Rh6AG476400

Long chain base biosynthesis protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
65807323 .. 65811868
4546 bp
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UTR
Exon/CDS
Intron
Rh6AG476400.1

Sequence Viewer

Length: 1584 bp
ATGCGGCAAAATTTTTGTCTGCCAACGCAAAGAAGCGACTTGGTTGACCCTGCACCTCATTTTCATAATAGAATCTCATACAAGCGAACCAAGGCGAAGAGGAGGAGAAGAAGAAGAAACCACAACCCTACTACTCCGTTGCTCCGCCGCCGCCTCACTCCATTCAATCTTTCAGGATCCTGGCCGACTTTAGATGCTCCCTCCTCCAGAGCTGTTGTTTTTGGAGTGCCCATTGGCGGACATCTTTTTGTAGAAGTACTTCTTTTTGCAGTCATCGTTTTTCTACTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTCAGGAATGGGTTCCTGAACCTCTCATCCCTCCTATCACTGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACACACAACAGTTAATGGCAAAGAAGTCGTGAACTTTGCTGCAGCAAATTATCTTGGATTGATAGGACATGAGAAGTTGCTTGAGTCATGTACCTCTGCATTGGAGAAATATGGTGTTGGTTCATGTGGTCCTCGTGGGTTCTATGGAACAATTGATGTCCACCTTGATTGTGAGGCAAGAATAGCAAAGTTTTTGGGAACTCCTGACTCAATTCTCTATTCTTATGGTCTCTCCACCATGTTCAGTGCAATTCCAGCATTTTGCAAAAAAGGAGATATCATTGTTGTGGATGAAGGAGTCCATTGGGGAATACAAAATGGTCTTTATCTTTCTAGAAGCACAATTGTGTATTTCAAGCATAATGACATGGAATCATTAAGGAATACTCTGGAGGAAATCACTGTGAAGAGTAAGCGGGCTAAGAAACTCCGGCGTTACATTGTGGTTGAAGCTGTTTACCAGAATTCTGGCCAAATAGCCCCCTTGGACGAAATTGTTAAATTGAAAGAGAAATATAGGTTTCGTGTTTTATTAGATGAGAGCAACTCATTTGGTGTCCTTGGAAGAGCTGGACGAGGTCTCACAGAATTTTGCGGGGTGCCGGTTGAAAAGATAGATATTATTACTGCTGCAATGGGACACGCCTTAGCCGCAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTCACTGATCACCAGCGATTGAGCAGTTCTGGGTACGTCTTTTCTGCTTCTTTGCCCCCTTATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGAGGAGAATCCTGATCTGTTAACGAAGTTGAAGAAAAACATTACGTTACTATGGAAAGGATTGTCAGGTGTAATGGGCCTCTCATTAGCGAGCAATCCAGAATCACCCATTGTGTTTCTCAAACTACAGAAGTCAACAGGTTCTGTGAAGAGTGACCTGCAACTCCTCGACGATATTGCTGACCGTTTGTTAAAGGATCATTCAATTCTTGCGGTGGCGTCCAAAAGGTCGACACTTGATAAATGCCGTTTGCCTGTGGGAATTAAACTGTTTGTTTCTGCTGCCCATTCAGAATCAGATCTGCTCAAGGCATCGGAGTCACTGAAAACGGTTGCAGAATTAGTGCTGAAGAATCATATATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

527

Amino Acids

58.19

Weight (kDa)

