Rmu_sc0011796.1_g000004

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011796.1
OG0004129
Physical Location & Seq
Reverse (-)
8402 .. 12596
4195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011796.1_g000004.1.cds

Sequence Viewer

Length: 1599 bp
atggcatcaaattacgttttgaatttggtgaattctacgttggattgggtgacagcgactttagatgctccctcctccagagctgttgtttttggagtgcccattggcggacatctttttgtagaagtacttctttttgcagtcatcgtttttctactctcccagaaaagttacaagccccctaagaagcctttaacagagaaggaaatagatgatctatgtcaggaatgggttcctgaacctctcatccctcctatcactgaagatatgcagtatgaacccccagtgttggaaagtgctgcagggccacacacaatagttaatggcaaagaagttgtgaactttgctgcagcaaattatcttggattgataggacatgagaagttgcttgagtcatgtacctctgcattggagaaatatggtgttggttcatgtggtcctcgtgggttctatggaacaattgatgtccaccttgattgtgaggcaagaatagcaaagtttttgggaactcctgactcaattctctattcttatggtctctccaccatgttcagtgcaattccagcattttgcaaaaaaggagatatcattgttgtggatgaaggagtccattggggaatacaaaatggtctttatctttctagaagcacaattgtgtatttcaagcataatgacatggaatcattaaggaatactctggaggaaatcactgtgaagagtaagcgggctaagaaactccggcgttacattgtggttgaagctgtttaccagaattctggccaaatagcccccttggacgaaattgttaaattgaaagagaaatataggtttcgtgttttattagatgagagcaactcatttggtgtccttggaagagctggacgaggtctcacagaattttgcggggtgccggttgaaaagatagatattattactgctgcaatgggacacgccttagccacagaaggaggattctgcactggaagtgctagagtcactgatcaccagcgattgagcagttctgggtacgtcttttctgcttctttgcccccttatcttgcgagtgctgccattactgccattgatgttcttgaggagaatcctgatctgttaacgaagttgaagaaaaacattacgttactatggaaaggattgtcaggtgtaatgggcctctcattagcgagcaatccagaatcacccattgtgtttctcaaactacagaagtcaacaggttctgtgaagagtgacctgcaactcctcaacgatattgctgaccgtttgttaaaggatcattcaattcttgcggtagcgtccaaaaggtcgacacttgataaatgccgtttgcctgtgggaattaaactgtttgtttctgctgcccattcagaatcagatctgctcaaggcatcggagtcactgaaaacggttgcagaattagctaacggtgaaacggtagcgtccaaaaggtcgacacttgataaatgccgtttgcctgtgggaattaaactgtttgtttctgctgcccattcagaatcagatctgctcaaggcatcggagtcactgaaaacggttgcagaattagtgctgaagaatcatatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

532

Amino Acids

57.85

Weight (kDa)

6.87

Isoelectric Point (pI)

