Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010802

Physical Location & Seq

Genomic Coordinates Forward (+)

24201182 .. 24203129

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23989

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAGCTGTGCATGGAAGCAAGGGCCTTGAAGTCGAGTTTGCTTACAGAACTGGCCTTAAAGTCGACCCAGCATGCTTTAATGGAGGAGTTTTGGGGTGCTACTGCAATTTCCGGCGTGCCCAGTGAGGATTTCTCAGTGGATGACCTTCTTGACTTCTCTAATGGCGAATTCGAAGATGGGTCCGTTGAAGAAGAACAAGAACTAGAAGAACAGGAAGAAGAAGAAGAAGACAAAGACTCTGTTTCAATGGACTCTGTTGAAAATTCCAATTCCAGCAACTTCACCGAGTCAACTCTGGCCAGCCATCTCGCCGTTCCGGATGATGATTTAGCAGAGCTTGAATGGGTTTCTCACTTTGTGGACGATTCTGTTTCGGAGCTCTCTCTTCTGGACCCAGTTATCAAGCAAAAACCGGAAGCTTTAAAAGAGAACCGGTCTGAACCGGAGGCAAGAAGACTAGCTCAGTCAAGGCTTTCATGGCTTCCCTCGCAGGTCCCGGTCAAAGCCAGAAGCAAACGTTGCAGACCAGCTGGTCGGTCTCGGTCATTGTGGAACCCACTTGGTGACTCACCGTCTCTAACGCCTTGTTTATCTTCGCCGTCGTCATCGTCTTGTTCTTCAGGGTTTTCATTGTCAACGCCTTGTCTTATATTCACCAGCCCGGTTCACAACATGGGGTTGTTTTCAGGGGAACCGGCTGCCAAGAAGCAAAAGAGAAAGCCGGCGGTTCAAACCGGTGATGAGGTCATAGTTGGGATTCAGAGGAAGTGCAGCCATTGCCAAGTTCAGAAGACCCCTCAGTGGAGAACCGGTCCACTCGGACCCAAGACGCTGTGTAATGCGTGTGGGGTTCGATACAAGTCCGGCCGGCTGTTTCCGGAGTATAGACCGGCTTGTAGTCCGACTTTTTCGGGTGATGTTCACTCGAATAGTCATCGAAAAGTTTTGGAGATGAGGAAGAGGAAAGATACCGGTGAGCCGGAACCAGGGATGAGCAAGATGATTCCGGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

339

Amino Acids

37.38

Weight (kDa)

5.16

Isoelectric Point (pI)

