RLG00000010643

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004129
Physical Location & Seq
Forward (+)
3222943 .. 3226198
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010643

Sequence Viewer

Length: 1236 bp
ATGATCTATGTCAGGAATGGGTTCCTGAACCTCTCATCCCTCCTATCACTGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGGGCCACACACAATAGTTAATGGCAAAGAAGTCGTGAACTTTGCTGCAGCAAATTATCTTGGATTGATAGGACATGAGAAGTTGCTTGAGTCATGTACCTCTGCATTGGAGAAATATGGTGTTGGTTCATGTGGTCCTCGTGGGTTCTATGGAACAATTGATGTCCACCTTGATTGTGAGGCAAGAATAGCAAAGTTTTTGGGAACTCCTGACTCAATTCTCTATTCTTATGGTCTCTCCACCATGTTCAGTGCAATTCCAGCATTTTGCAAAAAAGGAGATATCATTGTTGTGGATGAAGGAGTCCATTGGGGAATACAAAATGGTCTTTATCTTTCTAGAAGCACAATTGTGTATTTCAAGCATAATGACATGGAATCATTAAGGAATACTCTGGAGGAAATCACTGTGAAGAGTAAGCGGGCTAAGAAACTCCGGCGTTACATTGTGGTTGAAGCTGTTTACCAGAACTCTGGCCAAATAGCCCCCTTGGACGAAATTGTTAAATTGAAAGAGAAATATAGGTTTCGTGTTTTGTTAGATGAGAGCAACTCATTTGGTGTCCTTGGAAGAGCTGGACGAGGTCTCACAGAATTTTGCAGGGTGCCGGTTGAAAAGATAGATATTATTACTGCTGCAATGGGACACGCCTTAGCCGCAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTCACTGATCACCAGCGATTGAGCAGTTCTGGGTACGTCTTTTCTGCTTCTTTGCCCCCTTATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGAGGAGAATCCTGATCTGTTGACAAAGTTGAAGAAAAACATTACGTTACTATGGAAAGGATTGTCAGGTGTAATGGGCCTCTCCTTAGCGAGCAATCCAGAATCACCCATTGTGTTTCTCAAACTACAGAAGTCAACAGGTTCTGTGAAGAGTGACCTGCAACTCCTCGTCGATATTGCTGACCGTTTGTTAAAGGATTATTCAATTCTTGCAGTGGCGTCCAAAAGGTCGACACTTGATAAATGCCGTTTGCCTGTGGGAATTAAACTGTTTGTTTCTGCTGCTCATTCAGAATCAGATCTGCTCAAGGCATCAGAGTCACTGAAAACGGTTGCAGAATTAGTGCTGAAGAATCATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

412

Amino Acids

44.95

Weight (kDa)

8.96

Isoelectric Point (pI)

