FvH4_2g33970

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004129
Physical Location & Seq
Forward (+)
25337458 .. 25342349
4892 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33970.t5

Sequence Viewer

Length: 1455 bp
ATGGCATCGAATTATGTGTTGAACTTGGTGAATTCTACGTTGGATTGGGTGACTGCCACTTTAGATGCTCCCTCCTCCAGAGCTGTTGTTTTTGGAGTGCCGATCGGCGGACATCTTTTTGTGGAAGTACTTCTTTTTGCTGTCATTGTTTTTCTACTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACCAAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACACCCAATAGTCAATGGCAAAGAAGTTGTGAACTTTGCTGCAGCAAATTATCTTGGATTAATTGGACATGAGAAGTTGCTTGAGTCATGTACCTCTGCATTAGAGAAATATGGTGTTGGTTCATGTGGTCCTCGTGGGTTCTATGGCACAATTGATGTCCACCTTGATTGTGAGGCAAGAATAGCAAAGTTTTTGGGAACCCCTGATTCAATTCTCTATTCTTATGGTCTCTCCACCATGTTCAGTGCAATTCCAGCATTTTGCAAAAAAGGAGATATCATTGTTGTGGACGAAGGAGTCCATTGGGGAATACAAAATGGACTTTATCTTTCTAGAAGCACAATTGTGTATTTTAAGCATAATGACATGGAATCATTAAGGAACACTTTGGAGGAAATCACTGTGAAGAATAAGCGTGCTAAGAAACTCCGACGCTACATTGTGGTTGAAGCTGTGTACCAGAATTCTGGCCAAATAGCCCCCTTAGACGAAATTGTTAAATTGAAGGAGAAATATTTCTTTCGTGTTTTATTAGATGAGAGCAACTCATTTGGTGTGCTTGGAAAAGCTGGACGAGGTCTCACTGAATTTTGCGGGGTTCCGGTTGACAAGATAGATATTATTACTGCTGCAATGGGACACGCCTTAGCCGCAGAAGGAGGCTTCTGCACAGGAAGTGCTAGAGTCACTGATCACCAACGACTGAGCAGTTCTGGGTATGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGAGGAGAACCCTGATCTGATAATGAAACTGAAGAAAAACATTTCGTTACTATGGAAAGGATTGGCAGGAGTAACAGGCCTCTCATTAGCGAGCAATCCAGAATCACCCATTGTGTTTCTCAAACTCCAGAAGTCAACAGGTTCTATAAAGAGTGACCTGCAGCTCTTCGATGATATTGCAGACCGTTTGTTAAAGGAACATTCAGTTCTTGCGGTGGCCTCCAAAAGGTCGATACTTGATAAGTGTCGTTTGCCGGTGGGAATTAGACTGTTTGTTTCTGCCGCCCATTCAGAAGCCGATCTGATCAAGGCATCAGAGTCGCTGAAAACAGTTGCAGAATCAGTGCTGAAGAATTACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

485

Amino Acids

52.77

Weight (kDa)

6.39

Isoelectric Point (pI)

