Rroxscaffold_3G00241690

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004129
Physical Location & Seq
Reverse (-)
33898752 .. 33903650
4899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241690.1

Sequence Viewer

Length: 1512 bp
ATGGAAACCATAGCGTTGGATGGATCCTCGCGTTTTGTTGATGAGTTATCAAGTAAAATGGAATCGAGTTATGTTTTGAACTTGGTGAATTCTACATTGGATTGGGTGACAGCGACTTTAGATGCTCCCTCCTCCAGAGCTGTTGTTTTTGGAGTGCCGATTGGCGGACATCTTTTTGTAGAAGTACTTCTTTTTGCAGTCATTGTTTTTCTTTTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACATACAATAGTCAATGGCAAAGAAGTAGTGAACTTTGCTTCAGCAAATTATCTTGGATTGATAGGACATGAGAAGTTGCTTGAGTCATGTACGTCTGCATTGGAGAAATATGGTGTTGGTTCATGTGGTCCTCGTGGGTTCTATGGAACAATTGATGTCCACCTTGATTGTGAGGCAAGAATAGCAAAGTTTTTGGGAACTCCTGACTCAATTCTCTATTCTTATGGTCTCTCCACCATGTTCAGTGCAATTCCAGCATTTTGCAAAAAAGGAGATATCATTGTTGTGGATGAAGGAGTCCATTGGGGAATACAAAATGGTCTTCATCTTTCTAGAAGCACAATTGTGTATTTCAAGCATAATGACATGGAATCATTAAGGAATACTCTGGAGGAAATCACTCTGAAGAATAAGCGGGCTAAGAAACTCCGGCGCTATATTGTGGTTGAAGCTGTGTACCAGAATTCTGGCCAAATAGCCCCCTTGGGCGAAATTGTTAAATTGAAGGAGAAATATAGGTTTCGTGTTTTATTAGATGAGAGCAACTCATTTGGTGTCCTTGGAAAAGCTGGACGAGGTCTCACGGAATTTTGCGGGGTTCGGGTTGAAAAGATAGATATAATTACTGCTGCAATGGGACACGCCTTAGCCGCAGAAGGAGGATTCTGCACCGGAAGTGCTAGAGTTACTGATCACCAGCGATTGAGCAGTTCTGGGTACGTCTTTTCTGCTTCTTTGCCCCCATATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGAGGAGAACCCTAATCTGATAACGAAGTTGAAGAAAAACATTACGTTACTATGGAAAGGATTGTCGGGTGTAATGGGCCTCTCATTAGCAAGCAATCCAGAATCACCTATTGTGTTTCTCAAACTACAGAAGTCAACAAGTTCTGTGAAGAGTGACCTGCAACTCCTCAACGAAATTGCTGACCGTTTGTTAAAGGATCATTCAATTCTTGCGGTGGCGTCCAAAAGGTCGACACTTGATAAATGTCGTTTGCCCGTGGGAATTAGACTGTTTGTTTCTGCTGCCCATTCCGAATCAGATCTGCTGAAGGCATCAGAGTCACTGAAAACGGTTGCAGAATCAGTGCTGAAGAATCATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

503

Amino Acids

54.95

Weight (kDa)

