Rh7CG330700

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004129
Physical Location & Seq
Forward (+)
36492661 .. 36496013
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG330700.1

Sequence Viewer

Length: 1017 bp
ATGGCATCGAGTTATGTTTTGAACTTGGTGAATTCTACATTGGATTGGGTGACAGCGACTTTAGATGCTCCCTCCTCCAGAGCTGTTGTTTTTGGAGTGCCGATTGGCGGACATCTTTTTGTAGAAGGACTTCTTTTTGCAGTCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACATACAATAGTCAATGGCAAAGAAGTAGTGAACTTTGCTTCAGCAAATTATCTTGGATTGATAGGTCATGAGAAGTTGCTTGAGTCATGTACCTCTGCATTGGAGAAATATGGTGTTGGTTCATGTGGTCCTCGTGGTATCTATGGAACAATTGATGTCCACCTTGATTGTGAGGCAAGAATAGCAAAGTTTTTGGGAACTCCTGACTCAATTCTCTATTCTTATGGTCTCTCCACCATGTTCAGTGCAATTCCAGCATTTTGCAAAAAAGGAGATATCATTGTTGTGGATGAAGGAGTCCATTGGGGAATACAAAATGGTCTTCATCTTTGTAGAAGCACAATTGTGTATTTCAAGCATAATGACATGGAATCATTAAGGAATACTCTGGAGGAAATCACTCTGAAGAATAAGCGGGCTAAGAAACTCCGGCGCTTTATTGTGGTTGAAGCTGTGTACCAGAATTCTGGCCAAATAGCCCCCTTGGGCGAAATTGTTAAATTGAAGGAGAAATATAGGTTTTGTGCTTTATTAGATGAGAGCAACTCATTTGGTGTCCTTGGAAAAGCTGGACTAGGTCTCACGGAATTTTGCGGGGTTCTGGTTGAAAAGATAGCCTTAGCCACAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTTACTGATCACCAGTTGCTTATCACATGCCTTGCGCTGGCATCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

338

Amino Acids

36.85

Weight (kDa)

5.68

Isoelectric Point (pI)

