Prupe.1G431600_v2.0.a1

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004129
Physical Location & Seq
Forward (+)
36972533 .. 36977655
5123 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G431600.3

Sequence Viewer

Length: 1452 bp
ATGGCATCAAGTTTTCTGAACATAGTGAATGCTACTTTAGATTGGGTGACAGCGACTTTGGATGCTCCCTCTTCTCGAGCTATTGTTTTTGGAGTTCCTATTGGCGGACATTTATTTGTAGAAGTTCTTCTTTTCTTAGTCATTGTTTTTCTACTTTCCCAGAAAAGTTACAAGCCACCTAAGCGGCCTTTAACAGAGAAGGAAATAGATGAGCTATGTGAGGAATGGGTTCCTGAATCTCTTATTCCTCCTATCACTGAAGAGATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACATGCAATAATCAATGGTAAAGAAGTCGTGAACTTTGCTGCAGCAAATTATCTTGGATTGATAGGACATGAGAAATTACTTGAGTCATGTACCTCTGCATTGGAGAAATATGGTGTTGGTTCCTGTGGTCCTCGTGGGTTTTATGGAACAATTGATGTTCACCTTGATTGTGAGGCAAGAATAGCAAAGTTTTTGGGAACTCCTGACTCAATTGTCTATTCGTATGGACTGTCTACCATGTTCAGTGCAATTCCCGCATTTTGCAAGAAAGGAGATATTATTGTTGTGGATGAAGGAGTCCATTGGGGAATTCAAAATGGTCTATATCTTTCTAGAAGTACAATTGTGTACTTCAAGCACAATGACATGGAATCTTTAAGAAATACTCTGGAGAAAATCACTGTGAAGAATCAGCGGGCTAAGAAATTGAGGCGCTACATCGTGGTTGAAGCTGTGTACCAGAATTCTGGCCAAATAGCCCCCTTGGACGAGATTGTTAAATTGAAGGAGAAATATAGGTTTCGTGTTGTATTGGATGAGAGCAACTCATTTGGTGTGCTTGGAAAAGCTGGAAGAGGTCTCACTGAATTCTGTGGGGTTCCGGTAGAAAAAATTGATATTATTACTGCTGCAATGGGACACGCATTAGCCACAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTCACTGATCACCAACGATTGAGCAGTTCTGGGTACGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCAAGTGGTGCCATTACTGCCATTGATGTCCTTGAGGAAAACCCTGATCTGATAACAAAGCTGAAGAAAAACATTGCTGTATTATGGAAAGGTTTGTCAGGTATACTTGGCCTCTCATTAGCGAGCAATCCTGAATCACCCATTGTTTTTCTTAGACTAGAGAAGTCAACAGGTTCCGTGAAGAGTGACCTACAACTCCTTGAAGATATTTCTGACCGTTTGTTGAAGGAATATTCCATTTTTGTGGTGACCTCCAAAAGGTCAACCCTTGATAAATGTCGTCTGCCCGTAGGAATTAGATTGTTTGTTTCTGCTGCCCATTTGGAATCTGATCTGCTCAAGGCATCCGAATCGCTAAAAAGGGTTGCAGAATTGGTGCTGAAGGATCATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

484

Amino Acids

52.93

Weight (kDa)

