pycom08g07730

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
6236441 .. 6241441
5001 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g07730.2

Sequence Viewer

Length: 1509 bp
ATGTCATCAAGTATTCTGAACATAGTGAATGCTACTGTAGATTGGGTGACGGCAACTTTAGATGCTCCCTCTTCTCGAGCTGTTATTTTCGGATTTCCAATTGGCGGACATTTATTTGTAGAAGTTCTGCTTTTCTTAGTCATCGTTTATTTATTTTCCCAGAACAGTTACAGACCGCCTAGGCGGCCTTTAACAGAGCAGGAAAAAGATGAGCTATGTGAGGAATGGGTTCCTGAACCTCTTATTCCTTCTATCACTGAAGAGAAGCTGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACATACAATAATCAATGGTAAAGAAGTCGTGAACTTTGCTTCAGCAAATTATCTGGGATTGATAGGACATGAGAAGTTACTTGAGTCATGTACCTCTGCATTGGAAAAATATGGTGTTGGTTCATGTGGTCCTCGTGGGTTTTATGGAACAATTGATGTCCACCTTGATTGTGAGGCGAGAATAGCAAACTTCTTGGGAACTCCGGACTCAATTCTATATTCTTATGGACTGTCTACCATGTTCAGTGCAATTCCAGCATTTGCCAAGAAAGGGGATATTATTGTTGTAGATGAAGGTGTCCATTGGGGAATACAAAATGGTCTTCATCTTTCTAGGAGTACAATCAAGTATTTCAAGCACAATGACATGGAAGATTTAAGGAAAATTCTGGAGGAACTCACTTCAAATAAGAAAAGTGAGCGAGTTAAGAAATTGCGGCGCTACATTGTAGTTGAAGCTGTATACCAGAATTCTGGCCAAATAGCCCCCTTGGACAAGATTGTTGAATTGAAGGAGAAATATAAGTTTCGTGTTTTATTGGATGAGAGTAACTCGTTTGGCGTGCTTGGAAAATCCGGAAGAGGTCTCACTGAATACTGTAGGATTCCGGTTGAAAAAATAGATATTATTACTGCTGCAATGGGACACGCATTAGCCACAGAAGGAGGATTCTGCACTGGAAGTGCTAGGGTCACTGATCACCAACGATTGAGTAGCTCTGGTTACGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCGAGTGCTGCCATTACTGCTATTGATATCCTCGAGGAAAACCCTGATCTGATAACGAAGCTGAAGAAAAACATTGCCGTATTATGGAAGGGATTGTCAGGTATACGGGGCCTCTCATTTGCGAGCAGTCCAGAATCACCAATTGTCTTCCTCAGACTAGAGAAAGCAGACTCTTTGAAGAATGAACTGCAACTCCAGCTCCTTCAAAATATTGCTGACAGTTTGTTAAAGGAGCATTCCATTTTCGTGGTCACCTCCCAAAAGTCAACACTTGATAAATGCCGTCTTCCATTAGGAATTAGATTGTTCGTCTCCGCTGGGCATACAGAATCCGATCTGCTCAAGGCAGCTGCATCACTGAAAAGCGTTGCAGAATTGGTACTGAAGGATCGATATTTGACTGGTGGATCCCAGAATTCTCTCGCTCTCGCATCCACATGGACATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

503

Amino Acids

55.15

Weight (kDa)