28.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 111 - 291 4.7e-22 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 108, 724, 903
AcoI YGGCCR 1 cut(s) 778
AcsI RAATTY 3 cut(s) 31, 772, 896
AcuI CTGAAG 2 cut(s) 333, 734
AfaI GTAC 2 cut(s) 400, 767
AfiI CCNNNNNNNGG 3 cut(s) 107, 289, 1003
AgsI TTSAA 5 cut(s) 22, 664, 758, 814, 917
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AleI CACNNNNGTG 1 cut(s) 653
AluBI AGCT 3 cut(s) 83, 761, 878
AluI AGCT 3 cut(s) 83, 761, 878
Alw26I GTCTC 2 cut(s) 542, 893
AoxI GGCC 2 cut(s) 305, 778
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 3 cut(s) 31, 772, 896
Asp700I GAANNNNTTC 2 cut(s) 129, 231
AspLEI GCGC 2 cut(s) 744, 1003
AspS9I GGNCC 2 cut(s) 305, 437
AsuHPI GGTGA 3 cut(s) 40, 61, 968
AvaII GGWCC 1 cut(s) 437
BalI TGGCCA 1 cut(s) 780
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
BauI CACGAG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 623
BbvI GCAGC 1 cut(s) 286
BclI TGATCA 1 cut(s) 973
BcoDI GTCTC 2 cut(s) 542, 893
BfaI CTAG 2 cut(s) 884, 963
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 745
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 305, 437
BmiI GGNNCC 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 14, 55
BmuI ACTGGG 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 623
BplI GAGNNNNNCTC 2 cut(s) 839, 871
BpmI CTGGAG 2 cut(s) 61, 719
Bpu10I CCTNAGC 1 cut(s) 928
BpuEI CTTGAG 1 cut(s) 410
BsaI GGTCTC 2 cut(s) 542, 893
BsaJI CCNNGG 2 cut(s) 792, 868
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 289, 1003
Bse1I ACTGG 3 cut(s) 284, 958, 979
BseDI CCNNGG 2 cut(s) 792, 868
BseGI GGATG 2 cut(s) 604, 1007
BseLI CCNNNNNNNGG 3 cut(s) 107, 289, 1003
BseNI ACTGG 3 cut(s) 284, 958, 979
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 934
BshFI GGCC 2 cut(s) 307, 780
BsiSI CCGG 1 cut(s) 739
BslI CCNNNNNNNGG 3 cut(s) 107, 289, 1003
BsmAI GTCTC 2 cut(s) 542, 893
BsnI GGCC 2 cut(s) 307, 780
Bso31I GGTCTC 2 cut(s) 542, 893
Bsp143I GATC 2 cut(s) 214, 973
BspACI CCGC 3 cut(s) 108, 724, 903
BspANI GGCC 2 cut(s) 307, 780
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 304
BspTNI GGTCTC 2 cut(s) 542, 893
BsrI ACTGG 3 cut(s) 284, 958, 979
BssECI CCNNGG 2 cut(s) 792, 868
BssMI GATC 2 cut(s) 214, 973
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 792, 868
Bst2BI CACGAG 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 726, 1005
BstDEI CTNAG 3 cut(s) 183, 729, 928
BstF5I GGATG 2 cut(s) 604, 1007
BstH2I RGCGCY 1 cut(s) 745
BstHHI GCGC 2 cut(s) 744, 1003
BstKTI GATC 2 cut(s) 217, 976
BstMAI GTCTC 2 cut(s) 542, 893
BstMBI GATC 2 cut(s) 214, 973
BstMWI GCNNNNNNNGC 2 cut(s) 491, 563
BstNSI RCATGY 1 cut(s) 996
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 623
BstXI CCANNNNNNTGG 1 cut(s) 776
BsuRI GGCC 2 cut(s) 307, 780
BtsCI GGATG 2 cut(s) 604, 1007
BtsIMutI CAGTG 3 cut(s) 291, 559, 951
Cac8I GCNNGC 2 cut(s) 726, 1005
CciI TCATGA 1 cut(s) 376
CfoI GCGC 2 cut(s) 744, 1003
Cfr13I GGNCC 2 cut(s) 305, 437
Csp6I GTAC 2 cut(s) 399, 766
CspCI CAANNNNNGTGG 2 cut(s) 458, 493
CviAII CATG 6 cut(s) 377, 396, 432, 547, 676, 993
CviQI GTAC 2 cut(s) 399, 766
DdeI CTNAG 3 cut(s) 183, 729, 928
DpnI GATC 2 cut(s) 216, 975
DpnII GATC 2 cut(s) 214, 973
EaeI YGGCCR 1 cut(s) 778
EciI GGCGGA 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 792, 868
Eco31I GGTCTC 2 cut(s) 542, 893
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 2 cut(s) 333, 734
EcoRI GAATTC 2 cut(s) 31, 772
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 792, 868