65.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	258 - 291	1.8e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36240
fragaria_vesca	FvH4_2g10220 FvH4_2g10220 FvH4_2g10220
malus_domestica	MD05G1055800.v1.1 MD10G1064300.v1.1
prunus_persica	Prupe.8G086100_v2.0.a1
pyrus_communis	pycom05g04720 pycom10g05020
rosa_chinensis	RchiOBHm_Chr6g0267451
rosa_laevigata	RLG00000014002
rosa_multiflora	Rmu_co8362579.1_g000001 Rmu_sc0007301.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200760
rosa_rugosa	Rorug06G0032800
rosa_samantha	Rh6AG154100 Rh6BG154400 Rh6CG149900 Rh6DG139600
rosa_wichuraiana	Rw6G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	65
AccIII	TCCGGA	2 cut(s)	319, 880
AciI	CCGC	1 cut(s)	728
AclI	AACGTT	1 cut(s)	520
AcoI	YGGCCR	2 cut(s)	300, 868
AcsI	RAATTY	2 cut(s)	170, 265
AcuI	CTGAAG	1 cut(s)	606
AdeI	CACNNNGTG	2 cut(s)	361, 566
AfiI	CCNNNNNNNGG	2 cut(s)	804, 989
AgeI	ACCGGT	4 cut(s)	435, 737, 812, 974
AgsI	TTSAA	6 cut(s)	31, 191, 249, 263, 344, 734
AhdI	GACNNNNNGTC	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	988
AluBI	AGCT	6 cut(s)	7, 340, 382, 422, 464, 533
AluI	AGCT	6 cut(s)	7, 340, 382, 422, 464, 533
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	546, 582
Aor13HI	TCCGGA	2 cut(s)	319, 880
AoxI	GGCC	4 cut(s)	24, 54, 300, 868
ApeKI	GCWGC	2 cut(s)	701, 774
ApoI	RAATTY	2 cut(s)	170, 265
AsiGI	ACCGGT	4 cut(s)	435, 737, 812, 974
AspS9I	GGNCC	6 cut(s)	24, 183, 394, 496, 815, 824
AsuC2I	CCSGG	3 cut(s)	500, 665, 1011
AsuHPI	GGTGA	7 cut(s)	277, 564, 578, 649, 752, 929, 989
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	5 cut(s)	183, 394, 496, 815, 824
BaeGI	GKGCMC	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	384
BbsI	GAAGAC	3 cut(s)	237, 463, 800
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	688, 786
BccI	CCATC	2 cut(s)	173, 315
BceAI	ACGGC	2 cut(s)	299, 586
BciT130I	CCWGG	1 cut(s)	990
BcnI	CCSGG	3 cut(s)	500, 665, 1011
BcoDI	GTCTC	2 cut(s)	546, 582
BfaI	CTAG	2 cut(s)	206, 461
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	2 cut(s)	702, 775
BlsI	GCNGC	2 cut(s)	703, 776
Bme1390I	CCNGG	4 cut(s)	500, 665, 990, 1011
Bme18I	GGWCC	5 cut(s)	183, 394, 496, 815, 824
BmeRI	GACNNNNNGTC	1 cut(s)	574
BmgT120I	GGNCC	6 cut(s)	24, 183, 394, 496, 815, 824
BmiI	GGNNCC	7 cut(s)	184, 396, 498, 557, 696, 826, 987
BmrFI	CCNGG	4 cut(s)	500, 665, 990, 1011
BmrI	ACTGGG	2 cut(s)	117, 392
BmuI	ACTGGG	2 cut(s)	117, 392
BpiI	GAAGAC	3 cut(s)	237, 463, 800
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
Bpu14I	TTCGAA	1 cut(s)	174
BpuMI	CCSGG	3 cut(s)	500, 665, 1011
BsaI	GGTCTC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	989
BsaWI	WCCGGW	8 cut(s)	319, 415, 435, 445, 737, 812, 880, 974
BsaXI	ACNNNNNCTCC	2 cut(s)	799, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	804, 989
Bse118I	RCCGGY	8 cut(s)	435, 697, 724, 737, 812, 870, 892, 974
Bse1I	ACTGG	3 cut(s)	57, 123, 398
Bse3DI	GCAATG	1 cut(s)	778
BseAI	TCCGGA	2 cut(s)	319, 880
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	1 cut(s)	989
BseGI	GGATG	3 cut(s)	148, 328, 999
BseLI	CCNNNNNNNGG	2 cut(s)	804, 989
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	3 cut(s)	150, 479, 815
BseNI	ACTGG	3 cut(s)	57, 123, 398
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	123
BseX3I	CGGCCG	1 cut(s)	868
BseXI	GCAGC	2 cut(s)	688, 786
BseYI	CCCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	793
Bsh1285I	CGRYCG	1 cut(s)	871
BshFI	GGCC	4 cut(s)	26, 56, 302, 870
BshTI	ACCGGT	4 cut(s)	435, 737, 812, 974