27.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 38 - 396 6.4e-35 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1038
AccB1I GGYRCC 1 cut(s) 688
AccI GTMKAC 1 cut(s) 1103
AciI CCGC 2 cut(s) 505, 741
AcoI YGGCCR 1 cut(s) 559
AcsI RAATTY 1 cut(s) 677
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 1091
AfaI GTAC 2 cut(s) 181, 809
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 6 cut(s) 445, 539, 595, 698, 904, 1077
AleI CACNNNNGTG 1 cut(s) 434
AloI GAACNNNNNNTCC 2 cut(s) 20, 52
AluBI AGCT 2 cut(s) 542, 659
AluI AGCT 2 cut(s) 542, 659
Alw26I GTCTC 2 cut(s) 323, 674
AlwNI CAGNNNCTG 1 cut(s) 1016
AoxI GGCC 3 cut(s) 86, 559, 949
ApeKI GCWGC 5 cut(s) 128, 131, 719, 848, 1154
ApoI RAATTY 1 cut(s) 677
Asp700I GAANNNNTTC 1 cut(s) 20
AspS9I GGNCC 3 cut(s) 86, 218, 949
AsuHPI GGTGA 2 cut(s) 776, 969
AvaII GGWCC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 561
BanI GGYRCC 1 cut(s) 688
BauI CACGAG 1 cut(s) 222
BbvI GCAGC 5 cut(s) 115, 143, 706, 835, 1141
BceAI ACGGC 1 cut(s) 1104
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BclI TGATCA 1 cut(s) 781
BcoDI GTCTC 2 cut(s) 323, 674
BfaI CTAG 2 cut(s) 423, 771
BfmI CTRYAG 2 cut(s) 129, 998
BfuAI ACCTGC 1 cut(s) 1038
BglII AGATCT 1 cut(s) 1171
BisI GCNGC 6 cut(s) 129, 132, 720, 741, 849, 1155
BlsI GCNGC 6 cut(s) 130, 133, 721, 742, 850, 1156
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 3 cut(s) 86, 218, 949
BmiI GGNNCC 2 cut(s) 23, 690
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 1193
BmuI ACTGGG 1 cut(s) 67
BplI GAGNNNNNCTC 2 cut(s) 620, 652
BpmI CTGGAG 1 cut(s) 500
Bpu10I CCTNAGC 2 cut(s) 736, 958
BpuEI CTTGAG 3 cut(s) 191, 893, 1163
BsaHI GRCGYC 1 cut(s) 1091
BsaI GGTCTC 2 cut(s) 323, 674
BsaJI CCNNGG 2 cut(s) 573, 649
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse118I RCCGGY 1 cut(s) 691
Bse1I ACTGG 2 cut(s) 73, 766
Bse3DI GCAATG 1 cut(s) 729
BseDI CCNNGG 2 cut(s) 573, 649
BseGI GGATG 2 cut(s) 35, 385
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 729
BseNI ACTGG 2 cut(s) 73, 766
BseRI GAGGAG 2 cut(s) 890, 1028
BseXI GCAGC 5 cut(s) 115, 143, 706, 835, 1141
BsgI GTGCAG 1 cut(s) 742
BshFI GGCC 3 cut(s) 88, 561, 951
BshNI GGYRCC 1 cut(s) 688
BsiSI CCGG 2 cut(s) 520, 692
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 2 cut(s) 323, 674
BsmFI GGGAC 1 cut(s) 741
BsnI GGCC 3 cut(s) 88, 561, 951
Bso31I GGTCTC 2 cut(s) 323, 674
Bsp143I GATC 4 cut(s) 3, 781, 886, 1171
BspACI CCGC 2 cut(s) 505, 741
BspANI GGCC 3 cut(s) 88, 561, 951
BspLI GGNNCC 2 cut(s) 23, 690
BspMAI CTGCAG 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 1038
BspQI GCTCTTC 1 cut(s) 649
BspT107I GGYRCC 1 cut(s) 688
BspTNI GGTCTC 2 cut(s) 323, 674
BsrDI GCAATG 1 cut(s) 729
BsrFI RCCGGY 1 cut(s) 691
BsrI ACTGG 2 cut(s) 73, 766
BssAI RCCGGY 1 cut(s) 691
BssECI CCNNGG 2 cut(s) 573, 649
BssMI GATC 4 cut(s) 3, 781, 886, 1171
BssNI GRCGYC 1 cut(s) 1091
BssSI CACGAG 1 cut(s) 222
BssT1I CCWWGG 2 cut(s) 573, 649
