AT4G36480

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004129
Physical Location & Seq
Forward (+)
17217909 .. 17221625
3717 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36480.3

Sequence Viewer

Length: 1449 bp
ATGGCTTCGAATCTCGTGGAAATGTTTAATGCTGCTTTGAATTGGGTTACTATGATTCTGGAGAGTCCTTCAGCTAGAGTTGTCTTGTTTGGTGTCCCAATCCGAGGGCACTTCTTTGTGGAAGGGTTGTTGGGTGTTGTCATTATCATTCTCCTCACTCGGAAGAGTTATAAACCTCCCAAGCGACCATTGACCGAGCAGGAAATAGATGAGTTGTGTGATGAGTGGGTTCCTGAACCTCTTATACCGCCAATTACTGAAGACATGAAGCATGAGCCACCAGTTCTTGAAAGTGCTGCTGGACCGCATACAACAGTTAATGGAAAAGATGTGGTGAATTTTGCCTCAGCTAATTATCTTGGGCTCATTGGCCACGAGAAGTTGCTGGAATCATGTACTTCTGCATTAGAAAAATATGGGGTCGGTTCTTGTGGGCCTCGTGGATTCTATGGTACAATTGATGTCCACCTTGACTGCGAAACCAGAATATCCAAATTTTTGGGTACTCCTGATTCAATCCTTTACTCTTATGGACTTTCCACAATGTTCAGCACAATTCCTTGTTTCTGTAAGAAAGGCGATGTCATTGTTGCTGATGAGGGTGTTCACTGGGGAATACAAAATGGACTTCAGCTTTCAAGAAGTACAATTGTGTACTTCAAGCACAATGACATGGAATCCCTTCGAATTACCCTTGAGAAAATCATGACAAAGTACAAGCGCTCAAAGAACTTGAGGCGTTATATTGTAGCTGAAGCTGTATATCAAAATTCAGGTCAAATTGCGCCTCTGGATGAGATTGTAAAACTAAAAGAGAAGTATCGGTTTCGTGTTATATTGGATGAAAGCAACTCTTTTGGTGTGCTTGGCCGTTCTGGGAGAGGTCTTGCAGAGCATCATAGTGTCCCTATTGAGAAGATAGATGTTGTGACTGCTGCAATGGGCCATGCATTAGCCACAGAAGGTGGATTTTGCACTGGGAATGCCCGCATCATCGATTACCAGAGACTTAGCAGTTCAGGATATGTGTTCTCTGCTTCTTTACCACCATACCTTGCAAGTGCTGCTATCACCGCCATTGATGTCATTGATCAAAACCCTGATATGTTAGTTAAGCTGAAGCAAAATGTTGCTCTGTTATGGAAAGGATTGTCAGATATCAAGGGGATGTCATTAACAAGCAACCGGGAATCACCTATTGTTTTCTTAAAATTAGAGAAATCTAGCGGTTCAGCTAAAGATGATTTGCTTCTACTTGAGAAAATGGCTGACCGTGCTCTGAAGGAAGACTCATTGTTGGTTGTGAGTTCTAAAAGATCATTTCTTGATAAATGCCGGTTACCTGTGGGAATCAAACTCTACGTCTCAGCGGGACATTCGGAATCCGATCTTCTTAAAGCGTCGGAGTCACTGAAGAGACTTGCTTCAGAGCTTCTACTCAAGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

482

Amino Acids

53.14

Weight (kDa)

