Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010802

Physical Location & Seq

Genomic Coordinates Reverse (-)

8726692 .. 8728277

Gene Structure 1586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1064300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAACCGGTTTGAACCGGAACCCAAACCGGTTCCATTAAGAGCTCCGTTGTTTCCTTTTCAAGTTCCAGTCAAACCCAGAACCAAGCGTTACAAACCGGCTAGCCGGGTTTGGTCCTCCTCCTCTTCATGTTCACCATCATCATCGCCTTGTTCTTCCGGGTTTTCATTTTCAACTCCTTGTCTTATCTTCAACCCGGTTCAAAGCATGGACGTGTTTGTTGGTGAACCGGCGGCTAAGAAACAAAAGAAAAAACCGGCGGTCCAAACAGGGGAGGGTTCAATTGGGGGACAGTTTCAGCGGAGGTGTAGTCATTGCCAAGTACAGAAGACTCCGCAATGGAGAACCGGTCCACTTGGTCCTAAAACATTGTGTAACGCATGCGGCGTCCGGTTCAAGTCTGGCCGGCTTTTTCCGGAGTATAGGCCGGCTTGTAGTCCTACTTTCTCTGGTGCTGTCCACTCGAATAGTCACCGTAAAGTGTTGGAGATGAGGAAGAGGAAAGATGTTGGCGAGCCCGAACCGCTGTTGAACCGAATGATTCGGAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

185

Amino Acids

20.5

Weight (kDa)

