RchiOBHm_Chr7g0217761

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004129
Physical Location & Seq
Forward (+)
35703793 .. 35709799
6007 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19489

Sequence Viewer

Length: 654 bp
ATGCTCCCTCCTCCAGAGCTGTTGTTTTTGGAGGTGCCGATTGGCGGACATCTTTTTGTAGAAGTACTTCTTTTTGCAGTCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATGCAGGAGGGAGTGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACATACAATAGTCAATGGCAAAGAAGTAGTGAACTTTGCTTCAGCAAATTATCTTGGATTGATAGGTCATGAGAAGTTGCTTGAGTCATGTACCTCTGCATTGGAGAAATATGGTGTCGGTTCATGTGATCCTCGTGGGTTCTATGGAACAGTTGATGTCCACCTTGATTGTGAGGCAAGAATAGCAAAGTTTTTGGGAACTCCTGACTCAATTCTTTATTCTTATGGTCTCTCCACCATGTTCAGTGCAATTCCAGCATTTTGCAAAAAAGGAGATATCATTGTTGTGGATGAAGGAGTGCATTGGGGAATACAAAATGGTCTTCATCTTTCTAGAAGCACAATTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

217

Amino Acids

23.79

Weight (kDa)

4.58

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 109 - 216 8e-10 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 2 cut(s) 66, 394
AfiI CCNNNNNNNGG 2 cut(s) 44, 283
AleI CACNNNNGTG 1 cut(s) 647
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 1 cut(s) 425
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 293
Asp700I GAANNNNTTC 3 cut(s) 66, 168, 225
AspS9I GGNCC 1 cut(s) 299
BanI GGYRCC 1 cut(s) 34
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BauI CACGAG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 617
BbvI GCAGC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 1 cut(s) 636
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
BmcAI AGTACT 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 3 cut(s) 36, 171, 228
BmrI ACTGGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 536
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 283
Bse1I ACTGG 1 cut(s) 278
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 2 cut(s) 44, 283
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 280
BshFI GGCC 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 34
BslI CCNNNNNNNGG 2 cut(s) 44, 283
BsmAI GTCTC 1 cut(s) 536
BsnI GGCC 1 cut(s) 301
Bso31I GGTCTC 1 cut(s) 536
Bsp143I GATC 2 cut(s) 151, 430
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 301
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 36, 171, 228
BspMAI CTGCAG 1 cut(s) 298
BspPI GGATC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 536
BsrI ACTGG 1 cut(s) 278
BssMI GATC 2 cut(s) 151, 430
BssSI CACGAG 1 cut(s) 435
Bst2BI CACGAG 1 cut(s) 435
Bst4CI ACNGT 1 cut(s) 454
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 598
BstKTI GATC 2 cut(s) 154, 433
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 2 cut(s) 151, 430
BstMWI GCNNNNNNNGC 2 cut(s) 485, 557
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 617
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 598
BtsIMutI CAGTG 2 cut(s) 285, 553
CciI TCATGA 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 2 cut(s) 65, 393
CspCI CAANNNNNGTGG 2 cut(s) 452, 487
CviAII CATG 4 cut(s) 371, 390, 426, 541
CviJI RGCY 4 cut(s) 19, 115, 127, 301
CviKI_1 RGCY 4 cut(s) 19, 115, 127, 301
CviQI GTAC 2 cut(s) 65, 393
DdeI CTNAG 1 cut(s) 120
DpnI GATC 2 cut(s) 153, 432
DpnII GATC 2 cut(s) 151, 430
EciI GGCGGA 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 536
Eco32I GATATC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 327
EcoRV GATATC 1 cut(s) 580
FaeI CATG 4 cut(s) 374, 393, 429, 544
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FatI CATG 4 cut(s) 370, 389, 425, 540
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 1 cut(s) 636
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 4 cut(s) 374, 393, 429, 544
HinfI GANTC 2 cut(s) 386, 509
Hpy166II GTNNAC 2 cut(s) 334, 463
Hpy188III TCNNGA 6 cut(s) 14, 173, 230, 371, 506, 636
Hpy8I GTNNAC 2 cut(s) 334, 463
HpyAV CCTTC 2 cut(s) 133, 590
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4V TGCA 8 cut(s) 77, 206, 265, 296, 401, 551, 567, 604
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 557
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 4 cut(s) 374, 393, 429, 544
Kzo9I GATC 2 cut(s) 151, 430
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 9 cut(s) 27, 113, 186, 192, 243, 282, 291, 519, 570
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 636
MaeIII GTNAC 1 cut(s) 107
MalI GATC 2 cut(s) 153, 432
MboI GATC 2 cut(s) 151, 430
MboII GAAGA 3 cut(s) 212, 269, 617
MfeI CAATTG 1 cut(s) 645
MluCI AATT 4 cut(s) 349, 513, 552, 645
MlyI GAGTC 2 cut(s) 395, 503
MmeI TCCRAC 1 cut(s) 264
MroXI GAANNNNTTC 3 cut(s) 66, 168, 225
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 2 cut(s) 587, 647
MunI CAATTG 1 cut(s) 645
MwoI GCNNNNNNNGC 2 cut(s) 485, 557
NdeII GATC 2 cut(s) 151, 430
NlaIII CATG 4 cut(s) 374, 393, 429, 544
NlaIV GGNNCC 3 cut(s) 36, 171, 228
OliI CACNNNNGTG 1 cut(s) 647
PagI TCATGA 1 cut(s) 370
PdmI GAANNNNTTC 3 cut(s) 66, 168, 225
PkrI GCNGC 1 cut(s) 295
PleI GAGTC 2 cut(s) 394, 503
PpsI GAGTC 2 cut(s) 394, 503
PspN4I GGNNCC 3 cut(s) 36, 171, 228
PspPI GGNCC 1 cut(s) 299
PstI CTGCAG 1 cut(s) 298
RsaI GTAC 2 cut(s) 66, 394
RsaNI GTAC 2 cut(s) 65, 393
RseI CAYNNNNRTG 2 cut(s) 587, 647
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 2 cut(s) 151, 430
Sau96I GGNCC 1 cut(s) 299
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 2 cut(s) 395, 503
SetI ASST 7 cut(s) 21, 36, 181, 238, 370, 398, 468
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 294
SmiMI CAYNNNNRTG 2 cut(s) 587, 647
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 4 cut(s) 349, 513, 552, 645
SsiI CCGC 1 cut(s) 45
SspMI CTAG 1 cut(s) 636
TaaI ACNGT 1 cut(s) 454
TasI AATT 4 cut(s) 349, 513, 552, 645
TatI WGTACW 1 cut(s) 64
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 2 cut(s) 285, 553
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 4 cut(s) 285, 414, 609, 617
TspRI CASTG 2 cut(s) 285, 553
XbaI TCTAGA 1 cut(s) 635
XmnI GAANNNNTTC 3 cut(s) 66, 168, 225
XspI CTAG 1 cut(s) 636
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.