7.15

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 109 - 338 2.1e-25 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AciI CCGC 6 cut(s) 248, 305, 988, 1074, 1227, 1370
AcoI YGGCCR 2 cut(s) 370, 868
AcsI RAATTY 3 cut(s) 337, 494, 769
AcuI CTGAAG 8 cut(s) 54, 279, 614, 774, 1139, 1301, 1410, 1433
AfaI GTAC 6 cut(s) 397, 454, 505, 646, 656, 716
AfeI AGCGCT 1 cut(s) 722
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 5 cut(s) 40, 290, 516, 639, 661
AluBI AGCT 8 cut(s) 74, 350, 634, 752, 758, 1117, 1235, 1432
AluI AGCT 8 cut(s) 74, 350, 634, 752, 758, 1117, 1235, 1432
Alw21I GWGCWC 1 cut(s) 1279
Alw26I GTCTC 3 cut(s) 1000, 1369, 1411
Aor51HI AGCGCT 1 cut(s) 722
AoxI GGCC 4 cut(s) 370, 434, 868, 943
ApeKI GCWGC 4 cut(s) 32, 296, 935, 1064
ApoI RAATTY 3 cut(s) 337, 494, 769
ArsI GACNNNNNNTTYG 4 cut(s) 760, 792, 1347, 1379
Asp700I GAANNNNTTC 1 cut(s) 681
AspLEI GCGC 2 cut(s) 723, 787
AspS9I GGNCC 3 cut(s) 302, 434, 943
AsuC2I CCSGG 1 cut(s) 1187
AsuHPI GGTGA 3 cut(s) 346, 1063, 1185
AsuII TTCGAA 2 cut(s) 8, 685
AvaII GGWCC 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 111
BalI TGGCCA 1 cut(s) 372
BanII GRGCYC 1 cut(s) 366
BauI CACGAG 3 cut(s) 14, 374, 438
BbsI GAAGAC 2 cut(s) 267, 1293
Bbv12I GWGCWC 1 cut(s) 1279
BbvCI CCTCAGC 1 cut(s) 346
BbvI GCAGC 4 cut(s) 19, 283, 922, 1051
BceAI ACGGC 1 cut(s) 855
BclI TGATCA 1 cut(s) 1090
BcnI CCSGG 1 cut(s) 1187
BcoDI GTCTC 3 cut(s) 1000, 1369, 1411
BfaI CTAG 2 cut(s) 75, 1224
BfoI RGCGCY 1 cut(s) 724
BisI GCNGC 4 cut(s) 33, 297, 936, 1065
BlsI GCNGC 4 cut(s) 34, 298, 937, 1066
Bme1390I CCNGG 1 cut(s) 1187
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 3 cut(s) 302, 434, 943
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 1187
BmrI ACTGGG 2 cut(s) 619, 987
BmsI GCATC 2 cut(s) 904, 999
BmuI ACTGGG 2 cut(s) 619, 987
BpiI GAAGAC 2 cut(s) 267, 1293
BpmI CTGGAG 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 346
Bpu14I TTCGAA 2 cut(s) 8, 685
BpuEI CTTGAG 4 cut(s) 716, 754, 1277, 1424
BpuMI CCSGG 1 cut(s) 1187
Bsa29I ATCGAT 1 cut(s) 996
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse118I RCCGGY 1 cut(s) 1335
Bse1I ACTGG 3 cut(s) 281, 614, 982
Bse3DI GCAATG 1 cut(s) 945
BseCI ATCGAT 1 cut(s) 996
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 3 cut(s) 799, 847, 1173
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMI GCAATG 1 cut(s) 945
BseMII CTCAG 2 cut(s) 360, 1380
BseNI ACTGG 3 cut(s) 281, 614, 982