29.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 111 - 470 5.8e-36 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 605
Acc36I ACCTGC 1 cut(s) 1257
AciI CCGC 5 cut(s) 108, 903, 960, 1304, 1374
AcoI YGGCCR 1 cut(s) 778
AcsI RAATTY 3 cut(s) 31, 772, 896
AcuI CTGAAG 1 cut(s) 1142
AfaI GTAC 3 cut(s) 129, 400, 767
AfiI CCNNNNNNNGG 3 cut(s) 107, 289, 1317
AgsI TTSAA 4 cut(s) 22, 519, 758, 814
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AleI CACNNNNGTG 1 cut(s) 653
AluBI AGCT 4 cut(s) 83, 761, 878, 1255
AluI AGCT 4 cut(s) 83, 761, 878, 1255
Alw26I GTCTC 2 cut(s) 542, 893
AoxI GGCC 4 cut(s) 305, 778, 1168, 1308
ApeKI GCWGC 6 cut(s) 299, 347, 350, 938, 1067, 1252
ApoI RAATTY 3 cut(s) 31, 772, 896
AseI ATTAAT 1 cut(s) 368
Asp700I GAANNNNTTC 3 cut(s) 129, 231, 824
AspS9I GGNCC 2 cut(s) 305, 437
AsuHPI GGTGA 5 cut(s) 40, 61, 250, 995, 1188
AvaII GGWCC 1 cut(s) 437
BalI TGGCCA 1 cut(s) 780
BauI CACGAG 1 cut(s) 441
BbvI GCAGC 6 cut(s) 286, 334, 362, 925, 1054, 1264
BcgI CGANNNNNNTGC 4 cut(s) 1250, 1284, 1392, 1426
BclI TGATCA 2 cut(s) 1000, 1395
BcoDI GTCTC 2 cut(s) 542, 893
BfaI CTAG 2 cut(s) 642, 990
BfmI CTRYAG 3 cut(s) 300, 348, 1250
BfuAI ACCTGC 1 cut(s) 1257
BisI GCNGC 8 cut(s) 300, 348, 351, 939, 960, 1068, 1253, 1374
BlsI GCNGC 8 cut(s) 301, 349, 352, 940, 961, 1069, 1254, 1375
BmcAI AGTACT 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 305, 437
BmiI GGNNCC 3 cut(s) 234, 508, 909
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 3 cut(s) 14, 55, 1412
BmuI ACTGGG 1 cut(s) 278
BplI GAGNNNNNCTC 2 cut(s) 839, 871
BpmI CTGGAG 2 cut(s) 61, 1202
Bpu10I CCTNAGC 1 cut(s) 955
BpuEI CTTGAG 2 cut(s) 410, 1112
BsaI GGTCTC 2 cut(s) 542, 893
BsaWI WCCGGW 1 cut(s) 910
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 289, 1317
Bse118I RCCGGY 1 cut(s) 1345
Bse1I ACTGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 948
BseLI CCNNNNNNNGG 3 cut(s) 107, 289, 1317
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 1 cut(s) 1004
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 2 cut(s) 64, 1109
BseXI GCAGC 6 cut(s) 286, 334, 362, 925, 1054, 1264
BsgI GTGCAG 1 cut(s) 961
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 4 cut(s) 307, 780, 1170, 1310
BsiEI CGRYCG 1 cut(s) 105
BsiSI CCGG 2 cut(s) 911, 1346
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 3 cut(s) 107, 289, 1317
BsmAI GTCTC 2 cut(s) 542, 893
BsmFI GGGAC 1 cut(s) 960
BsnI GGCC 4 cut(s) 307, 780, 1170, 1310
Bso31I GGTCTC 2 cut(s) 542, 893
Bsp143I GATC 6 cut(s) 102, 214, 1000, 1105, 1390, 1395
BspACI CCGC 5 cut(s) 108, 903, 960, 1304, 1374
BspANI GGCC 4 cut(s) 307, 780, 1170, 1310
BspCNI CTCAG 1 cut(s) 1005
BspLI GGNNCC 3 cut(s) 234, 508, 909
BspMAI CTGCAG 3 cut(s) 304, 352, 1254
BspMI ACCTGC 1 cut(s) 1257
BspQI GCTCTTC 1 cut(s) 1262
BspTNI GGTCTC 2 cut(s) 542, 893
BsrDI GCAATG 1 cut(s) 948
BsrFI RCCGGY 1 cut(s) 1345
BsrI ACTGG 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 1345
BssMI GATC 6 cut(s) 102, 214, 1000, 1105, 1390, 1395
BssSI CACGAG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 441
Bst4CI ACNGT 4 cut(s) 712, 1277, 1362, 1423