Bst2BI CACGAG 1 cut(s) 222
Bst4CI ACNGT 4 cut(s) 493, 1058, 1143, 1204
Bst6I CTCTTC 3 cut(s) 491, 649, 1016
BstACI GRCGYC 1 cut(s) 1091
BstC8I GCNNGC 2 cut(s) 507, 964
BstDEI CTNAG 3 cut(s) 510, 736, 958
BstF5I GGATG 2 cut(s) 35, 385
BstKTI GATC 4 cut(s) 6, 784, 889, 1174
BstMAI GTCTC 2 cut(s) 323, 674
BstMBI GATC 4 cut(s) 3, 781, 886, 1171
BstMWI GCNNNNNNNGC 5 cut(s) 272, 344, 740, 848, 857
BstSFI CTRYAG 2 cut(s) 129, 998
BstV1I GCAGC 5 cut(s) 115, 143, 706, 835, 1141
BstX2I RGATCY 1 cut(s) 1171
BstXI CCANNNNNNTGG 1 cut(s) 557
BstYI RGATCY 1 cut(s) 1171
BsuRI GGCC 3 cut(s) 88, 561, 951
BtsCI GGATG 2 cut(s) 35, 385
BtsI GCAGTG 1 cut(s) 1092
BtsIMutI CAGTG 8 cut(s) 47, 80, 340, 489, 759, 777, 1092, 1193
BveI ACCTGC 1 cut(s) 1038
Cac8I GCNNGC 2 cut(s) 507, 964
CaiI CAGNNNCTG 1 cut(s) 1016
Cfr10I RCCGGY 1 cut(s) 691
Cfr13I GGNCC 3 cut(s) 86, 218, 949
CseI GACGC 1 cut(s) 1080
Csp6I GTAC 2 cut(s) 180, 808
CspCI CAANNNNNGTGG 2 cut(s) 239, 274
CviAII CATG 5 cut(s) 158, 177, 213, 328, 457
CviJI RGCY 8 cut(s) 88, 509, 542, 561, 569, 659, 740, 951
CviKI_1 RGCY 8 cut(s) 88, 509, 542, 561, 569, 659, 740, 951
CviQI GTAC 2 cut(s) 180, 808
DdeI CTNAG 3 cut(s) 510, 736, 958
DpnI GATC 4 cut(s) 5, 783, 888, 1173
DpnII GATC 4 cut(s) 3, 781, 886, 1171
EaeI YGGCCR 1 cut(s) 559
Eam1104I CTCTTC 3 cut(s) 491, 649, 1016
EarI CTCTTC 3 cut(s) 491, 649, 1016
Eco130I CCWWGG 2 cut(s) 573, 649
Eco31I GGTCTC 2 cut(s) 323, 674
Eco32I GATATC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 71
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 2 cut(s) 573, 649
ErhI CCWWGG 2 cut(s) 573, 649
FaeI CATG 5 cut(s) 161, 180, 216, 331, 460
FaqI GGGAC 1 cut(s) 741
FatI CATG 5 cut(s) 157, 176, 212, 327, 456
FauI CCCGC 1 cut(s) 498
FbaI TGATCA 1 cut(s) 781
FblI GTMKAC 1 cut(s) 1103
Fnu4HI GCNGC 6 cut(s) 129, 132, 720, 741, 849, 1155
FokI GGATG 2 cut(s) 22, 392
Fsp4HI GCNGC 6 cut(s) 129, 132, 720, 741, 849, 1155
FspBI CTAG 2 cut(s) 423, 771
GluI GCNGC 6 cut(s) 129, 132, 720, 741, 849, 1155
GsuI CTGGAG 1 cut(s) 500
HaeIII GGCC 3 cut(s) 88, 561, 951
HapII CCGG 2 cut(s) 520, 692
HgaI GACGC 1 cut(s) 1080
Hin1I GRCGYC 1 cut(s) 1091
Hin1II CATG 5 cut(s) 161, 180, 216, 331, 460
HincII GTYRAC 3 cut(s) 894, 1008, 1104
HindII GTYRAC 3 cut(s) 894, 1008, 1104
HpaII CCGG 2 cut(s) 520, 692
HphI GGTGA 2 cut(s) 776, 969
Hpy166II GTNNAC 6 cut(s) 121, 250, 547, 894, 1008, 1104
Hpy188I TCNGA 3 cut(s) 1165, 1171, 1189
Hpy188III TCNNGA 9 cut(s) 13, 25, 118, 293, 423, 479, 872, 884, 971
Hpy8I GTNNAC 6 cut(s) 121, 250, 547, 894, 1008, 1104
Hpy99I CGWCG 1 cut(s) 1046
HpyAV CCTTC 2 cut(s) 377, 740
HpyCH4III ACNGT 4 cut(s) 493, 1058, 1143, 1204
HpyCH4IV ACGT 2 cut(s) 810, 917
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 344, 740, 848, 857
HpyF3I CTNAG 3 cut(s) 510, 736, 958
HpySE526I ACGT 2 cut(s) 810, 917
Hsp92I GRCGYC 1 cut(s) 1091
Hsp92II CATG 5 cut(s) 161, 180, 216, 331, 460
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 4 cut(s) 3, 781, 886, 1171