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 4 cut(s) 19, 283, 922, 1051
BshFI GGCC 4 cut(s) 372, 436, 870, 945
BshVI ATCGAT 1 cut(s) 996
BsiHKAI GWGCWC 1 cut(s) 1279
BsiSI CCGG 2 cut(s) 1186, 1336
BslFI GGGAC 3 cut(s) 80, 890, 1386
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 3 cut(s) 1000, 1369, 1411
BsmBI CGTCTC 1 cut(s) 1369
BsmFI GGGAC 3 cut(s) 80, 890, 1386
BsmI GAATGC 1 cut(s) 988
BsnI GGCC 4 cut(s) 372, 436, 870, 945
Bsp119I TTCGAA 2 cut(s) 8, 685
Bsp1286I GDGCHC 3 cut(s) 111, 366, 1279
Bsp143I GATC 3 cut(s) 1090, 1316, 1387
BspACI CCGC 6 cut(s) 248, 305, 988, 1074, 1227, 1370
BspANI GGCC 4 cut(s) 372, 436, 870, 945
BspCNI CTCAG 2 cut(s) 359, 1379
BspDI ATCGAT 1 cut(s) 996
BspHI TCATGA 1 cut(s) 705
BspLI GGNNCC 1 cut(s) 231
BspT104I TTCGAA 2 cut(s) 8, 685
BsrDI GCAATG 1 cut(s) 945
BsrFI RCCGGY 1 cut(s) 1335
BsrI ACTGG 3 cut(s) 281, 614, 982
BssAI RCCGGY 1 cut(s) 1335
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 3 cut(s) 1090, 1316, 1387
BssSI CACGAG 3 cut(s) 14, 374, 438
Bst2BI CACGAG 3 cut(s) 14, 374, 438
Bst4CI ACNGT 2 cut(s) 316, 1274
Bst6I CTCTTC 2 cut(s) 158, 1409
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstBI TTCGAA 2 cut(s) 8, 685
BstC8I GCNNGC 1 cut(s) 988
BstDEI CTNAG 3 cut(s) 346, 1010, 1366
BstEII GGTNACC 1 cut(s) 1338
BstF5I GGATG 3 cut(s) 799, 847, 1173
BstH2I RGCGCY 1 cut(s) 724
BstHHI GCGC 2 cut(s) 723, 787
BstKTI GATC 3 cut(s) 1093, 1319, 1390
BstMAI GTCTC 3 cut(s) 1000, 1369, 1411
BstMBI GATC 3 cut(s) 1090, 1316, 1387
BstMWI GCNNNNNNNGC 3 cut(s) 1064, 1073, 1274
BstPI GGTNACC 1 cut(s) 1338
BstSCI CCNGG 1 cut(s) 1185
BstSLI GKGCMC 1 cut(s) 111
BstV1I GCAGC 4 cut(s) 19, 283, 922, 1051
BstV2I GAAGAC 2 cut(s) 267, 1293
BstXI CCANNNNNNTGG 1 cut(s) 499
Bsu15I ATCGAT 1 cut(s) 996
BsuRI GGCC 4 cut(s) 372, 436, 870, 945
BsuTUI ATCGAT 1 cut(s) 996
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 3 cut(s) 799, 847, 1173
BtsIMutI CAGTG 3 cut(s) 607, 975, 1409
Cac8I GCNNGC 1 cut(s) 988
CciI TCATGA 1 cut(s) 705
CfoI GCGC 2 cut(s) 723, 787
Cfr10I RCCGGY 1 cut(s) 1335
Cfr13I GGNCC 3 cut(s) 302, 434, 943
ClaI ATCGAT 1 cut(s) 996
CseI GACGC 1 cut(s) 1389
Csp6I GTAC 6 cut(s) 396, 453, 504, 645, 655, 715
CviAII CATG 6 cut(s) 265, 272, 393, 673, 706, 947
CviQI GTAC 6 cut(s) 396, 453, 504, 645, 655, 715
DdeI CTNAG 3 cut(s) 346, 1010, 1366
DpnI GATC 3 cut(s) 1092, 1318, 1389
DpnII GATC 3 cut(s) 1090, 1316, 1387
EaeI YGGCCR 2 cut(s) 370, 868