ErhI CCWWGG 2 cut(s) 792, 868
FaeI CATG 6 cut(s) 380, 399, 435, 550, 679, 996
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 911, 943
FatI CATG 6 cut(s) 376, 395, 431, 546, 675, 992
FauI CCCGC 2 cut(s) 717, 896
FbaI TGATCA 1 cut(s) 973
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 2 cut(s) 611, 994
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 2 cut(s) 884, 963
GlaI GCGC 2 cut(s) 743, 1002
GluI GCNGC 1 cut(s) 300
GsuI CTGGAG 2 cut(s) 61, 719
HaeII RGCGCY 1 cut(s) 745
HaeIII GGCC 2 cut(s) 307, 780
HapII CCGG 1 cut(s) 739
HhaI GCGC 2 cut(s) 744, 1003
Hin1II CATG 6 cut(s) 380, 399, 435, 550, 679, 996
Hin6I GCGC 2 cut(s) 742, 1001
HinP1I GCGC 2 cut(s) 742, 1001
HinfI GANTC 5 cut(s) 392, 515, 606, 680, 945
HpaII CCGG 1 cut(s) 739
HphI GGTGA 3 cut(s) 40, 61, 968
Hpy166II GTNNAC 3 cut(s) 340, 469, 766
Hpy188I TCNGA 1 cut(s) 714
Hpy188III TCNNGA 6 cut(s) 78, 236, 377, 512, 698, 1014
Hpy8I GTNNAC 3 cut(s) 340, 469, 766
HpyAV CCTTC 5 cut(s) 119, 196, 596, 808, 932
HpyCH4V TGCA 7 cut(s) 140, 271, 302, 407, 557, 573, 951
HpyF10VI GCNNNNNNNGC 2 cut(s) 491, 563
HpyF3I CTNAG 3 cut(s) 183, 729, 928
Hsp92II CATG 6 cut(s) 380, 399, 435, 550, 679, 996
HspAI GCGC 2 cut(s) 742, 1001
Ksp22I TGATCA 1 cut(s) 973
Kzo9I GATC 2 cut(s) 214, 973
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 2 cut(s) 14, 55
MaeI CTAG 2 cut(s) 884, 963
MaeIII GTNAC 3 cut(s) 49, 170, 967
MalI GATC 2 cut(s) 216, 975
MboI GATC 2 cut(s) 214, 973
MboII GAAGA 3 cut(s) 275, 623, 727
MfeI CAATTG 2 cut(s) 459, 651
MlsI TGGCCA 1 cut(s) 780
MluNI TGGCCA 1 cut(s) 780
MlyI GAGTC 3 cut(s) 401, 509, 615
MmeI TCCRAC 1 cut(s) 270
Mox20I TGGCCA 1 cut(s) 780
MroXI GAANNNNTTC 2 cut(s) 129, 231
MscI TGGCCA 1 cut(s) 780
MseI TTAA 3 cut(s) 194, 686, 807
MslI CAYNNNNRTG 2 cut(s) 593, 653
Msp20I TGGCCA 1 cut(s) 780
MspI CCGG 1 cut(s) 739
MunI CAATTG 2 cut(s) 459, 651
MwoI GCNNNNNNNGC 2 cut(s) 491, 563
NdeII GATC 2 cut(s) 214, 973
NlaIII CATG 6 cut(s) 380, 399, 435, 550, 679, 996
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 996
OliI CACNNNNGTG 1 cut(s) 653
PagI TCATGA 1 cut(s) 376
PdmI GAANNNNTTC 2 cut(s) 129, 231
PfeI GAWTC 2 cut(s) 680, 945
PflFI GACNNNGTC 1 cut(s) 885
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 3 cut(s) 400, 509, 614
PpsI GAGTC 3 cut(s) 400, 509, 614
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 305, 437
PstI CTGCAG 1 cut(s) 304
PsyI GACNNNGTC 1 cut(s) 885
RsaI GTAC 2 cut(s) 400, 767
RsaNI GTAC 2 cut(s) 399, 766
RseI CAYNNNNRTG 2 cut(s) 593, 653
SaqAI TTAA 3 cut(s) 194, 686, 807
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 2 cut(s) 214, 973
Sau96I GGNCC 2 cut(s) 305, 437
SchI GAGTC 3 cut(s) 401, 509, 615
SetI ASST 9 cut(s) 85, 244, 376, 404, 474, 763, 830, 880, 889
SfaNI GCATC 2 cut(s) 14, 55
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 2 cut(s) 593, 653
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SsiI CCGC 3 cut(s) 108, 724, 903
SspMI CTAG 2 cut(s) 884, 963
StyI CCWWGG 2 cut(s) 792, 868
TaqI TCGA 1 cut(s) 8
TfiI GAWTC 2 cut(s) 680, 945
Tru1I TTAA 3 cut(s) 194, 686, 807
Tru9I TTAA 3 cut(s) 194, 686, 807
TscAI CASTG 3 cut(s) 291, 559, 958
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 4 cut(s) 291, 420, 615, 623
TspGWI ACGGA 1 cut(s) 908
TspRI CASTG 3 cut(s) 291, 559, 958
Tth111I GACNNNGTC 1 cut(s) 885
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 3 cut(s) 31, 772, 896
XceI RCATGY 1 cut(s) 996
XmnI GAANNNNTTC 2 cut(s) 129, 231
XspI CTAG 2 cut(s) 884, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.