6.3

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1094
AccI GTMKAC 3 cut(s) 539, 768, 1165
AccIII TCCGGA 2 cut(s) 508, 881
AciI CCGC 5 cut(s) 105, 176, 184, 742, 1377
AclWI GGATC 3 cut(s) 1458, 1464, 1477
AcoI YGGCCR 1 cut(s) 781
AcsI RAATTY 3 cut(s) 690, 775, 1477
AcuI CTGAAG 4 cut(s) 279, 330, 1145, 1466
AfaI GTAC 3 cut(s) 397, 646, 1443
AfiI CCNNNNNNNGG 4 cut(s) 104, 286, 576, 1146
AgsI TTSAA 8 cut(s) 661, 711, 761, 812, 817, 920, 1240, 1268
AloI GAACNNNNNNTCC 2 cut(s) 1239, 1271
AluBI AGCT 8 cut(s) 80, 214, 268, 764, 1023, 1123, 1261, 1412
AluI AGCT 8 cut(s) 80, 214, 268, 764, 1023, 1123, 1261, 1412
Alw26I GTCTC 2 cut(s) 896, 1378
AlwI GGATC 3 cut(s) 1458, 1464, 1477
Ama87I CYCGRG 2 cut(s) 75, 1094
Aor13HI TCCGGA 2 cut(s) 508, 881
AoxI GGCC 4 cut(s) 185, 302, 781, 1171
ApeKI GCWGC 5 cut(s) 296, 941, 1070, 1409, 1412
ApoI RAATTY 3 cut(s) 690, 775, 1477
Asp700I GAANNNNTTC 1 cut(s) 228
AspA2I CCTAGG 1 cut(s) 179
AspLEI GCGC 1 cut(s) 747
AspS9I GGNCC 3 cut(s) 302, 434, 1171
AsuHPI GGTGA 4 cut(s) 58, 998, 1191, 1306
AvaI CYCGRG 2 cut(s) 75, 1094
AvaII GGWCC 1 cut(s) 434
AvrII CCTAGG 1 cut(s) 179
BalI TGGCCA 1 cut(s) 783
BamHI GGATCC 1 cut(s) 1469
BauI CACGAG 1 cut(s) 438
BbsI GAAGAC 3 cut(s) 620, 1201, 1340
BbvI GCAGC 5 cut(s) 283, 928, 1057, 1399, 1421
BceAI ACGGC 3 cut(s) 66, 1124, 1329
BclI TGATCA 1 cut(s) 1003
BcoDI GTCTC 2 cut(s) 896, 1378
BfaI CTAG 4 cut(s) 180, 639, 993, 1220
BfmI CTRYAG 3 cut(s) 36, 297, 904
BfoI RGCGCY 1 cut(s) 748
BglI GCCNNNNNGGC 1 cut(s) 184
BisI GCNGC 7 cut(s) 185, 297, 743, 942, 1071, 1410, 1413
BlnI CCTAGG 1 cut(s) 179
BlsI GCNGC 7 cut(s) 186, 298, 744, 943, 1072, 1411, 1414
Bme18I GGWCC 1 cut(s) 434
BmeT110I CYCGRG 2 cut(s) 75, 1094
BmgT120I GGNCC 3 cut(s) 302, 434, 1171
BmiI GGNNCC 3 cut(s) 231, 1172, 1471
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 3 cut(s) 52, 1424, 1502
BmuI ACTGGG 1 cut(s) 275
BpiI GAAGAC 3 cut(s) 620, 1201, 1340
BplI GAGNNNNNCTC 2 cut(s) 842, 874
BpmI CTGGAG 2 cut(s) 716, 1241
BpuEI CTTGAG 2 cut(s) 407, 1388
Bsa29I ATCGAT 1 cut(s) 1453
BsaI GGTCTC 1 cut(s) 896
BsaJI CCNNGG 2 cut(s) 179, 795
BsaWI WCCGGW 3 cut(s) 508, 881, 913
BsaXI ACNNNNNCTCC 4 cut(s) 1239, 1245, 1269, 1275
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 286, 576, 1146
Bse1I ACTGG 3 cut(s) 281, 988, 1468
Bse3DI GCAATG 2 cut(s) 951, 1134
BseAI TCCGGA 2 cut(s) 508, 881
BseCI ATCGAT 1 cut(s) 1453
BseDI CCNNGG 2 cut(s) 179, 795
BseGI GGATG 2 cut(s) 853, 1493
BseLI CCNNNNNNNGG 4 cut(s) 104, 286, 576, 1146
BseMI GCAATG 2 cut(s) 951, 1134
BseMII CTCAG 1 cut(s) 1228
BseNI ACTGG 3 cut(s) 281, 988, 1468
BseXI GCAGC 5 cut(s) 283, 928, 1057, 1399, 1421
BseYI CCCAGC 1 cut(s) 1379
BsgI GTGCAG 1 cut(s) 964