6.48

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 130 - 490 1.4e-36 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1314
AccI GTMKAC 1 cut(s) 1379
AccII CGCG 1 cut(s) 31
AciI CCGC 5 cut(s) 165, 781, 960, 1017, 1361
AclWI GGATC 3 cut(s) 18, 31, 1353
AcoI YGGCCR 1 cut(s) 835
AcsI RAATTY 3 cut(s) 88, 829, 953
AcuI CTGAAG 3 cut(s) 390, 791, 1475
AcyI GRCGYC 1 cut(s) 1367
AfaI GTAC 4 cut(s) 186, 457, 824, 1085
AfiI CCNNNNNNNGG 2 cut(s) 164, 346
AgsI TTSAA 7 cut(s) 79, 721, 815, 871, 974, 1180, 1353
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AleI CACNNNNGTG 1 cut(s) 710
AluBI AGCT 3 cut(s) 140, 818, 935
AluI AGCT 3 cut(s) 140, 818, 935
Alw26I GTCTC 2 cut(s) 599, 950
AlwI GGATC 3 cut(s) 18, 31, 1353
AoxI GGCC 3 cut(s) 362, 835, 1225
ApeKI GCWGC 4 cut(s) 356, 995, 1124, 1430
ApoI RAATTY 3 cut(s) 88, 829, 953
Asp700I GAANNNNTTC 2 cut(s) 186, 288
AspLEI GCGC 1 cut(s) 801
AspS9I GGNCC 3 cut(s) 362, 494, 1225
AsuHPI GGTGA 4 cut(s) 97, 118, 1052, 1245
AvaII GGWCC 1 cut(s) 494
BalI TGGCCA 1 cut(s) 837
BamHI GGATCC 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 171, 203
BauI CACGAG 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 680
BbvI GCAGC 4 cut(s) 343, 982, 1111, 1417
BccI CCATC 1 cut(s) 14
BclI TGATCA 1 cut(s) 1057
BcoDI GTCTC 2 cut(s) 599, 950
BfaI CTAG 2 cut(s) 699, 1047
BfmI CTRYAG 2 cut(s) 357, 1274
BfoI RGCGCY 1 cut(s) 802
BfuAI ACCTGC 1 cut(s) 1314
BglII AGATCT 1 cut(s) 1447
BisI GCNGC 5 cut(s) 357, 996, 1017, 1125, 1431
BlsI GCNGC 5 cut(s) 358, 997, 1018, 1126, 1432
BmcAI AGTACT 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 494
BmgT120I GGNCC 3 cut(s) 362, 494, 1225
BmiI GGNNCC 2 cut(s) 25, 291
BmrI ACTGGG 1 cut(s) 335
BmsI GCATC 2 cut(s) 112, 1469
BmuI ACTGGG 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 680
BplI GAGNNNNNCTC 2 cut(s) 896, 928
BpmI CTGGAG 2 cut(s) 118, 776
Bpu10I CCTNAGC 1 cut(s) 1012
BpuEI CTTGAG 2 cut(s) 467, 1169
BsaHI GRCGYC 1 cut(s) 1367
BsaI GGTCTC 2 cut(s) 599, 950
BsaJI CCNNGG 3 cut(s) 849, 925, 1404
BsaWI WCCGGW 1 cut(s) 1037
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 346
Bse1I ACTGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 1005
BseDI CCNNGG 3 cut(s) 849, 925, 1404
BseGI GGATG 2 cut(s) 25, 661
BseLI CCNNNNNNNGG 2 cut(s) 164, 346
BseMI GCAATG 1 cut(s) 1005
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 3 cut(s) 121, 1166, 1304
BseXI GCAGC 4 cut(s) 343, 982, 1111, 1417
BsgI GTGCAG 1 cut(s) 1018
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 3 cut(s) 364, 837, 1227
BsiSI CCGG 2 cut(s) 796, 1038
BslFI GGGAC 1 cut(s) 1017
BslI CCNNNNNNNGG 2 cut(s) 164, 346
BsmAI GTCTC 2 cut(s) 599, 950
BsmFI GGGAC 1 cut(s) 1017
BsnI GGCC 3 cut(s) 364, 837, 1227
Bso31I GGTCTC 2 cut(s) 599, 950
Bsp143I GATC 5 cut(s) 23, 271, 1057, 1345, 1447
BspACI CCGC 5 cut(s) 165, 781, 960, 1017, 1361
BspANI GGCC 3 cut(s) 364, 837, 1227
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 25, 291
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 1314
BspPI GGATC 3 cut(s) 18, 31, 1353
BspTNI GGTCTC 2 cut(s) 599, 950
BsrDI GCAATG 1 cut(s) 1005
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 849, 925, 1404