Eam1104I CTCTTC 2 cut(s) 158, 1409
EarI CTCTTC 2 cut(s) 158, 1409
Eco24I GRGCYC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 1159
Eco47I GGWCC 1 cut(s) 302
Eco47III AGCGCT 1 cut(s) 722
Eco57I CTGAAG 8 cut(s) 54, 279, 614, 774, 1139, 1301, 1410, 1433
Eco91I GGTNACC 1 cut(s) 1338
EcoO65I GGTNACC 1 cut(s) 1338
EcoRV GATATC 1 cut(s) 1159
EcoT22I ATGCAT 1 cut(s) 952
EcoT38I GRGCYC 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 1369
FaeI CATG 6 cut(s) 268, 275, 396, 676, 709, 950
FalI AAGNNNNNCTT 2 cut(s) 838, 870
FaqI GGGAC 3 cut(s) 80, 890, 1386
FatI CATG 6 cut(s) 264, 271, 392, 672, 705, 946
FauI CCCGC 2 cut(s) 995, 1363
FbaI TGATCA 1 cut(s) 1090
Fnu4HI GCNGC 4 cut(s) 33, 297, 936, 1065
FokI GGATG 3 cut(s) 806, 854, 1180
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 4 cut(s) 33, 297, 936, 1065
FspBI CTAG 2 cut(s) 75, 1224
GlaI GCGC 2 cut(s) 722, 786
GluI GCNGC 4 cut(s) 33, 297, 936, 1065
GsuI CTGGAG 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 724
HaeIII GGCC 4 cut(s) 372, 436, 870, 945
HapII CCGG 2 cut(s) 1186, 1336
HgaI GACGC 1 cut(s) 1389
HhaI GCGC 2 cut(s) 723, 787
Hin1II CATG 6 cut(s) 268, 275, 396, 676, 709, 950
Hin6I GCGC 2 cut(s) 721, 785
HinP1I GCGC 2 cut(s) 721, 785
HpaII CCGG 2 cut(s) 1186, 1336
HphI GGTGA 3 cut(s) 346, 1063, 1185
Hpy166II GTNNAC 3 cut(s) 466, 607, 655
Hpy188I TCNGA 8 cut(s) 104, 162, 1156, 1281, 1381, 1387, 1405, 1429
Hpy8I GTNNAC 3 cut(s) 466, 607, 655
Hpy99I CGWCG 1 cut(s) 1405
HpyAV CCTTC 5 cut(s) 78, 116, 692, 956, 1276
HpyCH4III ACNGT 2 cut(s) 316, 1274
HpyCH4IV ACGT 1 cut(s) 1362
HpyCH4V TGCA 6 cut(s) 404, 890, 938, 950, 975, 1058
HpyF10VI GCNNNNNNNGC 3 cut(s) 1064, 1073, 1274
HpyF3I CTNAG 3 cut(s) 346, 1010, 1366
HpySE526I ACGT 1 cut(s) 1362
Hsp92II CATG 6 cut(s) 268, 275, 396, 676, 709, 950
HspAI GCGC 2 cut(s) 721, 785
Ksp22I TGATCA 1 cut(s) 1090
Kzo9I GATC 3 cut(s) 1090, 1316, 1387
Lsp1109I GCAGC 4 cut(s) 19, 283, 922, 1051
LweI GCATC 2 cut(s) 904, 999
MaeI CTAG 2 cut(s) 75, 1224
MaeII ACGT 1 cut(s) 1362
MaeIII GTNAC 4 cut(s) 46, 928, 1338, 1407
MalI GATC 3 cut(s) 1092, 1318, 1389
MboI GATC 3 cut(s) 1090, 1316, 1387
MboII GAAGA 6 cut(s) 175, 272, 928, 1298, 1382, 1426
MfeI CAATTG 2 cut(s) 456, 648
MhlI GDGCHC 3 cut(s) 111, 366, 1279
MlsI TGGCCA 1 cut(s) 372
MluNI TGGCCA 1 cut(s) 372
MlyI GAGTC 3 cut(s) 73, 1283, 1415
MmeI TCCRAC 1 cut(s) 1383
Mox20I TGGCCA 1 cut(s) 372
Mph1103I ATGCAT 1 cut(s) 952
MroXI GAANNNNTTC 1 cut(s) 681