BsiEI	CGRYCG	1 cut(s)	871
BsiHKAI	GWGCWC	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	804, 989
BsmAI	GTCTC	2 cut(s)	546, 582
BsmBI	CGTCTC	1 cut(s)	582
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	4 cut(s)	26, 56, 302, 870
Bso31I	GGTCTC	1 cut(s)	546
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	123, 384
Bsp13I	TCCGGA	2 cut(s)	319, 880
BspACI	CCGC	1 cut(s)	728
BspANI	GGCC	4 cut(s)	26, 56, 302, 870
BspCNI	CTCAG	3 cut(s)	149, 478, 814
BspEI	TCCGGA	2 cut(s)	319, 880
BspLI	GGNNCC	7 cut(s)	184, 396, 498, 557, 696, 826, 987
BspMI	ACCTGC	1 cut(s)	484
BspT104I	TTCGAA	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	778
BsrFI	RCCGGY	8 cut(s)	435, 697, 724, 737, 812, 870, 892, 974
BsrI	ACTGG	3 cut(s)	57, 123, 398
BssAI	RCCGGY	8 cut(s)	435, 697, 724, 737, 812, 870, 892, 974
BssECI	CCNNGG	1 cut(s)	989
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	1 cut(s)	576
Bst6I	CTCTTC	2 cut(s)	393, 956
BstAPI	GCANNNNNTGC	2 cut(s)	522, 780
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	5 cut(s)	75, 119, 304, 726, 872
BstDEI	CTNAG	3 cut(s)	136, 465, 801
BstF5I	GGATG	3 cut(s)	148, 328, 999
BstMAI	GTCTC	2 cut(s)	546, 582
BstMCI	CGRYCG	1 cut(s)	871
BstMWI	GCNNNNNNNGC	4 cut(s)	481, 490, 522, 780
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	4 cut(s)	498, 663, 988, 1009
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	688, 786
BstV2I	GAAGAC	3 cut(s)	237, 463, 800
BstZI	CGGCCG	1 cut(s)	868
BsuRI	GGCC	4 cut(s)	26, 56, 302, 870
BtsCI	GGATG	3 cut(s)	148, 328, 999
BtsIMutI	CAGTG	3 cut(s)	130, 144, 809
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	5 cut(s)	75, 119, 304, 726, 872
Cfr10I	RCCGGY	8 cut(s)	435, 697, 724, 737, 812, 870, 892, 974
Cfr13I	GGNCC	6 cut(s)	24, 183, 394, 496, 815, 824
CseI	GACGC	1 cut(s)	841
CspAI	ACCGGT	4 cut(s)	435, 737, 812, 974
CviAII	CATG	4 cut(s)	13, 74, 480, 676
DdeI	CTNAG	3 cut(s)	136, 465, 801
DraI	TTTAAA	1 cut(s)	426
DraIII	CACNNNGTG	2 cut(s)	361, 566
DrdI	GACNNNNNNGTC	1 cut(s)	534
DriI	GACNNNNNGTC	1 cut(s)	574
DseDI	GACNNNNNNGTC	1 cut(s)	534
EaeI	YGGCCR	2 cut(s)	300, 868
EagI	CGGCCG	1 cut(s)	868
Eam1104I	CTCTTC	2 cut(s)	393, 956
Eam1105I	GACNNNNNGTC	1 cut(s)	574
EarI	CTCTTC	2 cut(s)	393, 956
Ecl136II	GAGCTC	1 cut(s)	382
EclXI	CGGCCG	1 cut(s)	868
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	546
Eco47I	GGWCC	5 cut(s)	183, 394, 496, 815, 824
Eco52I	CGGCCG	1 cut(s)	868
Eco53kI	GAGCTC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	382
EcoO109I	RGGNCCY	2 cut(s)	24, 496
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	988
EcoT38I	GRGCYC	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	582
FaeI	CATG	4 cut(s)	16, 77, 483, 679
FaiI	YATR	7 cut(s)	14, 75, 481, 653, 677, 752, 888
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	4 cut(s)	12, 73, 479, 675
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	702, 775
FokI	GGATG	3 cut(s)	155, 335, 1006
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	702, 775
FspBI	CTAG	2 cut(s)	206, 461
GluI	GCNGC	2 cut(s)	702, 775
GsaI	CCCAGC	1 cut(s)	73
HaeIII	GGCC	4 cut(s)	26, 56, 302, 870
HgaI	GACGC	1 cut(s)	841
Hin1II	CATG	4 cut(s)	16, 77, 483, 679
HincII	GTYRAC	3 cut(s)	66, 294, 639
HindII	GTYRAC	3 cut(s)	66, 294, 639
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	7 cut(s)	239, 254, 290, 368, 569, 760, 1006
HphI	GGTGA	7 cut(s)	277, 564, 578, 649, 752, 929, 989
Hpy166II	GTNNAC	7 cut(s)	66, 294, 364, 639, 670, 818, 925
Hpy188I	TCNGA	6 cut(s)	379, 442, 765, 792, 824, 906