BssMI GATC 5 cut(s) 23, 271, 1057, 1345, 1447
BssNI GRCGYC 1 cut(s) 1367
BssSI CACGAG 1 cut(s) 498
BssT1I CCWWGG 2 cut(s) 849, 925
Bst2BI CACGAG 1 cut(s) 498
Bst4CI ACNGT 3 cut(s) 1334, 1419, 1480
Bst6I CTCTTC 1 cut(s) 1292
BstACI GRCGYC 1 cut(s) 1367
BstC8I GCNNGC 2 cut(s) 783, 1240
BstDEI CTNAG 3 cut(s) 240, 786, 1012
BstDSI CCRYGG 1 cut(s) 1404
BstF5I GGATG 2 cut(s) 25, 661
BstFNI CGCG 1 cut(s) 31
BstH2I RGCGCY 1 cut(s) 802
BstHHI GCGC 1 cut(s) 801
BstKTI GATC 5 cut(s) 26, 274, 1060, 1348, 1450
BstMAI GTCTC 2 cut(s) 599, 950
BstMBI GATC 5 cut(s) 23, 271, 1057, 1345, 1447
BstMWI GCNNNNNNNGC 5 cut(s) 548, 620, 1016, 1124, 1133
BstSFI CTRYAG 2 cut(s) 357, 1274
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 4 cut(s) 343, 982, 1111, 1417
BstV2I GAAGAC 1 cut(s) 680
BstX2I RGATCY 2 cut(s) 23, 1447
BstXI CCANNNNNNTGG 2 cut(s) 16, 833
BstYI RGATCY 2 cut(s) 23, 1447
BsuRI GGCC 3 cut(s) 364, 837, 1227
BtgI CCRYGG 1 cut(s) 1404
BtsCI GGATG 2 cut(s) 25, 661
BtsIMutI CAGTG 4 cut(s) 348, 616, 1469, 1497
BveI ACCTGC 1 cut(s) 1314
Cac8I GCNNGC 2 cut(s) 783, 1240
CfoI GCGC 1 cut(s) 801
Cfr13I GGNCC 3 cut(s) 362, 494, 1225
CseI GACGC 1 cut(s) 1356
Csp6I GTAC 4 cut(s) 185, 456, 823, 1084
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CviAII CATG 5 cut(s) 434, 453, 489, 604, 733
CviQI GTAC 4 cut(s) 185, 456, 823, 1084
DdeI CTNAG 3 cut(s) 240, 786, 1012
DpnI GATC 5 cut(s) 25, 273, 1059, 1347, 1449
DpnII GATC 5 cut(s) 23, 271, 1057, 1345, 1447
EaeI YGGCCR 1 cut(s) 835
Eam1104I CTCTTC 1 cut(s) 1292
EarI CTCTTC 1 cut(s) 1292
EciI GGCGGA 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 849, 925
Eco31I GGTCTC 2 cut(s) 599, 950
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 494
Eco57I CTGAAG 3 cut(s) 390, 791, 1475
EcoRI GAATTC 2 cut(s) 88, 829
EcoRV GATATC 1 cut(s) 643
EcoT14I CCWWGG 2 cut(s) 849, 925
ErhI CCWWGG 2 cut(s) 849, 925
FaeI CATG 5 cut(s) 437, 456, 492, 607, 736
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 1 cut(s) 1017
FatI CATG 5 cut(s) 433, 452, 488, 603, 732
FauI CCCGC 2 cut(s) 774, 953
FbaI TGATCA 1 cut(s) 1057
FblI GTMKAC 1 cut(s) 1379
Fnu4HI GCNGC 5 cut(s) 357, 996, 1017, 1125, 1431
FokI GGATG 2 cut(s) 32, 668
Fsp4HI GCNGC 5 cut(s) 357, 996, 1017, 1125, 1431
FspBI CTAG 2 cut(s) 699, 1047
GlaI GCGC 1 cut(s) 800
GluI GCNGC 5 cut(s) 357, 996, 1017, 1125, 1431
GsuI CTGGAG 2 cut(s) 118, 776
HaeII RGCGCY 1 cut(s) 802
HaeIII GGCC 3 cut(s) 364, 837, 1227
HapII CCGG 2 cut(s) 796, 1038
HgaI GACGC 1 cut(s) 1356
HhaI GCGC 1 cut(s) 801
Hin1I GRCGYC 1 cut(s) 1367
Hin1II CATG 5 cut(s) 437, 456, 492, 607, 736
Hin6I GCGC 1 cut(s) 799
HinP1I GCGC 1 cut(s) 799
HincII GTYRAC 2 cut(s) 1284, 1380
HindII GTYRAC 2 cut(s) 1284, 1380
HpaII CCGG 2 cut(s) 796, 1038
HphI GGTGA 4 cut(s) 97, 118, 1052, 1245
Hpy166II GTNNAC 5 cut(s) 397, 526, 823, 1284, 1380
Hpy188I TCNGA 5 cut(s) 771, 1167, 1441, 1447, 1465
Hpy188III TCNNGA 7 cut(s) 135, 293, 569, 699, 755, 1148, 1247
Hpy8I GTNNAC 5 cut(s) 397, 526, 823, 1284, 1380
HpyAV CCTTC 5 cut(s) 253, 653, 865, 1016, 1450
HpyCH4III ACNGT 3 cut(s) 1334, 1419, 1480
HpyCH4IV ACGT 3 cut(s) 458, 1086, 1193
HpyF10VI GCNNNNNNNGC 5 cut(s) 548, 620, 1016, 1124, 1133
HpyF3I CTNAG 3 cut(s) 240, 786, 1012
