2 cut(s)	612, 685
BlsI	GCNGC	2 cut(s)	613, 686
Bme1390I	CCNGG	3 cut(s)	410, 575, 792
Bme18I	GGWCC	3 cut(s)	183, 725, 734
BmeRI	GACNNNNNGTC	1 cut(s)	484
BmgT120I	GGNCC	4 cut(s)	24, 183, 725, 734
BmiI	GGNNCC	4 cut(s)	184, 467, 606, 736
BmrFI	CCNGG	3 cut(s)	410, 575, 792
BmrI	ACTGGG	2 cut(s)	117, 398
BmuI	ACTGGG	2 cut(s)	117, 398
BpiI	GAAGAC	2 cut(s)	243, 710
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
Bpu14I	TTCGAA	1 cut(s)	174
BpuMI	CCSGG	3 cut(s)	410, 575, 792
BsaI	GGTCTC	1 cut(s)	456
BsaWI	WCCGGW	3 cut(s)	325, 647, 722
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 709, 739
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 714
Bse118I	RCCGGY	5 cut(s)	607, 634, 647, 722, 780
Bse1I	ACTGG	2 cut(s)	123, 404
Bse3DI	GCAATG	1 cut(s)	688
BseAI	TCCGGA	1 cut(s)	325
BseGI	GGATG	2 cut(s)	148, 334
BseLI	CCNNNNNNNGG	2 cut(s)	409, 714
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	2 cut(s)	150, 725
BseNI	ACTGG	2 cut(s)	123, 404
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	123
BseX3I	CGGCCG	1 cut(s)	778
BseXI	GCAGC	2 cut(s)	598, 696
BseYI	CCCAGC	1 cut(s)	69
BsgI	GTGCAG	2 cut(s)	383, 703
Bsh1285I	CGRYCG	1 cut(s)	781
BshFI	GGCC	4 cut(s)	26, 56, 308, 780
BshTI	ACCGGT	2 cut(s)	647, 722
BsiEI	CGRYCG	1 cut(s)	781
BsiHKAI	GWGCWC	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	409, 714
BsmAI	GTCTC	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	4 cut(s)	26, 56, 308, 780
Bso31I	GGTCTC	1 cut(s)	456
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	123, 390
Bsp13I	TCCGGA	1 cut(s)	325
BspACI	CCGC	1 cut(s)	638
BspANI	GGCC	4 cut(s)	26, 56, 308, 780
BspCNI	CTCAG	2 cut(s)	149, 724
BspEI	TCCGGA	1 cut(s)	325
BspLI	GGNNCC	4 cut(s)	184, 467, 606, 736
BspT104I	TTCGAA	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	688
BsrFI	RCCGGY	5 cut(s)	607, 634, 647, 722, 780
BsrI	ACTGG	2 cut(s)	123, 404
BssAI	RCCGGY	5 cut(s)	607, 634, 647, 722, 780
Bst4CI	ACNGT	1 cut(s)	486
Bst6I	CTCTTC	1 cut(s)	399
BstAPI	GCANNNNNTGC	2 cut(s)	432, 690
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	5 cut(s)	75, 119, 310, 636, 782
BstDEI	CTNAG	3 cut(s)	44, 136, 711
BstF5I	GGATG	2 cut(s)	148, 334
BstMAI	GTCTC	1 cut(s)	456
BstMCI	CGRYCG	1 cut(s)	781
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 690
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	3 cut(s)	408, 573, 790
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	598, 696
BstV2I	GAAGAC	2 cut(s)	243, 710
BstZI	CGGCCG	1 cut(s)	778
BsuRI	GGCC	4 cut(s)	26, 56, 308, 780
BtsCI	GGATG	2 cut(s)	148, 334
BtsIMutI	CAGTG	3 cut(s)	130, 144, 719
Cac8I	GCNNGC	5 cut(s)	75, 119, 310, 636, 782
Cfr10I	RCCGGY	5 cut(s)	607, 634, 647, 722, 780
Cfr13I	GGNCC	4 cut(s)	24, 183, 725, 734
CseI	GACGC	1 cut(s)	751
CspAI	ACCGGT	2 cut(s)	647, 722
CviAII	CATG	3 cut(s)	13, 74, 586
DdeI	CTNAG	3 cut(s)	44, 136, 711
DraIII	CACNNNGTG	2 cut(s)	367, 476
DrdI	GACNNNNNNGTC	1 cut(s)	444
DriI	GACNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	1 cut(s)	444
EaeI	YGGCCR	2 cut(s)	306, 778
EagI	CGGCCG	1 cut(s)	778
Eam1104I	CTCTTC	1 cut(s)	399
Eam1105I	GACNNNNNGTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	399
Ecl136II	GAGCTC	1 cut(s)	388
EclXI	CGGCCG	1 cut(s)	778
Eco24I	GRGCYC	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	3 cut(s)	183, 725, 734
Eco52I	CGGCCG	1 cut(s)	778
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	516
EcoICRI	GAGCTC	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	390
FaeI	CATG	3 cut(s)	16, 77, 589
FaiI	YATR	6 cut(s)	14, 75, 563, 587, 662, 799
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	3 cut(s)	12, 73, 585