MscI TGGCCA 1 cut(s) 372
MseI TTAA 6 cut(s) 27, 318, 1113, 1175, 1208, 1395
MslI CAYNNNNRTG 1 cut(s) 900
Msp20I TGGCCA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 1370
MspI CCGG 2 cut(s) 1186, 1336
MspR9I CCNGG 1 cut(s) 1187
MunI CAATTG 2 cut(s) 456, 648
Mva1269I GAATGC 1 cut(s) 988
MwoI GCNNNNNNNGC 3 cut(s) 1064, 1073, 1274
NciI CCSGG 1 cut(s) 1187
NdeII GATC 3 cut(s) 1090, 1316, 1387
NlaIII CATG 6 cut(s) 268, 275, 396, 676, 709, 950
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 2 cut(s) 928, 1407
NsiI ATGCAT 1 cut(s) 952
NspV TTCGAA 2 cut(s) 8, 685
PagI TCATGA 1 cut(s) 705
PctI GAATGC 1 cut(s) 988
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 9 cut(s) 10, 55, 389, 444, 512, 677, 1190, 1350, 1382
PkrI GCNGC 4 cut(s) 34, 298, 937, 1066
PleI GAGTC 3 cut(s) 72, 1283, 1414
PpsI GAGTC 3 cut(s) 72, 1283, 1414
PsiI TTATAA 1 cut(s) 171
PspEI GGTNACC 1 cut(s) 1338
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 3 cut(s) 302, 434, 943
PsrI GAACNNNNNNTAC 2 cut(s) 228, 260
RsaI GTAC 6 cut(s) 397, 454, 505, 646, 656, 716
RsaNI GTAC 6 cut(s) 396, 453, 504, 645, 655, 715
RseI CAYNNNNRTG 1 cut(s) 900
SaqAI TTAA 6 cut(s) 27, 318, 1113, 1175, 1208, 1395
SatI GCNGC 4 cut(s) 33, 297, 936, 1065
Sau3AI GATC 3 cut(s) 1090, 1316, 1387
Sau96I GGNCC 3 cut(s) 302, 434, 943
SchI GAGTC 3 cut(s) 73, 1283, 1415
ScrFI CCNGG 1 cut(s) 1187
SduI GDGCHC 3 cut(s) 111, 366, 1279
SfaNI GCATC 2 cut(s) 904, 999
SfuI TTCGAA 2 cut(s) 8, 685
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 4 cut(s) 695, 733, 1256, 1439
SmoI CTYRAG 4 cut(s) 695, 733, 1256, 1439
SsiI CCGC 6 cut(s) 248, 305, 988, 1074, 1227, 1370
SspMI CTAG 2 cut(s) 75, 1224
StyD4I CCNGG 1 cut(s) 1185
TaaI ACNGT 2 cut(s) 316, 1274
TaiI ACGT 1 cut(s) 1365
TaqI TCGA 3 cut(s) 8, 685, 996
TaqII GACCGA 1 cut(s) 209
TatI WGTACW 4 cut(s) 395, 644, 654, 714
TfiI GAWTC 9 cut(s) 10, 55, 389, 444, 512, 677, 1190, 1350, 1382
Tru1I TTAA 6 cut(s) 27, 318, 1113, 1175, 1208, 1395
Tru9I TTAA 6 cut(s) 27, 318, 1113, 1175, 1208, 1395
TscAI CASTG 3 cut(s) 614, 982, 1416
TseFI GTSAC 2 cut(s) 928, 1407
TseI GCWGC 4 cut(s) 32, 296, 935, 1064
Tsp45I GTSAC 2 cut(s) 928, 1407
TspDTI ATGAA 2 cut(s) 281, 858
TspRI CASTG 3 cut(s) 614, 982, 1416
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 3 cut(s) 337, 494, 769
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 2 cut(s) 75, 1224
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.