31.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1257
AccB1I GGYRCC 1 cut(s) 907
AccI GTMKAC 2 cut(s) 1322, 1466
AciI CCGC 4 cut(s) 108, 724, 903, 1304
AclWI GGATC 1 cut(s) 1296
AcoI YGGCCR 1 cut(s) 778
AcsI RAATTY 4 cut(s) 22, 31, 772, 896
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 3 cut(s) 129, 400, 1028
AfiI CCNNNNNNNGG 2 cut(s) 107, 289
AgsI TTSAA 7 cut(s) 22, 664, 758, 814, 917, 1123, 1296
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AleI CACNNNNGTG 1 cut(s) 653
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 4 cut(s) 83, 761, 878, 1436
AluI AGCT 4 cut(s) 83, 761, 878, 1436
Alw26I GTCTC 2 cut(s) 542, 893
AlwI GGATC 1 cut(s) 1296
AlwNI CAGNNNCTG 1 cut(s) 1235
AoxI GGCC 3 cut(s) 305, 778, 1168
ApeKI GCWGC 7 cut(s) 299, 347, 350, 938, 1067, 1373, 1517
ApoI RAATTY 4 cut(s) 22, 31, 772, 896
Asp700I GAANNNNTTC 2 cut(s) 129, 231
AspS9I GGNCC 3 cut(s) 305, 437, 1168
AsuHPI GGTGA 5 cut(s) 40, 61, 995, 1188, 1454
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 102
BalI TGGCCA 1 cut(s) 780
BanI GGYRCC 1 cut(s) 907
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
BauI CACGAG 1 cut(s) 441
BbvI GCAGC 7 cut(s) 286, 334, 362, 925, 1054, 1360, 1504
BceAI ACGGC 2 cut(s) 1323, 1467
BclI TGATCA 1 cut(s) 1000
BcoDI GTCTC 2 cut(s) 542, 893
BfaI CTAG 2 cut(s) 642, 990
BfmI CTRYAG 3 cut(s) 300, 348, 1217
BfuAI ACCTGC 1 cut(s) 1257
BglII AGATCT 2 cut(s) 1390, 1534
BisI GCNGC 7 cut(s) 300, 348, 351, 939, 1068, 1374, 1518
BlsI GCNGC 7 cut(s) 301, 349, 352, 940, 1069, 1375, 1519
BmcAI AGTACT 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 3 cut(s) 305, 437, 1168
BmiI GGNNCC 2 cut(s) 234, 909
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 4 cut(s) 14, 55, 1412, 1556
BmuI ACTGGG 1 cut(s) 278
BplI GAGNNNNNCTC 2 cut(s) 839, 871
BpmI CTGGAG 2 cut(s) 61, 719
Bpu10I CCTNAGC 1 cut(s) 955
BpuEI CTTGAG 4 cut(s) 410, 1112, 1382, 1526
BsaI GGTCTC 2 cut(s) 542, 893
BsaJI CCNNGG 2 cut(s) 792, 868
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 289
Bse118I RCCGGY 1 cut(s) 910
Bse1I ACTGG 2 cut(s) 284, 985
Bse3DI GCAATG 1 cut(s) 948
BseDI CCNNGG 2 cut(s) 792, 868
BseGI GGATG 2 cut(s) 246, 604
BseLI CCNNNNNNNGG 2 cut(s) 107, 289
BseMI GCAATG 1 cut(s) 948
BseNI ACTGG 2 cut(s) 284, 985
BseRI GAGGAG 3 cut(s) 64, 1109, 1247
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 7 cut(s) 286, 334, 362, 925, 1054, 1360, 1504
BsgI GTGCAG 1 cut(s) 961
BshFI GGCC 3 cut(s) 307, 780, 1170
BshNI GGYRCC 1 cut(s) 907
BsiSI CCGG 2 cut(s) 739, 911