10.37

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	103 - 136	7.3e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36240
fragaria_vesca	FvH4_2g10220 FvH4_2g10220 FvH4_2g10220
malus_domestica	MD05G1055800.v1.1 MD10G1064300.v1.1
prunus_persica	Prupe.8G086100_v2.0.a1
pyrus_communis	pycom05g04720 pycom10g05020
rosa_chinensis	RchiOBHm_Chr6g0267451
rosa_laevigata	RLG00000014002
rosa_multiflora	Rmu_co8362579.1_g000001 Rmu_sc0007301.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200760
rosa_rugosa	Rorug06G0032800
rosa_samantha	Rh6AG154100 Rh6BG154400 Rh6CG149900 Rh6DG139600
rosa_wichuraiana	Rw6G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	6 cut(s)	233, 260, 301, 335, 384, 524
AcoI	YGGCCR	1 cut(s)	403
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	213
AgeI	ACCGGT	3 cut(s)	6, 28, 347
AgsI	TTSAA	8 cut(s)	14, 62, 174, 193, 203, 282, 397, 532
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw21I	GWGCWC	1 cut(s)	46
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	2 cut(s)	403, 425
AsiGI	ACCGGT	3 cut(s)	6, 28, 347
AspS9I	GGNCC	4 cut(s)	114, 262, 350, 359
AsuC2I	CCSGG	3 cut(s)	107, 160, 197
AsuHPI	GGTGA	3 cut(s)	126, 236, 464
AsuNHI	GCTAGC	1 cut(s)	101
AvaII	GGWCC	4 cut(s)	114, 262, 350, 359
BanII	GRGCYC	2 cut(s)	46, 519
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	46
BccI	CCATC	1 cut(s)	145
BcnI	CCSGG	3 cut(s)	107, 160, 197
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	2 cut(s)	234, 385
BlsI	GCNGC	2 cut(s)	235, 386
Bme1390I	CCNGG	3 cut(s)	107, 160, 197
Bme18I	GGWCC	4 cut(s)	114, 262, 350, 359
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	4 cut(s)	114, 262, 350, 359
BmiI	GGNNCC	2 cut(s)	21, 33
BmrFI	CCNGG	3 cut(s)	107, 160, 197
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	335
BpuMI	CCSGG	3 cut(s)	107, 160, 197
BsaHI	GRCGYC	1 cut(s)	387
BsaWI	WCCGGW	6 cut(s)	6, 16, 28, 347, 390, 415
BsaXI	ACNNNNNCTCC	4 cut(s)	295, 325, 334, 364
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	8 cut(s)	6, 28, 97, 229, 256, 347, 405, 427
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	2 cut(s)	313, 344
BseAI	TCCGGA	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	2 cut(s)	313, 344
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	2 cut(s)	109, 112
BshFI	GGCC	2 cut(s)	405, 427
BshTI	ACCGGT	3 cut(s)	6, 28, 347
BsiHKAI	GWGCWC	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	2 cut(s)	405, 427
Bsp1286I	GDGCHC	2 cut(s)	46, 519
Bsp13I	TCCGGA	1 cut(s)	415
BspACI	CCGC	6 cut(s)	233, 260, 301, 335, 384, 524
BspANI	GGCC	2 cut(s)	405, 427
BspEI	TCCGGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	21, 33
BspOI	GCTAGC	1 cut(s)	105
BsrDI	GCAATG	2 cut(s)	313, 344
BsrFI	RCCGGY	8 cut(s)	6, 28, 97, 229, 256, 347, 405, 427
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	8 cut(s)	6, 28, 97, 229, 256, 347, 405, 427
BssNI	GRCGYC	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	294, 476
Bst6I	CTCTTC	2 cut(s)	130, 491
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	5 cut(s)	103, 382, 407, 429, 515
BstDEI	CTNAG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	523
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	3 cut(s)	105, 158, 195
BstV2I	GAAGAC	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	405, 427
BtgZI	GCGATG	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	214
Cac8I	GCNNGC	5 cut(s)	103, 382, 407, 429, 515
Cfr10I	RCCGGY	8 cut(s)	6, 28, 97, 229, 256, 347, 405, 427
Cfr13I	GGNCC	4 cut(s)	114, 262, 350, 359
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	323
CspAI	ACCGGT	3 cut(s)	6, 28, 347
CviAII	CATG	3 cut(s)	129, 208, 381
CviJI	RGCY	9 cut(s)	44, 101, 105, 236, 405, 409, 427, 431, 517
CviKI_1	RGCY	9 cut(s)	44, 101, 105, 236, 405, 409, 427, 431, 517
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	2 cut(s)	130, 491
EarI	CTCTTC	2 cut(s)	130, 491
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	2 cut(s)	46, 519
Eco47I	GGWCC	4 cut(s)	114, 262, 350, 359
Eco53kI	GAGCTC	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	44
EcoT38I	GRGCYC	2 cut(s)	46, 519
FaeI	CATG	3 cut(s)	132, 211, 384
FaiI	YATR	4 cut(s)	130, 209, 382, 423
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	3 cut(s)	128, 207, 380
Fnu4HI	GCNGC	2 cut(s)	234, 385
FriOI	GRGCYC	2 cut(s)	46, 519
Fsp4HI	GCNGC	2 cut(s)	234, 385
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	2 cut(s)	234, 385
HaeIII	GGCC	2 cut(s)	405, 427
HgaI	GACGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	3 cut(s)	132, 211, 384
HinfI	GANTC	2 cut(s)	331, 541
HphI	GGTGA	3 cut(s)	126, 236, 464
Hpy166II	GTNNAC	4 cut(s)	134, 227, 353, 460
Hpy188I	TCNGA	1 cut(s)	546
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	4 cut(s)	134, 227, 353, 460
HpyCH4III	ACNGT	2 cut(s)	294, 476
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	523
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	3 cut(s)	132, 211, 384
Kpn2I	TCCGGA	1 cut(s)	415
KroI	GCCGGC	2 cut(s)	405, 427
KroNI	GCCGGC	2 cut(s)	407, 429
LmnI	GCTCC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	3 cut(s)	89, 374, 470
MboII	GAAGA	5 cut(s)	117, 147, 181, 340, 508
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	46, 519
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	7 cut(s)	127, 130, 133, 268, 297, 486, 492
MroI	TCCGGA	1 cut(s)	415
MroNI	GCCGGC	2 cut(s)	405, 427
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	2 cut(s)	301, 526
MspR9I	CCNGG	3 cut(s)	107, 160, 197
MunI	CAATTG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	523
NaeI	GCCGGC	2 cut(s)	407, 429
NciI	CCSGG	3 cut(s)	107, 160, 197
NgoMIV	GCCGGC	2 cut(s)	405, 427
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	3 cut(s)	132, 211, 384
NlaIV	GGNNCC	2 cut(s)	21, 33
NmuCI	GTSAC	1 cut(s)	470
NspI	RCATGY	1 cut(s)	384
PaeI	GCATGC	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PdiI	GCCGGC	2 cut(s)	407, 429
PfeI	GAWTC	1 cut(s)	541
PinAI	ACCGGT	3 cut(s)	6, 28, 347
PkrI	GCNGC	2 cut(s)	235, 386
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	21, 33
PspPI	GGNCC	4 cut(s)	114, 262, 350, 359
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	212
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	2 cut(s)	234, 385
Sau96I	GGNCC	4 cut(s)	114, 262, 350, 359
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	3 cut(s)	107, 160, 197
SduI	GDGCHC	2 cut(s)	46, 519
SetI	ASST	3 cut(s)	46, 216, 308
SinI	GGWCC	4 cut(s)	114, 262, 350, 359
SmiMI	CAYNNNNRTG	1 cut(s)	212
SphI	GCATGC	1 cut(s)	384
Sse9I	AATT	1 cut(s)	282
SsiI	CCGC	6 cut(s)	233, 260, 301, 335, 384, 524
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	3 cut(s)	105, 158, 195
TaaI	ACNGT	2 cut(s)	294, 476
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	464
TasI	AATT	1 cut(s)	282
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	2 cut(s)	236, 387
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	17, 117, 156
TspGWI	ACGGA	1 cut(s)	36
VpaK11BI	GGWCC	4 cut(s)	114, 262, 350, 359
XceI	RCATGY	1 cut(s)	384
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.