6.25

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 518
AccB1I GGYRCC 1 cut(s) 1064
AccI GTMKAC 2 cut(s) 539, 1159
AciI CCGC 4 cut(s) 105, 184, 561, 721
AclWI GGATC 1 cut(s) 1449
AcoI YGGCCR 1 cut(s) 775
AcsI RAATTY 3 cut(s) 615, 769, 893
AcuI CTGAAG 2 cut(s) 279, 1139
AfaI GTAC 5 cut(s) 397, 646, 656, 764, 1025
AfiI CCNNNNNNNGG 3 cut(s) 104, 286, 1314
AgsI TTSAA 6 cut(s) 620, 661, 755, 811, 1259, 1282
AluBI AGCT 5 cut(s) 80, 214, 758, 875, 1117
AluI AGCT 5 cut(s) 80, 214, 758, 875, 1117
Alw26I GTCTC 1 cut(s) 890
AlwI GGATC 1 cut(s) 1449
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 4 cut(s) 185, 302, 775, 1165
ApeKI GCWGC 5 cut(s) 296, 344, 347, 935, 1370
ApoI RAATTY 3 cut(s) 615, 769, 893
ArsI GACNNNNNNTTYG 2 cut(s) 40, 72
Asp700I GAANNNNTTC 2 cut(s) 126, 228
AspLEI GCGC 1 cut(s) 741
AspS9I GGNCC 2 cut(s) 302, 434
AsuHPI GGTGA 5 cut(s) 58, 458, 992, 1185, 1315
AvaI CYCGRG 1 cut(s) 75
AvaII GGWCC 1 cut(s) 434
BalI TGGCCA 1 cut(s) 777
BanI GGYRCC 1 cut(s) 1064
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BauI CACGAG 1 cut(s) 438
BbvI GCAGC 5 cut(s) 283, 331, 359, 922, 1357
BcgI CGANNNNNNTGC 2 cut(s) 1389, 1423
BclI TGATCA 1 cut(s) 997
BcoDI GTCTC 1 cut(s) 890
BfaI CTAG 3 cut(s) 639, 987, 1214
BfmI CTRYAG 2 cut(s) 297, 345
BfoI RGCGCY 1 cut(s) 742
BisI GCNGC 6 cut(s) 185, 297, 345, 348, 936, 1371
BlsI GCNGC 6 cut(s) 186, 298, 346, 349, 937, 1372
Bme18I GGWCC 1 cut(s) 434
BmeT110I CYCGRG 1 cut(s) 75
BmgT120I GGNCC 2 cut(s) 302, 434
BmiI GGNNCC 5 cut(s) 231, 427, 906, 1066, 1231
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 4 cut(s) 14, 52, 255, 1409
BmuI ACTGGG 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 836, 868
BpmI CTGGAG 1 cut(s) 716
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 3 cut(s) 407, 1109, 1379
BsaI GGTCTC 1 cut(s) 890
BsaJI CCNNGG 1 cut(s) 789
BsaWI WCCGGW 1 cut(s) 907
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 286, 1314
Bse1I ACTGG 2 cut(s) 281, 982
Bse3DI GCAATG 2 cut(s) 945, 1128
BseDI CCNNGG 1 cut(s) 789
BseGI GGATG 4 cut(s) 67, 601, 847, 1400
BseLI CCNNNNNNNGG 3 cut(s) 104, 286, 1314
BseMI GCAATG 2 cut(s) 945, 1128
BseNI ACTGG 2 cut(s) 281, 982
BseXI GCAGC 5 cut(s) 283, 331, 359, 922, 1357
BsgI GTGCAG 1 cut(s) 958
BshFI GGCC 4 cut(s) 187, 304, 777, 1167
BshNI GGYRCC 1 cut(s) 1064
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 908
BslFI GGGAC 1 cut(s) 957