LguI GCTCTTC 1 cut(s) 649
Lsp1109I GCAGC 5 cut(s) 115, 143, 706, 835, 1141
LweI GCATC 1 cut(s) 1193
MaeI CTAG 2 cut(s) 423, 771
MaeII ACGT 2 cut(s) 810, 917
MaeIII GTNAC 5 cut(s) 524, 775, 918, 1025, 1191
MalI GATC 4 cut(s) 5, 783, 888, 1173
MboI GATC 4 cut(s) 3, 781, 886, 1171
MboII GAAGA 6 cut(s) 64, 508, 666, 916, 1033, 1234
MfeI CAATTG 2 cut(s) 240, 432
MflI RGATCY 1 cut(s) 1171
MlsI TGGCCA 1 cut(s) 561
MluNI TGGCCA 1 cut(s) 561
MlyI GAGTC 5 cut(s) 182, 290, 396, 783, 1199
MmeI TCCRAC 1 cut(s) 59
Mox20I TGGCCA 1 cut(s) 561
MroXI GAANNNNTTC 1 cut(s) 20
MscI TGGCCA 1 cut(s) 561
MseI TTAA 5 cut(s) 102, 467, 588, 1064, 1137
MslI CAYNNNNRTG 2 cut(s) 374, 434
Msp20I TGGCCA 1 cut(s) 561
MspI CCGG 2 cut(s) 520, 692
MunI CAATTG 2 cut(s) 240, 432
MwoI GCNNNNNNNGC 5 cut(s) 272, 344, 740, 848, 857
NdeII GATC 4 cut(s) 3, 781, 886, 1171
NlaIII CATG 5 cut(s) 161, 180, 216, 331, 460
NlaIV GGNNCC 2 cut(s) 23, 690
NmuCI GTSAC 3 cut(s) 775, 1025, 1191
OliI CACNNNNGTG 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 649
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 6 cut(s) 461, 753, 880, 974, 1166, 1225
PflFI GACNNNGTC 1 cut(s) 666
PkrI GCNGC 6 cut(s) 130, 133, 721, 742, 850, 1156
PleI GAGTC 5 cut(s) 181, 290, 395, 782, 1198
PpsI GAGTC 5 cut(s) 181, 290, 395, 782, 1198
PspN4I GGNNCC 2 cut(s) 23, 690
PspPI GGNCC 3 cut(s) 86, 218, 949
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 1016
PsuI RGATCY 1 cut(s) 1171
PsyI GACNNNGTC 1 cut(s) 666
RsaI GTAC 2 cut(s) 181, 809
RsaNI GTAC 2 cut(s) 180, 808
RseI CAYNNNNRTG 2 cut(s) 374, 434
SalI GTCGAC 1 cut(s) 1102
SapI GCTCTTC 1 cut(s) 649
SaqAI TTAA 5 cut(s) 102, 467, 588, 1064, 1137
SatI GCNGC 6 cut(s) 129, 132, 720, 741, 849, 1155
Sau3AI GATC 4 cut(s) 3, 781, 886, 1171
Sau96I GGNCC 3 cut(s) 86, 218, 949
SchI GAGTC 5 cut(s) 182, 290, 396, 783, 1199
SfaNI GCATC 1 cut(s) 1193
SfcI CTRYAG 2 cut(s) 129, 998
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 374, 434
SmlI CTYRAG 3 cut(s) 170, 872, 1178
SmoI CTYRAG 3 cut(s) 170, 872, 1178
SsiI CCGC 2 cut(s) 505, 741
SspMI CTAG 2 cut(s) 423, 771
StyI CCWWGG 2 cut(s) 573, 649
TaaI ACNGT 4 cut(s) 493, 1058, 1143, 1204
TaiI ACGT 2 cut(s) 813, 920
TaqI TCGA 2 cut(s) 1044, 1103
TauI GCSGC 1 cut(s) 743
TfiI GAWTC 6 cut(s) 461, 753, 880, 974, 1166, 1225
Tru1I TTAA 5 cut(s) 102, 467, 588, 1064, 1137
Tru9I TTAA 5 cut(s) 102, 467, 588, 1064, 1137
TscAI CASTG 8 cut(s) 54, 80, 340, 496, 766, 784, 1092, 1200
TseFI GTSAC 3 cut(s) 775, 1025, 1191
TseI GCWGC 5 cut(s) 128, 131, 719, 848, 1154
Tsp45I GTSAC 3 cut(s) 775, 1025, 1191
TspDTI ATGAA 3 cut(s) 80, 201, 396
TspRI CASTG 8 cut(s) 54, 80, 340, 496, 766, 784, 1092, 1200
Tth111I GACNNNGTC 1 cut(s) 666
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 677
XbaI TCTAGA 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 1103
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 2 cut(s) 423, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.