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 2 cut(s) 107, 289
BsmAI GTCTC 2 cut(s) 542, 893
BsmFI GGGAC 1 cut(s) 960
BsnI GGCC 3 cut(s) 307, 780, 1170
Bso31I GGTCTC 2 cut(s) 542, 893
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 6 cut(s) 214, 1000, 1105, 1288, 1390, 1534
BspACI CCGC 4 cut(s) 108, 724, 903, 1304
BspANI GGCC 3 cut(s) 307, 780, 1170
BspLI GGNNCC 2 cut(s) 234, 909
BspMAI CTGCAG 2 cut(s) 304, 352
BspMI ACCTGC 1 cut(s) 1257
BspPI GGATC 1 cut(s) 1296
BspQI GCTCTTC 1 cut(s) 868
BspT107I GGYRCC 1 cut(s) 907
BspTNI GGTCTC 2 cut(s) 542, 893
BsrDI GCAATG 1 cut(s) 948
BsrFI RCCGGY 1 cut(s) 910
BsrI ACTGG 2 cut(s) 284, 985
BssAI RCCGGY 1 cut(s) 910
BssECI CCNNGG 2 cut(s) 792, 868
BssMI GATC 6 cut(s) 214, 1000, 1105, 1288, 1390, 1534
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 792, 868
Bst2BI CACGAG 1 cut(s) 441
Bst4CI ACNGT 8 cut(s) 712, 1277, 1362, 1423, 1442, 1450, 1506, 1567
Bst6I CTCTTC 3 cut(s) 710, 868, 1235
BstC8I GCNNGC 2 cut(s) 726, 1183
BstDEI CTNAG 3 cut(s) 183, 729, 955
BstF5I GGATG 2 cut(s) 246, 604
BstKTI GATC 6 cut(s) 217, 1003, 1108, 1291, 1393, 1537
BstMAI GTCTC 2 cut(s) 542, 893
BstMBI GATC 6 cut(s) 214, 1000, 1105, 1288, 1390, 1534
BstMWI GCNNNNNNNGC 5 cut(s) 491, 563, 1067, 1076, 1433
BstSFI CTRYAG 3 cut(s) 300, 348, 1217
BstSLI GKGCMC 1 cut(s) 102
BstV1I GCAGC 7 cut(s) 286, 334, 362, 925, 1054, 1360, 1504
BstX2I RGATCY 2 cut(s) 1390, 1534
BstXI CCANNNNNNTGG 1 cut(s) 776
BstYI RGATCY 2 cut(s) 1390, 1534
BsuRI GGCC 3 cut(s) 307, 780, 1170
BtsCI GGATG 2 cut(s) 246, 604
BtsIMutI CAGTG 8 cut(s) 258, 291, 559, 708, 978, 996, 1412, 1556
BveI ACCTGC 1 cut(s) 1257
Cac8I GCNNGC 2 cut(s) 726, 1183
CaiI CAGNNNCTG 1 cut(s) 1235
Cfr10I RCCGGY 1 cut(s) 910
Cfr13I GGNCC 3 cut(s) 305, 437, 1168
CseI GACGC 2 cut(s) 1299, 1443
Csp6I GTAC 3 cut(s) 128, 399, 1027
CspCI CAANNNNNGTGG 2 cut(s) 458, 493
CviAII CATG 5 cut(s) 377, 396, 432, 547, 676
CviQI GTAC 3 cut(s) 128, 399, 1027
DdeI CTNAG 3 cut(s) 183, 729, 955
DpnI GATC 6 cut(s) 216, 1002, 1107, 1290, 1392, 1536
DpnII GATC 6 cut(s) 214, 1000, 1105, 1288, 1390, 1534
EaeI YGGCCR 1 cut(s) 778
Eam1104I CTCTTC 3 cut(s) 710, 868, 1235
EarI CTCTTC 3 cut(s) 710, 868, 1235
EciI GGCGGA 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 792, 868
Eco31I GGTCTC 2 cut(s) 542, 893
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 282
EcoRI GAATTC 2 cut(s) 31, 772
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 792, 868
ErhI CCWWGG 2 cut(s) 792, 868