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	612, 685
FokI	GGATG	2 cut(s)	155, 341
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	612, 685
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	2 cut(s)	612, 685
GsaI	CCCAGC	1 cut(s)	73
HaeIII	GGCC	4 cut(s)	26, 56, 308, 780
HgaI	GACGC	1 cut(s)	751
Hin1II	CATG	3 cut(s)	16, 77, 589
HincII	GTYRAC	3 cut(s)	66, 300, 549
HindII	GTYRAC	3 cut(s)	66, 300, 549
HinfI	GANTC	6 cut(s)	245, 260, 296, 374, 479, 670
HphI	GGTGA	5 cut(s)	283, 474, 488, 559, 662
Hpy166II	GTNNAC	6 cut(s)	66, 300, 370, 549, 580, 728
Hpy188I	TCNGA	4 cut(s)	385, 675, 702, 734
Hpy188III	TCNNGA	2 cut(s)	152, 326
Hpy8I	GTNNAC	6 cut(s)	66, 300, 370, 549, 580, 728
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	5 cut(s)	12, 107, 400, 435, 684
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 690
HpyF3I	CTNAG	3 cut(s)	44, 136, 711
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	3 cut(s)	16, 77, 589
Kpn2I	TCCGGA	1 cut(s)	325
KroI	GCCGGC	2 cut(s)	634, 780
KroNI	GCCGGC	2 cut(s)	636, 782
LmnI	GCTCC	3 cut(s)	4, 88, 385
Lsp1109I	GCAGC	2 cut(s)	598, 696
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	123, 390
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	4 cut(s)	108, 170, 271, 277
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	5 cut(s)	239, 254, 305, 368, 473
MnlI	CCTC	6 cut(s)	79, 121, 211, 649, 669, 720
Mox20I	TGGCCA	1 cut(s)	308
MroI	TCCGGA	1 cut(s)	325
MroNI	GCCGGC	2 cut(s)	634, 780
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	3 cut(s)	59, 80, 491
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	3 cut(s)	410, 575, 792
MwoI	GCNNNNNNNGC	2 cut(s)	432, 690
NaeI	GCCGGC	2 cut(s)	636, 782
NciI	CCSGG	3 cut(s)	410, 575, 792
NgoMIV	GCCGGC	2 cut(s)	634, 780
NlaIII	CATG	3 cut(s)	16, 77, 589
NlaIV	GGNNCC	4 cut(s)	184, 467, 606, 736
NmuCI	GTSAC	1 cut(s)	476
NspI	RCATGY	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	174
PaeI	GCATGC	1 cut(s)	77
PdiI	GCCGGC	2 cut(s)	636, 782
PfeI	GAWTC	1 cut(s)	670
PfoI	TCCNGGA	1 cut(s)	790
PinAI	ACCGGT	2 cut(s)	647, 722
PkrI	GCNGC	2 cut(s)	613, 686
PleI	GAGTC	5 cut(s)	239, 254, 304, 368, 473
PpsI	GAGTC	5 cut(s)	239, 254, 304, 368, 473
Psp124BI	GAGCTC	1 cut(s)	390
Psp1406I	AACGTT	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	69
PspN4I	GGNNCC	4 cut(s)	184, 467, 606, 736
PspPI	GGNCC	4 cut(s)	24, 183, 725, 734
PvuII	CAGCTG	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	3 cut(s)	59, 80, 491
SatI	GCNGC	2 cut(s)	612, 685
Sau96I	GGNCC	4 cut(s)	24, 183, 725, 734
SchI	GAGTC	5 cut(s)	239, 254, 305, 368, 473
ScrFI	CCNGG	3 cut(s)	410, 575, 792
SduI	GDGCHC	2 cut(s)	123, 390
SetI	ASST	8 cut(s)	9, 93, 150, 348, 390, 433, 445, 660
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	3 cut(s)	183, 725, 734
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	4 cut(s)	108, 170, 271, 277
SsiI	CCGC	1 cut(s)	638
SspMI	CTAG	1 cut(s)	206
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	408, 573, 790
TaaI	ACNGT	1 cut(s)	486
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	4 cut(s)	35, 65, 174, 766
TaqII	GACCGA	2 cut(s)	438, 444
TasI	AATT	4 cut(s)	108, 170, 271, 277
TfiI	GAWTC	1 cut(s)	670
Tru1I	TTAA	3 cut(s)	59, 80, 491
Tru9I	TTAA	3 cut(s)	59, 80, 491
TscAI	CASTG	3 cut(s)	130, 144, 719
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	2 cut(s)	611, 684
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	531
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	3 cut(s)	130, 144, 719
VpaK11BI	GGWCC	3 cut(s)	183, 725, 734
XapI	RAATTY	2 cut(s)	170, 271
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.