BshFI GGCC 4 cut(s) 187, 304, 783, 1173
BshVI ATCGAT 1 cut(s) 1453
BsiHKCI CYCGRG 2 cut(s) 75, 1094
BsiSI CCGG 3 cut(s) 509, 882, 914
BslFI GGGAC 1 cut(s) 963
BslI CCNNNNNNNGG 4 cut(s) 104, 286, 576, 1146
BsmAI GTCTC 2 cut(s) 896, 1378
BsmBI CGTCTC 1 cut(s) 1378
BsmFI GGGAC 1 cut(s) 963
BsmI GAATGC 2 cut(s) 34, 1297
BsnI GGCC 4 cut(s) 187, 304, 783, 1173
Bso31I GGTCTC 1 cut(s) 896
BsoBI CYCGRG 2 cut(s) 75, 1094
Bsp13I TCCGGA 2 cut(s) 508, 881
Bsp143I GATC 5 cut(s) 1003, 1108, 1396, 1450, 1469
BspACI CCGC 5 cut(s) 105, 176, 184, 742, 1377
BspANI GGCC 4 cut(s) 187, 304, 783, 1173
BspCNI CTCAG 1 cut(s) 1227
BspDI ATCGAT 1 cut(s) 1453
BspEI TCCGGA 2 cut(s) 508, 881
BspLI GGNNCC 3 cut(s) 231, 1172, 1471
BspMAI CTGCAG 1 cut(s) 301
BspPI GGATC 3 cut(s) 1458, 1464, 1477
BspTNI GGTCTC 1 cut(s) 896
BsrDI GCAATG 2 cut(s) 951, 1134
BsrI ACTGG 3 cut(s) 281, 988, 1468
BssECI CCNNGG 2 cut(s) 179, 795
BssMI GATC 5 cut(s) 1003, 1108, 1396, 1450, 1469
BssNAI GTATAC 2 cut(s) 769, 1166
BssSI CACGAG 1 cut(s) 438
BssT1I CCWWGG 2 cut(s) 179, 795
Bst1107I GTATAC 2 cut(s) 769, 1166
Bst2BI CACGAG 1 cut(s) 438
Bst4CI ACNGT 5 cut(s) 37, 167, 537, 905, 1283
Bst6I CTCTTC 3 cut(s) 76, 255, 880
BstC8I GCNNGC 2 cut(s) 869, 1186
BstDEI CTNAG 2 cut(s) 136, 1214
BstEII GGTNACC 1 cut(s) 1312
BstF5I GGATG 2 cut(s) 853, 1493
BstH2I RGCGCY 1 cut(s) 748
BstHHI GCGC 1 cut(s) 747
BstKTI GATC 5 cut(s) 1006, 1111, 1399, 1453, 1472
BstMAI GTCTC 2 cut(s) 896, 1378
BstMBI GATC 5 cut(s) 1003, 1108, 1396, 1450, 1469
BstMWI GCNNNNNNNGC 6 cut(s) 184, 488, 560, 1070, 1079, 1258
BstPI GGTNACC 1 cut(s) 1312
BstSFI CTRYAG 3 cut(s) 36, 297, 904
BstV1I GCAGC 5 cut(s) 283, 928, 1057, 1399, 1421
BstV2I GAAGAC 3 cut(s) 620, 1201, 1340
BstX2I RGATCY 1 cut(s) 1469
BstXI CCANNNNNNTGG 2 cut(s) 779, 1309
BstYI RGATCY 1 cut(s) 1469
BstZ17I GTATAC 2 cut(s) 769, 1166
Bsu15I ATCGAT 1 cut(s) 1453
BsuRI GGCC 4 cut(s) 187, 304, 783, 1173
BsuTUI ATCGAT 1 cut(s) 1453
BtsCI GGATG 2 cut(s) 853, 1493
BtsIMutI CAGTG 7 cut(s) 255, 288, 556, 894, 981, 999, 1418
Cac8I GCNNGC 2 cut(s) 869, 1186
CfoI GCGC 1 cut(s) 747
Cfr13I GGNCC 3 cut(s) 302, 434, 1171
ClaI ATCGAT 1 cut(s) 1453
Csp6I GTAC 3 cut(s) 396, 645, 1442
CspCI CAANNNNNGTGG 2 cut(s) 455, 490
CviAII CATG 7 cut(s) 374, 393, 429, 544, 673, 1500, 1506
CviQI GTAC 3 cut(s) 396, 645, 1442
DdeI CTNAG 2 cut(s) 136, 1214
DpnI GATC 5 cut(s) 1005, 1110, 1398, 1452, 1471
DpnII GATC 5 cut(s) 1003, 1108, 1396, 1450, 1469
EaeI YGGCCR 1 cut(s) 781
Eam1104I CTCTTC 3 cut(s) 76, 255, 880
EarI CTCTTC 3 cut(s) 76, 255, 880
EciI GGCGGA 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 179, 795
Eco31I GGTCTC 1 cut(s) 896
Eco32I GATATC 1 cut(s) 1090
Eco47I GGWCC 1 cut(s) 434