Bst6I CTCTTC 1 cut(s) 1262
BstC8I GCNNGC 2 cut(s) 726, 1183
BstDEI CTNAG 5 cut(s) 183, 729, 793, 955, 1013
BstENI CCTNNNNNAGG 1 cut(s) 1315
BstKTI GATC 6 cut(s) 105, 217, 1003, 1108, 1393, 1398
BstMAI GTCTC 2 cut(s) 542, 893
BstMBI GATC 6 cut(s) 102, 214, 1000, 1105, 1390, 1395
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 5 cut(s) 491, 563, 959, 1067, 1076
BstSFI CTRYAG 3 cut(s) 300, 348, 1250
BstV1I GCAGC 6 cut(s) 286, 334, 362, 925, 1054, 1264
BstXI CCANNNNNNTGG 1 cut(s) 776
BsuRI GGCC 4 cut(s) 307, 780, 1170, 1310
BtsIMutI CAGTG 6 cut(s) 291, 559, 708, 891, 996, 1440
BveI ACCTGC 1 cut(s) 1257
Cac8I GCNNGC 2 cut(s) 726, 1183
Cfr10I RCCGGY 1 cut(s) 1345
Cfr13I GGNCC 2 cut(s) 305, 437
CseI GACGC 1 cut(s) 750
Csp6I GTAC 3 cut(s) 128, 399, 766
CspCI CAANNNNNGTGG 2 cut(s) 458, 493
CviAII CATG 6 cut(s) 377, 396, 432, 547, 676, 1452
CviQI GTAC 3 cut(s) 128, 399, 766
DdeI CTNAG 5 cut(s) 183, 729, 793, 955, 1013
DpnI GATC 6 cut(s) 104, 216, 1002, 1107, 1392, 1397
DpnII GATC 6 cut(s) 102, 214, 1000, 1105, 1390, 1395
DrdI GACNNNNNNGTC 1 cut(s) 605
DseDI GACNNNNNNGTC 1 cut(s) 605
EaeI YGGCCR 1 cut(s) 778
Eam1104I CTCTTC 1 cut(s) 1262
EarI CTCTTC 1 cut(s) 1262
EciI GGCGGA 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 1170
Eco31I GGTCTC 2 cut(s) 542, 893
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 1142
EcoNI CCTNNNNNAGG 1 cut(s) 1315
EcoRI GAATTC 2 cut(s) 31, 772
EcoRV GATATC 1 cut(s) 586
FaeI CATG 6 cut(s) 380, 399, 435, 550, 679, 1455
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 679, 711
FaqI GGGAC 1 cut(s) 960
FatI CATG 6 cut(s) 376, 395, 431, 546, 675, 1451
FauI CCCGC 1 cut(s) 896
FbaI TGATCA 2 cut(s) 1000, 1395
Fnu4HI GCNGC 8 cut(s) 300, 348, 351, 939, 960, 1068, 1253, 1374
Fsp4HI GCNGC 8 cut(s) 300, 348, 351, 939, 960, 1068, 1253, 1374
FspBI CTAG 2 cut(s) 642, 990
GluI GCNGC 8 cut(s) 300, 348, 351, 939, 960, 1068, 1253, 1374
GsuI CTGGAG 2 cut(s) 61, 1202
HaeIII GGCC 4 cut(s) 307, 780, 1170, 1310
HapII CCGG 2 cut(s) 911, 1346
HgaI GACGC 1 cut(s) 750
Hin1II CATG 6 cut(s) 380, 399, 435, 550, 679, 1455
HincII GTYRAC 2 cut(s) 916, 1227
HindII GTYRAC 2 cut(s) 916, 1227
HinfI GANTC 8 cut(s) 392, 515, 606, 680, 993, 1193, 1409, 1430
HpaII CCGG 2 cut(s) 911, 1346
HphI GGTGA 5 cut(s) 40, 61, 250, 995, 1188
Hpy166II GTNNAC 6 cut(s) 340, 469, 598, 766, 916, 1227
Hpy188I TCNGA 5 cut(s) 740, 1110, 1384, 1395, 1408
Hpy188III TCNNGA 6 cut(s) 78, 236, 642, 1091, 1190, 1219
Hpy8I GTNNAC 6 cut(s) 340, 469, 598, 766, 916, 1227
Hpy99I CGWCG 1 cut(s) 744
HpyAV CCTTC 4 cut(s) 196, 596, 808, 959
HpyCH4III ACNGT 4 cut(s) 712, 1277, 1362, 1423
HpyCH4IV ACGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 5 cut(s) 491, 563, 959, 1067, 1076
HpyF3I CTNAG 5 cut(s) 183, 729, 793, 955, 1013
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 6 cut(s) 380, 399, 435, 550, 679, 1455
Ksp22I TGATCA 2 cut(s) 1000, 1395
Kzo9I GATC 6 cut(s) 102, 214, 1000, 1105, 1390, 1395
LguI GCTCTTC 1 cut(s) 1262
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 6 cut(s) 286, 334, 362, 925, 1054, 1264