FaeI CATG 5 cut(s) 380, 399, 435, 550, 679
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 1 cut(s) 960
FatI CATG 5 cut(s) 376, 395, 431, 546, 675
FauI CCCGC 2 cut(s) 717, 896
FbaI TGATCA 1 cut(s) 1000
FblI GTMKAC 2 cut(s) 1322, 1466
Fnu4HI GCNGC 7 cut(s) 300, 348, 351, 939, 1068, 1374, 1518
FokI GGATG 2 cut(s) 233, 611
Fsp4HI GCNGC 7 cut(s) 300, 348, 351, 939, 1068, 1374, 1518
FspBI CTAG 2 cut(s) 642, 990
GluI GCNGC 7 cut(s) 300, 348, 351, 939, 1068, 1374, 1518
GsuI CTGGAG 2 cut(s) 61, 719
HaeIII GGCC 3 cut(s) 307, 780, 1170
HapII CCGG 2 cut(s) 739, 911
HgaI GACGC 2 cut(s) 1299, 1443
Hin1II CATG 5 cut(s) 380, 399, 435, 550, 679
HincII GTYRAC 4 cut(s) 1113, 1227, 1323, 1467
HindII GTYRAC 4 cut(s) 1113, 1227, 1323, 1467
HpaI GTTAAC 1 cut(s) 1113
HpaII CCGG 2 cut(s) 739, 911
HphI GGTGA 5 cut(s) 40, 61, 995, 1188, 1454
Hpy166II GTNNAC 7 cut(s) 340, 469, 766, 1113, 1227, 1323, 1467
Hpy188I TCNGA 6 cut(s) 1384, 1390, 1408, 1528, 1534, 1552
Hpy188III TCNNGA 9 cut(s) 78, 224, 236, 512, 642, 698, 1091, 1103, 1190
Hpy8I GTNNAC 7 cut(s) 340, 469, 766, 1113, 1227, 1323, 1467
HpyAV CCTTC 3 cut(s) 196, 596, 959
HpyCH4III ACNGT 8 cut(s) 712, 1277, 1362, 1423, 1442, 1450, 1506, 1567
HpyCH4IV ACGT 4 cut(s) 15, 38, 1029, 1136
HpyF10VI GCNNNNNNNGC 5 cut(s) 491, 563, 1067, 1076, 1433
HpyF3I CTNAG 3 cut(s) 183, 729, 955
HpySE526I ACGT 4 cut(s) 15, 38, 1029, 1136
Hsp92II CATG 5 cut(s) 380, 399, 435, 550, 679
Ksp22I TGATCA 1 cut(s) 1000
KspAI GTTAAC 1 cut(s) 1113
Kzo9I GATC 6 cut(s) 214, 1000, 1105, 1288, 1390, 1534
LguI GCTCTTC 1 cut(s) 868
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 7 cut(s) 286, 334, 362, 925, 1054, 1360, 1504
LweI GCATC 4 cut(s) 14, 55, 1412, 1556
MaeI CTAG 2 cut(s) 642, 990
MaeII ACGT 4 cut(s) 15, 38, 1029, 1136
MaeIII GTNAC 8 cut(s) 49, 170, 743, 994, 1137, 1244, 1410, 1554
MalI GATC 6 cut(s) 216, 1002, 1107, 1290, 1392, 1536
MboI GATC 6 cut(s) 214, 1000, 1105, 1288, 1390, 1534
MboII GAAGA 6 cut(s) 275, 727, 885, 1135, 1252, 1597
MfeI CAATTG 2 cut(s) 459, 651
MflI RGATCY 2 cut(s) 1390, 1534
MhlI GDGCHC 1 cut(s) 102
MlsI TGGCCA 1 cut(s) 780
MluNI TGGCCA 1 cut(s) 780
MlyI GAGTC 6 cut(s) 401, 509, 615, 1002, 1418, 1562
MmeI TCCRAC 2 cut(s) 21, 270
Mox20I TGGCCA 1 cut(s) 780
MroXI GAANNNNTTC 2 cut(s) 129, 231
MscI TGGCCA 1 cut(s) 780
MseI TTAA 8 cut(s) 194, 321, 686, 807, 1112, 1283, 1356, 1500
MslI CAYNNNNRTG 2 cut(s) 593, 653
Msp20I TGGCCA 1 cut(s) 780
MspI CCGG 2 cut(s) 739, 911
MunI CAATTG 2 cut(s) 459, 651
MwoI GCNNNNNNNGC 5 cut(s) 491, 563, 1067, 1076, 1433