Eco57I CTGAAG 4 cut(s) 279, 330, 1145, 1466
Eco88I CYCGRG 2 cut(s) 75, 1094
Eco91I GGTNACC 1 cut(s) 1312
EcoO109I RGGNCCY 1 cut(s) 1171
EcoO65I GGTNACC 1 cut(s) 1312
EcoRI GAATTC 2 cut(s) 775, 1477
EcoRV GATATC 1 cut(s) 1090
EcoT14I CCWWGG 2 cut(s) 179, 795
ErhI CCWWGG 2 cut(s) 179, 795
Esp3I CGTCTC 1 cut(s) 1378
FaeI CATG 7 cut(s) 377, 396, 432, 547, 676, 1503, 1509
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 1 cut(s) 963
FatI CATG 7 cut(s) 373, 392, 428, 543, 672, 1499, 1505
FbaI TGATCA 1 cut(s) 1003
FblI GTMKAC 3 cut(s) 539, 768, 1165
Fnu4HI GCNGC 7 cut(s) 185, 297, 743, 942, 1071, 1410, 1413
FokI GGATG 2 cut(s) 860, 1480
Fsp4HI GCNGC 7 cut(s) 185, 297, 743, 942, 1071, 1410, 1413
FspBI CTAG 4 cut(s) 180, 639, 993, 1220
GlaI GCGC 1 cut(s) 746
GluI GCNGC 7 cut(s) 185, 297, 743, 942, 1071, 1410, 1413
GsaI CCCAGC 1 cut(s) 1383
GsuI CTGGAG 2 cut(s) 716, 1241
HaeII RGCGCY 1 cut(s) 748
HaeIII GGCC 4 cut(s) 187, 304, 783, 1173
HapII CCGG 3 cut(s) 509, 882, 914
HhaI GCGC 1 cut(s) 747
Hin1II CATG 7 cut(s) 377, 396, 432, 547, 676, 1503, 1509
Hin6I GCGC 1 cut(s) 745
HinP1I GCGC 1 cut(s) 745
HincII GTYRAC 1 cut(s) 1329
HindII GTYRAC 1 cut(s) 1329
HinfI GANTC 7 cut(s) 389, 512, 910, 975, 1196, 1232, 1391
HpaII CCGG 3 cut(s) 509, 882, 914
HphI GGTGA 4 cut(s) 58, 998, 1191, 1306
Hpy166II GTNNAC 6 cut(s) 337, 466, 540, 769, 1166, 1329
Hpy188I TCNGA 5 cut(s) 18, 92, 1113, 1217, 1396
Hpy188III TCNNGA 7 cut(s) 75, 233, 334, 509, 695, 882, 1193
Hpy8I GTNNAC 6 cut(s) 337, 466, 540, 769, 1166, 1329
HpyAV CCTTC 7 cut(s) 258, 593, 811, 962, 1144, 1274, 1441
HpyCH4III ACNGT 5 cut(s) 37, 167, 537, 905, 1283
HpyCH4IV ACGT 1 cut(s) 1032
HpyCH4V TGCA 8 cut(s) 299, 404, 554, 944, 981, 1252, 1415, 1433
HpyF10VI GCNNNNNNNGC 6 cut(s) 184, 488, 560, 1070, 1079, 1258
HpyF3I CTNAG 2 cut(s) 136, 1214
HpySE526I ACGT 1 cut(s) 1032
Hsp92II CATG 7 cut(s) 377, 396, 432, 547, 676, 1503, 1509
HspAI GCGC 1 cut(s) 745
Kpn2I TCCGGA 2 cut(s) 508, 881
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 5 cut(s) 1003, 1108, 1396, 1450, 1469
LmnI GCTCC 3 cut(s) 70, 1266, 1294
Lsp1109I GCAGC 5 cut(s) 283, 928, 1057, 1399, 1421
LweI GCATC 3 cut(s) 52, 1424, 1502
MaeI CTAG 4 cut(s) 180, 639, 993, 1220
MaeII ACGT 1 cut(s) 1032
MaeIII GTNAC 7 cut(s) 46, 167, 381, 854, 997, 1028, 1312
MalI GATC 5 cut(s) 1005, 1110, 1398, 1452, 1471
MboI GATC 5 cut(s) 1003, 1108, 1396, 1450, 1469
MboII GAAGA 9 cut(s) 63, 272, 620, 689, 897, 1138, 1201, 1252, 1340
MfeI CAATTG 3 cut(s) 99, 456, 1203
MflI RGATCY 1 cut(s) 1469
MlsI TGGCCA 1 cut(s) 783
MluNI TGGCCA 1 cut(s) 783
MlyI GAGTC 3 cut(s) 398, 506, 1226
MmeI TCCRAC 1 cut(s) 267
Mox20I TGGCCA 1 cut(s) 783
MroI TCCGGA 2 cut(s) 508, 881