BslI CCNNNNNNNGG 3 cut(s) 104, 286, 1314
BsmAI GTCTC 1 cut(s) 890
BsmFI GGGAC 1 cut(s) 957
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 4 cut(s) 187, 304, 777, 1167
Bso31I GGTCTC 1 cut(s) 890
BsoBI CYCGRG 1 cut(s) 75
Bsp143I GATC 4 cut(s) 997, 1102, 1387, 1441
BspACI CCGC 4 cut(s) 105, 184, 561, 721
BspANI GGCC 4 cut(s) 187, 304, 777, 1167
BspLI GGNNCC 5 cut(s) 231, 427, 906, 1066, 1231
BspMAI CTGCAG 2 cut(s) 301, 349
BspPI GGATC 1 cut(s) 1449
BspT107I GGYRCC 1 cut(s) 1064
BspTNI GGTCTC 1 cut(s) 890
BsrDI GCAATG 2 cut(s) 945, 1128
BsrI ACTGG 2 cut(s) 281, 982
BssECI CCNNGG 1 cut(s) 789
BssMI GATC 4 cut(s) 997, 1102, 1387, 1441
BssNAI GTATAC 1 cut(s) 1160
BssSI CACGAG 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 789
Bst1107I GTATAC 1 cut(s) 1160
Bst2BI CACGAG 1 cut(s) 438
Bst4CI ACNGT 3 cut(s) 537, 709, 1274
Bst6I CTCTTC 4 cut(s) 76, 255, 874, 1232
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstC8I GCNNGC 2 cut(s) 723, 1180
BstDEI CTNAG 4 cut(s) 136, 180, 726, 1208
BstEII GGTNACC 1 cut(s) 1303
BstENI CCTNNNNNAGG 1 cut(s) 1312
BstF5I GGATG 4 cut(s) 67, 601, 847, 1400
BstH2I RGCGCY 1 cut(s) 742
BstHHI GCGC 1 cut(s) 741
BstKTI GATC 4 cut(s) 1000, 1105, 1390, 1444
BstMAI GTCTC 1 cut(s) 890
BstMBI GATC 4 cut(s) 997, 1102, 1387, 1441
BstMWI GCNNNNNNNGC 5 cut(s) 181, 488, 560, 1064, 1073
BstNSI RCATGY 1 cut(s) 311
BstPI GGTNACC 1 cut(s) 1303
BstSFI CTRYAG 2 cut(s) 297, 345
BstV1I GCAGC 5 cut(s) 283, 331, 359, 922, 1357
BstXI CCANNNNNNTGG 2 cut(s) 773, 1300
BstZ17I GTATAC 1 cut(s) 1160
BsuRI GGCC 4 cut(s) 187, 304, 777, 1167
BtsCI GGATG 4 cut(s) 67, 601, 847, 1400
BtsIMutI CAGTG 7 cut(s) 255, 288, 556, 705, 888, 975, 993
Cac8I GCNNGC 2 cut(s) 723, 1180
CfoI GCGC 1 cut(s) 741
Cfr13I GGNCC 2 cut(s) 302, 434
Csp6I GTAC 5 cut(s) 396, 645, 655, 763, 1024
CviAII CATG 5 cut(s) 308, 374, 393, 544, 673
CviQI GTAC 5 cut(s) 396, 645, 655, 763, 1024
DdeI CTNAG 4 cut(s) 136, 180, 726, 1208
DpnI GATC 4 cut(s) 999, 1104, 1389, 1443
DpnII GATC 4 cut(s) 997, 1102, 1387, 1441
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
EaeI YGGCCR 1 cut(s) 775
Eam1104I CTCTTC 4 cut(s) 76, 255, 874, 1232
EarI CTCTTC 4 cut(s) 76, 255, 874, 1232
EciI GGCGGA 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 789
Eco31I GGTCTC 1 cut(s) 890
Eco47I GGWCC 1 cut(s) 434
Eco57I CTGAAG 2 cut(s) 279, 1139
Eco88I CYCGRG 1 cut(s) 75
Eco91I GGTNACC 1 cut(s) 1303