Hpy188III	TCNNGA	4 cut(s)	152, 320, 392, 881
Hpy8I	GTNNAC	7 cut(s)	66, 294, 364, 639, 670, 818, 925
Hpy99I	CGWCG	1 cut(s)	607
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4IV	ACGT	1 cut(s)	520
HpyCH4V	TGCA	4 cut(s)	12, 107, 525, 774
HpyF10VI	GCNNNNNNNGC	4 cut(s)	481, 490, 522, 780
HpyF3I	CTNAG	3 cut(s)	136, 465, 801
HpySE526I	ACGT	1 cut(s)	520
Hsp92II	CATG	4 cut(s)	16, 77, 483, 679
Kpn2I	TCCGGA	2 cut(s)	319, 880
KroI	GCCGGC	2 cut(s)	724, 870
KroNI	GCCGGC	2 cut(s)	726, 872
LmnI	GCTCC	2 cut(s)	4, 379
Lsp1109I	GCAGC	2 cut(s)	688, 786
MaeI	CTAG	2 cut(s)	206, 461
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	1 cut(s)	566
MhlI	GDGCHC	2 cut(s)	123, 384
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	4 cut(s)	108, 170, 265, 271
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	4 cut(s)	233, 248, 299, 563
MmeI	TCCRAC	1 cut(s)	929
MnlI	CCTC	9 cut(s)	79, 121, 442, 499, 739, 759, 810, 951, 957
Mox20I	TGGCCA	1 cut(s)	302
MroI	TCCGGA	2 cut(s)	319, 880
MroNI	GCCGGC	2 cut(s)	724, 870
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	3 cut(s)	59, 80, 425
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	533
MspR9I	CCNGG	4 cut(s)	500, 665, 990, 1011
MvaI	CCWGG	1 cut(s)	990
MwoI	GCNNNNNNNGC	4 cut(s)	481, 490, 522, 780
NaeI	GCCGGC	2 cut(s)	726, 872
NciI	CCSGG	3 cut(s)	500, 665, 1011
NgoMIV	GCCGGC	2 cut(s)	724, 870
NlaIII	CATG	4 cut(s)	16, 77, 483, 679
NlaIV	GGNNCC	7 cut(s)	184, 396, 498, 557, 696, 826, 987
NmuCI	GTSAC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	174
PaeI	GCATGC	1 cut(s)	77
PdiI	GCCGGC	2 cut(s)	726, 872
PfeI	GAWTC	3 cut(s)	368, 760, 1006
PinAI	ACCGGT	4 cut(s)	435, 737, 812, 974
PkrI	GCNGC	2 cut(s)	703, 776
PleI	GAGTC	4 cut(s)	233, 248, 298, 563
PpsI	GAGTC	4 cut(s)	233, 248, 298, 563
PpuMI	RGGWCCY	1 cut(s)	496
Psp124BI	GAGCTC	1 cut(s)	384
Psp1406I	AACGTT	1 cut(s)	520
Psp5II	RGGWCCY	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	988
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	988
PspN4I	GGNNCC	7 cut(s)	184, 396, 498, 557, 696, 826, 987
PspPI	GGNCC	6 cut(s)	24, 183, 394, 496, 815, 824
PspPPI	RGGWCCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	384
SalI	GTCGAC	1 cut(s)	64
SaqAI	TTAA	3 cut(s)	59, 80, 425
SatI	GCNGC	2 cut(s)	702, 775
Sau96I	GGNCC	6 cut(s)	24, 183, 394, 496, 815, 824
SchI	GAGTC	4 cut(s)	233, 248, 299, 563
ScrFI	CCNGG	4 cut(s)	500, 665, 990, 1011
SduI	GDGCHC	2 cut(s)	123, 384
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	5 cut(s)	183, 394, 496, 815, 824
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	4 cut(s)	108, 170, 265, 271
SsiI	CCGC	1 cut(s)	728
SspMI	CTAG	2 cut(s)	206, 461
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	4 cut(s)	498, 663, 988, 1009
TaaI	ACNGT	1 cut(s)	576
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	6 cut(s)	35, 65, 174, 856, 929, 940
TaqII	GACCGA	2 cut(s)	528, 534
TasI	AATT	4 cut(s)	108, 170, 265, 271
TfiI	GAWTC	3 cut(s)	368, 760, 1006
Tru1I	TTAA	3 cut(s)	59, 80, 425
Tru9I	TTAA	3 cut(s)	59, 80, 425
TscAI	CASTG	3 cut(s)	130, 144, 809
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	2 cut(s)	701, 774
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	2 cut(s)	468, 621
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	3 cut(s)	130, 144, 809
VpaK11BI	GGWCC	5 cut(s)	183, 394, 496, 815, 824
XapI	RAATTY	2 cut(s)	170, 265
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	2 cut(s)	206, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.