MroXI GAANNNNTTC 1 cut(s) 228
MscI TGGCCA 1 cut(s) 783
MseI TTAA 4 cut(s) 191, 683, 732, 1289
MslI CAYNNNNRTG 3 cut(s) 1307, 1498, 1504
Msp20I TGGCCA 1 cut(s) 783
MspA1I CMGCKG 2 cut(s) 1379, 1412
MspI CCGG 3 cut(s) 509, 882, 914
MunI CAATTG 3 cut(s) 99, 456, 1203
Mva1269I GAATGC 2 cut(s) 34, 1297
MwoI GCNNNNNNNGC 6 cut(s) 184, 488, 560, 1070, 1079, 1258
NdeII GATC 5 cut(s) 1003, 1108, 1396, 1450, 1469
NlaIII CATG 7 cut(s) 377, 396, 432, 547, 676, 1503, 1509
NlaIV GGNNCC 3 cut(s) 231, 1172, 1471
NmuCI GTSAC 3 cut(s) 46, 997, 1312
PaeR7I CTCGAG 2 cut(s) 75, 1094
PctI GAATGC 2 cut(s) 34, 1297
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 4 cut(s) 910, 975, 1196, 1391
PkrI GCNGC 7 cut(s) 186, 298, 744, 943, 1072, 1411, 1414
PleI GAGTC 3 cut(s) 397, 506, 1226
PpsI GAGTC 3 cut(s) 397, 506, 1226
PspEI GGTNACC 1 cut(s) 1312
PspFI CCCAGC 1 cut(s) 1379
PspN4I GGNNCC 3 cut(s) 231, 1172, 1471
PspPI GGNCC 3 cut(s) 302, 434, 1171
PspXI VCTCGAGB 1 cut(s) 1094
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 1469
PvuII CAGCTG 1 cut(s) 1412
RsaI GTAC 3 cut(s) 397, 646, 1443
RsaNI GTAC 3 cut(s) 396, 645, 1442
RseI CAYNNNNRTG 3 cut(s) 1307, 1498, 1504
SaqAI TTAA 4 cut(s) 191, 683, 732, 1289
SatI GCNGC 7 cut(s) 185, 297, 743, 942, 1071, 1410, 1413
Sau3AI GATC 5 cut(s) 1003, 1108, 1396, 1450, 1469
Sau96I GGNCC 3 cut(s) 302, 434, 1171
SchI GAGTC 3 cut(s) 398, 506, 1226
SfaNI GCATC 3 cut(s) 52, 1424, 1502
SfcI CTRYAG 3 cut(s) 36, 297, 904
Sfr274I CTCGAG 2 cut(s) 75, 1094
SinI GGWCC 1 cut(s) 434
SlaI CTCGAG 2 cut(s) 75, 1094
SmiMI CAYNNNNRTG 3 cut(s) 1307, 1498, 1504
SmlI CTYRAG 4 cut(s) 75, 386, 1094, 1403
SmoI CTYRAG 4 cut(s) 75, 386, 1094, 1403
SsiI CCGC 5 cut(s) 105, 176, 184, 742, 1377
SspI AATATT 1 cut(s) 1273
SspMI CTAG 4 cut(s) 180, 639, 993, 1220
StyI CCWWGG 2 cut(s) 179, 795
TaaI ACNGT 5 cut(s) 37, 167, 537, 905, 1283
TaiI ACGT 1 cut(s) 1035
TaqI TCGA 3 cut(s) 76, 1095, 1453
TatI WGTACW 1 cut(s) 644
TauI GCSGC 2 cut(s) 187, 745
TfiI GAWTC 4 cut(s) 910, 975, 1196, 1391
Tru1I TTAA 4 cut(s) 191, 683, 732, 1289
Tru9I TTAA 4 cut(s) 191, 683, 732, 1289
TscAI CASTG 7 cut(s) 262, 288, 556, 901, 988, 1006, 1425
TseFI GTSAC 3 cut(s) 46, 997, 1312
TseI GCWGC 5 cut(s) 296, 941, 1070, 1409, 1412
Tsp45I GTSAC 3 cut(s) 46, 997, 1312
TspDTI ATGAA 5 cut(s) 288, 417, 612, 620, 1260
TspRI CASTG 7 cut(s) 262, 288, 556, 901, 988, 1006, 1425
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 3 cut(s) 690, 775, 1477
XhoI CTCGAG 2 cut(s) 75, 1094
XmaJI CCTAGG 1 cut(s) 179
XmiI GTMKAC 3 cut(s) 539, 768, 1165
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 4 cut(s) 180, 639, 993, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.