EcoNI CCTNNNNNAGG 1 cut(s) 1312
EcoO65I GGTNACC 1 cut(s) 1303
EcoRI GAATTC 3 cut(s) 615, 769, 893
EcoT14I CCWWGG 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 5 cut(s) 311, 377, 396, 547, 676
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 1 cut(s) 957
FatI CATG 5 cut(s) 307, 373, 392, 543, 672
FauI CCCGC 2 cut(s) 568, 714
FbaI TGATCA 1 cut(s) 997
FblI GTMKAC 2 cut(s) 539, 1159
Fnu4HI GCNGC 6 cut(s) 185, 297, 345, 348, 936, 1371
FokI GGATG 4 cut(s) 74, 608, 854, 1387
Fsp4HI GCNGC 6 cut(s) 185, 297, 345, 348, 936, 1371
FspBI CTAG 3 cut(s) 639, 987, 1214
GlaI GCGC 1 cut(s) 740
GluI GCNGC 6 cut(s) 185, 297, 345, 348, 936, 1371
GsuI CTGGAG 1 cut(s) 716
HaeII RGCGCY 1 cut(s) 742
HaeIII GGCC 4 cut(s) 187, 304, 777, 1167
HapII CCGG 1 cut(s) 908
HhaI GCGC 1 cut(s) 741
Hin1II CATG 5 cut(s) 311, 377, 396, 547, 676
Hin6I GCGC 1 cut(s) 739
HinP1I GCGC 1 cut(s) 739
HincII GTYRAC 2 cut(s) 1224, 1320
HindII GTYRAC 2 cut(s) 1224, 1320
HpaII CCGG 1 cut(s) 908
HphI GGTGA 5 cut(s) 58, 458, 992, 1185, 1315
Hpy166II GTNNAC 8 cut(s) 337, 466, 540, 655, 763, 1160, 1224, 1320
Hpy188I TCNGA 5 cut(s) 18, 1107, 1270, 1387, 1405
Hpy188III TCNNGA 7 cut(s) 75, 233, 334, 509, 639, 695, 1187
Hpy8I GTNNAC 8 cut(s) 337, 466, 540, 655, 763, 1160, 1224, 1320
HpyAV CCTTC 6 cut(s) 193, 593, 805, 956, 1276, 1432
HpyCH4III ACNGT 3 cut(s) 537, 709, 1274
HpyCH4IV ACGT 1 cut(s) 1026
HpyF10VI GCNNNNNNNGC 5 cut(s) 181, 488, 560, 1064, 1073
HpyF3I CTNAG 4 cut(s) 136, 180, 726, 1208
HpySE526I ACGT 1 cut(s) 1026
Hsp92II CATG 5 cut(s) 311, 377, 396, 547, 676
HspAI GCGC 1 cut(s) 739
Ksp22I TGATCA 1 cut(s) 997
Kzo9I GATC 4 cut(s) 997, 1102, 1387, 1441
LmnI GCTCC 1 cut(s) 70
Lsp1109I GCAGC 5 cut(s) 283, 331, 359, 922, 1357
LweI GCATC 4 cut(s) 14, 52, 255, 1409
MaeI CTAG 3 cut(s) 639, 987, 1214
MaeII ACGT 1 cut(s) 1026
MaeIII GTNAC 5 cut(s) 46, 167, 991, 1241, 1303
MalI GATC 4 cut(s) 999, 1104, 1389, 1443
MboI GATC 4 cut(s) 997, 1102, 1387, 1441
MboII GAAGA 8 cut(s) 63, 119, 272, 724, 891, 1132, 1249, 1271
MfeI CAATTG 3 cut(s) 456, 516, 648
MlsI TGGCCA 1 cut(s) 777
MluNI TGGCCA 1 cut(s) 777
MlyI GAGTC 4 cut(s) 398, 506, 612, 999
MmeI TCCRAC 1 cut(s) 267
Mox20I TGGCCA 1 cut(s) 777
MroXI GAANNNNTTC 2 cut(s) 126, 228
MscI TGGCCA 1 cut(s) 777
MseI TTAA 3 cut(s) 191, 683, 804
MslI CAYNNNNRTG 1 cut(s) 1298
Msp20I TGGCCA 1 cut(s) 777
MspA1I CMGCKG 1 cut(s) 721
MspI CCGG 1 cut(s) 908