LweI GCATC 3 cut(s) 14, 55, 1412
MaeI CTAG 2 cut(s) 642, 990
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 6 cut(s) 49, 170, 994, 1137, 1162, 1244
MalI GATC 6 cut(s) 104, 216, 1002, 1107, 1392, 1397
MboI GATC 6 cut(s) 102, 214, 1000, 1105, 1390, 1395
MboII GAAGA 4 cut(s) 727, 1135, 1249, 1453
MfeI CAATTG 2 cut(s) 459, 651
MlsI TGGCCA 1 cut(s) 780
MluNI TGGCCA 1 cut(s) 780
MlyI GAGTC 4 cut(s) 401, 615, 1002, 1418
MmeI TCCRAC 3 cut(s) 21, 270, 763
Mox20I TGGCCA 1 cut(s) 780
MroXI GAANNNNTTC 3 cut(s) 129, 231, 824
MscI TGGCCA 1 cut(s) 780
MseI TTAA 6 cut(s) 194, 368, 663, 686, 807, 1283
MslI CAYNNNNRTG 2 cut(s) 593, 653
Msp20I TGGCCA 1 cut(s) 780
MspI CCGG 2 cut(s) 911, 1346
MunI CAATTG 2 cut(s) 459, 651
MwoI GCNNNNNNNGC 5 cut(s) 491, 563, 959, 1067, 1076
NdeII GATC 6 cut(s) 102, 214, 1000, 1105, 1390, 1395
NlaIII CATG 6 cut(s) 380, 399, 435, 550, 679, 1455
NlaIV GGNNCC 3 cut(s) 234, 508, 909
NmuCI GTSAC 3 cut(s) 49, 994, 1244
OliI CACNNNNGTG 1 cut(s) 653
PceI AGGCCT 1 cut(s) 1170
PciSI GCTCTTC 1 cut(s) 1262
PdmI GAANNNNTTC 3 cut(s) 129, 231, 824
PfeI GAWTC 4 cut(s) 515, 680, 1193, 1430
PflFI GACNNNGTC 1 cut(s) 885
PkrI GCNGC 8 cut(s) 301, 349, 352, 940, 961, 1069, 1254, 1375
Ple19I CGATCG 1 cut(s) 105
PleI GAGTC 4 cut(s) 400, 614, 1001, 1417
PpsI GAGTC 4 cut(s) 400, 614, 1001, 1417
PshBI ATTAAT 1 cut(s) 368
PspN4I GGNNCC 3 cut(s) 234, 508, 909
PspPI GGNCC 2 cut(s) 305, 437
PstI CTGCAG 3 cut(s) 304, 352, 1254
PsyI GACNNNGTC 1 cut(s) 885
PvuI CGATCG 1 cut(s) 105
RsaI GTAC 3 cut(s) 129, 400, 767
RsaNI GTAC 3 cut(s) 128, 399, 766
RseI CAYNNNNRTG 2 cut(s) 593, 653
SapI GCTCTTC 1 cut(s) 1262
SaqAI TTAA 6 cut(s) 194, 368, 663, 686, 807, 1283
SatI GCNGC 8 cut(s) 300, 348, 351, 939, 960, 1068, 1253, 1374
Sau3AI GATC 6 cut(s) 102, 214, 1000, 1105, 1390, 1395
Sau96I GGNCC 2 cut(s) 305, 437
ScaI AGTACT 1 cut(s) 129
SchI GAGTC 4 cut(s) 401, 615, 1002, 1418
SfaNI GCATC 3 cut(s) 14, 55, 1412
SfcI CTRYAG 3 cut(s) 300, 348, 1250
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 2 cut(s) 593, 653
SmlI CTYRAG 2 cut(s) 389, 1091
SmoI CTYRAG 2 cut(s) 389, 1091
SseBI AGGCCT 1 cut(s) 1170
SsiI CCGC 5 cut(s) 108, 903, 960, 1304, 1374
SspI AATATT 1 cut(s) 824
SspMI CTAG 2 cut(s) 642, 990
StuI AGGCCT 1 cut(s) 1170
TaaI ACNGT 4 cut(s) 712, 1277, 1362, 1423
TaiI ACGT 1 cut(s) 41
TaqI TCGA 3 cut(s) 8, 1260, 1322
TatI WGTACW 1 cut(s) 127
TauI GCSGC 2 cut(s) 962, 1376
TfiI GAWTC 4 cut(s) 515, 680, 1193, 1430
Tru1I TTAA 6 cut(s) 194, 368, 663, 686, 807, 1283
Tru9I TTAA 6 cut(s) 194, 368, 663, 686, 807, 1283
TscAI CASTG 6 cut(s) 291, 559, 715, 898, 1003, 1440
TseFI GTSAC 3 cut(s) 49, 994, 1244
TseI GCWGC 6 cut(s) 299, 347, 350, 938, 1067, 1252
Tsp45I GTSAC 3 cut(s) 49, 994, 1244
TspDTI ATGAA 3 cut(s) 291, 420, 1130
TspRI CASTG 6 cut(s) 291, 559, 715, 898, 1003, 1440
Tth111I GACNNNGTC 1 cut(s) 885
VpaK11BI GGWCC 1 cut(s) 437
VspI ATTAAT 1 cut(s) 368
XagI CCTNNNNNAGG 1 cut(s) 1315
XapI RAATTY 3 cut(s) 31, 772, 896
XbaI TCTAGA 1 cut(s) 641
XmnI GAANNNNTTC 3 cut(s) 129, 231, 824
XspI CTAG 2 cut(s) 642, 990
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.