HpySE526I ACGT 3 cut(s) 458, 1086, 1193
Hsp92I GRCGYC 1 cut(s) 1367
Hsp92II CATG 5 cut(s) 437, 456, 492, 607, 736
HspAI GCGC 1 cut(s) 799
Ksp22I TGATCA 1 cut(s) 1057
Kzo9I GATC 5 cut(s) 23, 271, 1057, 1345, 1447
LmnI GCTCC 1 cut(s) 130
Lsp1109I GCAGC 4 cut(s) 343, 982, 1111, 1417
LweI GCATC 2 cut(s) 112, 1469
MaeI CTAG 2 cut(s) 699, 1047
MaeII ACGT 3 cut(s) 458, 1086, 1193
MaeIII GTNAC 6 cut(s) 106, 227, 1051, 1194, 1301, 1467
MalI GATC 5 cut(s) 25, 273, 1059, 1347, 1449
MboI GATC 5 cut(s) 23, 271, 1057, 1345, 1447
MboII GAAGA 6 cut(s) 332, 680, 784, 1192, 1309, 1510
MfeI CAATTG 2 cut(s) 516, 708
MflI RGATCY 2 cut(s) 23, 1447
MlsI TGGCCA 1 cut(s) 837
MluNI TGGCCA 1 cut(s) 837
MlyI GAGTC 4 cut(s) 458, 566, 672, 1475
MmeI TCCRAC 1 cut(s) 327
Mox20I TGGCCA 1 cut(s) 837
MroXI GAANNNNTTC 2 cut(s) 186, 288
MscI TGGCCA 1 cut(s) 837
MseI TTAA 4 cut(s) 251, 743, 864, 1340
MslI CAYNNNNRTG 2 cut(s) 650, 710
Msp20I TGGCCA 1 cut(s) 837
MspI CCGG 2 cut(s) 796, 1038
MunI CAATTG 2 cut(s) 516, 708
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 5 cut(s) 548, 620, 1016, 1124, 1133
NdeII GATC 5 cut(s) 23, 271, 1057, 1345, 1447
NlaIII CATG 5 cut(s) 437, 456, 492, 607, 736
NlaIV GGNNCC 2 cut(s) 25, 291
NmuCI GTSAC 3 cut(s) 106, 1301, 1467
OliI CACNNNNGTG 1 cut(s) 710
PdmI GAANNNNTTC 2 cut(s) 186, 288
PfeI GAWTC 7 cut(s) 62, 737, 1029, 1250, 1442, 1487, 1501
PflFI GACNNNGTC 1 cut(s) 942
PkrI GCNGC 5 cut(s) 358, 997, 1018, 1126, 1432
PleI GAGTC 4 cut(s) 457, 566, 671, 1474
PpsI GAGTC 4 cut(s) 457, 566, 671, 1474
PspN4I GGNNCC 2 cut(s) 25, 291
PspPI GGNCC 3 cut(s) 362, 494, 1225
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 23, 1447
PsyI GACNNNGTC 1 cut(s) 942
RsaI GTAC 4 cut(s) 186, 457, 824, 1085
RsaNI GTAC 4 cut(s) 185, 456, 823, 1084
RseI CAYNNNNRTG 2 cut(s) 650, 710
SalI GTCGAC 1 cut(s) 1378
SaqAI TTAA 4 cut(s) 251, 743, 864, 1340
SatI GCNGC 5 cut(s) 357, 996, 1017, 1125, 1431
Sau3AI GATC 5 cut(s) 23, 271, 1057, 1345, 1447
Sau96I GGNCC 3 cut(s) 362, 494, 1225
ScaI AGTACT 1 cut(s) 186
SchI GAGTC 4 cut(s) 458, 566, 672, 1475
SfaNI GCATC 2 cut(s) 112, 1469
SfcI CTRYAG 2 cut(s) 357, 1274
SinI GGWCC 1 cut(s) 494
SmiMI CAYNNNNRTG 2 cut(s) 650, 710
SmlI CTYRAG 2 cut(s) 446, 1148
SmoI CTYRAG 2 cut(s) 446, 1148
SsiI CCGC 5 cut(s) 165, 781, 960, 1017, 1361
SspMI CTAG 2 cut(s) 699, 1047
StyI CCWWGG 2 cut(s) 849, 925
TaaI ACNGT 3 cut(s) 1334, 1419, 1480
TaiI ACGT 3 cut(s) 461, 1089, 1196
TaqI TCGA 2 cut(s) 65, 1379
TatI WGTACW 1 cut(s) 184
TauI GCSGC 1 cut(s) 1019
TfiI GAWTC 7 cut(s) 62, 737, 1029, 1250, 1442, 1487, 1501
Tru1I TTAA 4 cut(s) 251, 743, 864, 1340
Tru9I TTAA 4 cut(s) 251, 743, 864, 1340
TscAI CASTG 4 cut(s) 348, 616, 1476, 1497
TseFI GTSAC 3 cut(s) 106, 1301, 1467
TseI GCWGC 4 cut(s) 356, 995, 1124, 1430
Tsp45I GTSAC 3 cut(s) 106, 1301, 1467
TspDTI ATGAA 4 cut(s) 348, 477, 672, 680
TspGWI ACGGA 1 cut(s) 965
TspRI CASTG 4 cut(s) 348, 616, 1476, 1497
Tth111I GACNNNGTC 1 cut(s) 942
VpaK11BI GGWCC 1 cut(s) 494
XapI RAATTY 3 cut(s) 88, 829, 953
XbaI TCTAGA 1 cut(s) 698
XmiI GTMKAC 1 cut(s) 1379
XmnI GAANNNNTTC 2 cut(s) 186, 288
XspI CTAG 2 cut(s) 699, 1047
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.