MunI CAATTG 3 cut(s) 456, 516, 648
Mva1269I GAATGC 1 cut(s) 34
MwoI GCNNNNNNNGC 5 cut(s) 181, 488, 560, 1064, 1073
NdeII GATC 4 cut(s) 997, 1102, 1387, 1441
NlaIII CATG 5 cut(s) 311, 377, 396, 547, 676
NlaIV GGNNCC 5 cut(s) 231, 427, 906, 1066, 1231
NmuCI GTSAC 4 cut(s) 46, 991, 1241, 1303
NspI RCATGY 1 cut(s) 311
PaeR7I CTCGAG 1 cut(s) 75
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 2 cut(s) 126, 228
PfeI GAWTC 7 cut(s) 236, 677, 715, 969, 1190, 1382, 1406
PkrI GCNGC 6 cut(s) 186, 298, 346, 349, 937, 1372
PleI GAGTC 4 cut(s) 397, 506, 611, 998
PpsI GAGTC 4 cut(s) 397, 506, 611, 998
PspEI GGTNACC 1 cut(s) 1303
PspN4I GGNNCC 5 cut(s) 231, 427, 906, 1066, 1231
PspPI GGNCC 2 cut(s) 302, 434
PstI CTGCAG 2 cut(s) 301, 349
RsaI GTAC 5 cut(s) 397, 646, 656, 764, 1025
RsaNI GTAC 5 cut(s) 396, 645, 655, 763, 1024
RseI CAYNNNNRTG 1 cut(s) 1298
SaqAI TTAA 3 cut(s) 191, 683, 804
SatI GCNGC 6 cut(s) 185, 297, 345, 348, 936, 1371
Sau3AI GATC 4 cut(s) 997, 1102, 1387, 1441
Sau96I GGNCC 2 cut(s) 302, 434
SchI GAGTC 4 cut(s) 398, 506, 612, 999
SfaNI GCATC 4 cut(s) 14, 52, 255, 1409
SfcI CTRYAG 2 cut(s) 297, 345
Sfr274I CTCGAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 434
SlaI CTCGAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 1298
SmlI CTYRAG 4 cut(s) 75, 386, 1088, 1394
SmoI CTYRAG 4 cut(s) 75, 386, 1088, 1394
SsiI CCGC 4 cut(s) 105, 184, 561, 721
SspI AATATT 1 cut(s) 1289
SspMI CTAG 3 cut(s) 639, 987, 1214
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 3 cut(s) 537, 709, 1274
TaiI ACGT 1 cut(s) 1029
TaqI TCGA 1 cut(s) 76
TatI WGTACW 2 cut(s) 644, 654
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 7 cut(s) 236, 677, 715, 969, 1190, 1382, 1406
Tru1I TTAA 3 cut(s) 191, 683, 804
Tru9I TTAA 3 cut(s) 191, 683, 804
TscAI CASTG 7 cut(s) 262, 288, 556, 712, 895, 982, 1000
TseFI GTSAC 4 cut(s) 46, 991, 1241, 1303
TseI GCWGC 5 cut(s) 296, 344, 347, 935, 1370
Tsp45I GTSAC 4 cut(s) 46, 991, 1241, 1303
TspDTI ATGAA 2 cut(s) 288, 612
TspGWI ACGGA 1 cut(s) 1222
TspRI CASTG 7 cut(s) 262, 288, 556, 712, 895, 982, 1000
VpaK11BI GGWCC 1 cut(s) 434
XagI CCTNNNNNAGG 1 cut(s) 1312
XapI RAATTY 3 cut(s) 615, 769, 893
XbaI TCTAGA 1 cut(s) 638
XceI RCATGY 1 cut(s) 311
XhoI CTCGAG 1 cut(s) 75
XmiI GTMKAC 2 cut(s) 539, 1159
XmnI GAANNNNTTC 2 cut(s) 126, 228
XspI CTAG 3 cut(s) 639, 987, 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.