NdeII GATC 6 cut(s) 214, 1000, 1105, 1288, 1390, 1534
NlaIII CATG 5 cut(s) 380, 399, 435, 550, 679
NlaIV GGNNCC 2 cut(s) 234, 909
NmuCI GTSAC 5 cut(s) 49, 994, 1244, 1410, 1554
OliI CACNNNNGTG 1 cut(s) 653
PciSI GCTCTTC 1 cut(s) 868
PdmI GAANNNNTTC 2 cut(s) 129, 231
PfeI GAWTC 7 cut(s) 680, 972, 1099, 1193, 1385, 1529, 1588
PflFI GACNNNGTC 1 cut(s) 885
PkrI GCNGC 7 cut(s) 301, 349, 352, 940, 1069, 1375, 1519
PleI GAGTC 6 cut(s) 400, 509, 614, 1001, 1417, 1561
PpsI GAGTC 6 cut(s) 400, 509, 614, 1001, 1417, 1561
PspN4I GGNNCC 2 cut(s) 234, 909
PspPI GGNCC 3 cut(s) 305, 437, 1168
PstI CTGCAG 2 cut(s) 304, 352
PstNI CAGNNNCTG 1 cut(s) 1235
PsuI RGATCY 2 cut(s) 1390, 1534
PsyI GACNNNGTC 1 cut(s) 885
RsaI GTAC 3 cut(s) 129, 400, 1028
RsaNI GTAC 3 cut(s) 128, 399, 1027
RseI CAYNNNNRTG 2 cut(s) 593, 653
SalI GTCGAC 2 cut(s) 1321, 1465
SapI GCTCTTC 1 cut(s) 868
SaqAI TTAA 8 cut(s) 194, 321, 686, 807, 1112, 1283, 1356, 1500
SatI GCNGC 7 cut(s) 300, 348, 351, 939, 1068, 1374, 1518
Sau3AI GATC 6 cut(s) 214, 1000, 1105, 1288, 1390, 1534
Sau96I GGNCC 3 cut(s) 305, 437, 1168
ScaI AGTACT 1 cut(s) 129
SchI GAGTC 6 cut(s) 401, 509, 615, 1002, 1418, 1562
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 4 cut(s) 14, 55, 1412, 1556
SfcI CTRYAG 3 cut(s) 300, 348, 1217
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 2 cut(s) 593, 653
SmlI CTYRAG 4 cut(s) 389, 1091, 1397, 1541
SmoI CTYRAG 4 cut(s) 389, 1091, 1397, 1541
SsiI CCGC 4 cut(s) 108, 724, 903, 1304
SspMI CTAG 2 cut(s) 642, 990
StyI CCWWGG 2 cut(s) 792, 868
TaaI ACNGT 8 cut(s) 712, 1277, 1362, 1423, 1442, 1450, 1506, 1567
TaiI ACGT 4 cut(s) 18, 41, 1032, 1139
TaqI TCGA 2 cut(s) 1322, 1466
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 7 cut(s) 680, 972, 1099, 1193, 1385, 1529, 1588
Tru1I TTAA 8 cut(s) 194, 321, 686, 807, 1112, 1283, 1356, 1500
Tru9I TTAA 8 cut(s) 194, 321, 686, 807, 1112, 1283, 1356, 1500
TscAI CASTG 8 cut(s) 265, 291, 559, 715, 985, 1003, 1419, 1563
TseFI GTSAC 5 cut(s) 49, 994, 1244, 1410, 1554
TseI GCWGC 7 cut(s) 299, 347, 350, 938, 1067, 1373, 1517
Tsp45I GTSAC 5 cut(s) 49, 994, 1244, 1410, 1554
TspDTI ATGAA 3 cut(s) 291, 420, 615
TspRI CASTG 8 cut(s) 265, 291, 559, 715, 985, 1003, 1419, 1563
Tth111I GACNNNGTC 1 cut(s) 885
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 4 cut(s) 22, 31, 772, 896
XbaI TCTAGA 1 cut(s) 641
XmiI GTMKAC 2 cut(s) 1322, 1466
XmnI GAANNNNTTC 2 cut(s) 129, 231
XspI CTAG 2 cut(s) 642, 990
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.