9.11

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 154 - 513 5.7e-35 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1386
AccB1I GGYRCC 1 cut(s) 1036
AccI GTMKAC 1 cut(s) 1451
AciI CCGC 9 cut(s) 4, 145, 148, 151, 237, 853, 1032, 1089, 1433
AclWI GGATC 3 cut(s) 171, 184, 1425
AcoI YGGCCR 2 cut(s) 182, 907
AcsI RAATTY 3 cut(s) 10, 901, 1025
AcuI CTGAAG 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 1439
AfaI GTAC 3 cut(s) 258, 529, 1157
AfiI CCNNNNNNNGG 2 cut(s) 236, 418
AgsI TTSAA 7 cut(s) 166, 793, 887, 943, 1046, 1252, 1425
AjnI CCWGG 1 cut(s) 179
AleI CACNNNNGTG 1 cut(s) 782
AloI GAACNNNNNNTCC 2 cut(s) 360, 392
AluBI AGCT 3 cut(s) 212, 890, 1007
AluI AGCT 3 cut(s) 212, 890, 1007
Alw26I GTCTC 2 cut(s) 671, 1022
AlwI GGATC 3 cut(s) 171, 184, 1425
AlwNI CAGNNNCTG 1 cut(s) 1364
AoxI GGCC 4 cut(s) 182, 434, 907, 1297
ApeKI GCWGC 6 cut(s) 428, 476, 479, 1067, 1196, 1502
ApoI RAATTY 3 cut(s) 10, 901, 1025
ArsI GACNNNNNNTTYG 1 cut(s) 33
Asp700I GAANNNNTTC 2 cut(s) 258, 360
AspS9I GGNCC 3 cut(s) 434, 566, 1297
AsuHPI GGTGA 2 cut(s) 1124, 1317
AvaII GGWCC 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 231
BalI TGGCCA 1 cut(s) 909
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 1036
BarI GAAGNNNNNNTAC 2 cut(s) 243, 275
BauI CACGAG 1 cut(s) 570
BbvI GCAGC 6 cut(s) 415, 463, 491, 1054, 1183, 1489
BceAI ACGGC 1 cut(s) 1452
BcgI CGANNNNNNTGC 4 cut(s) 445, 479, 1379, 1413
BciT130I CCWGG 1 cut(s) 181
BclI TGATCA 1 cut(s) 1129
BcoDI GTCTC 2 cut(s) 671, 1022
BfaI CTAG 2 cut(s) 771, 1119
BfmI CTRYAG 3 cut(s) 429, 477, 1346
BfuAI ACCTGC 1 cut(s) 1386
BglII AGATCT 1 cut(s) 1519
BmcAI AGTACT 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 3 cut(s) 434, 566, 1297
BmiI GGNNCC 3 cut(s) 178, 363, 1038
BmrFI CCNGG 1 cut(s) 181
BmrI ACTGGG 1 cut(s) 407
BmsI GCATC 2 cut(s) 184, 1541
BmuI ACTGGG 1 cut(s) 407
BplI GAGNNNNNCTC 2 cut(s) 968, 1000
BpmI CTGGAG 2 cut(s) 190, 848
Bpu10I CCTNAGC 1 cut(s) 1084
BpuEI CTTGAG 3 cut(s) 539, 1241, 1511
BsaHI GRCGYC 1 cut(s) 1439
BsaI GGTCTC 2 cut(s) 671, 1022
BsaJI CCNNGG 3 cut(s) 90, 921, 997
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 418
Bse118I RCCGGY 1 cut(s) 1039
Bse1I ACTGG 2 cut(s) 413, 1114
Bse3DI GCAATG 1 cut(s) 1077
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 3 cut(s) 90, 921, 997
BseGI GGATG 2 cut(s) 375, 733
BseLI CCNNNNNNNGG 2 cut(s) 236, 418
BseMI GCAATG 1 cut(s) 1077
BseNI ACTGG 2 cut(s) 413, 1114
BseRI GAGGAG 5 cut(s) 115, 118, 193, 1238, 1376
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 6 cut(s) 415, 463, 491, 1054, 1183, 1489
BsgI GTGCAG 2 cut(s) 36, 1090
BshFI GGCC 4 cut(s) 184, 436, 909, 1299
BshNI GGYRCC 1 cut(s) 1036
BsiSI CCGG 2 cut(s) 868, 1040
BslFI GGGAC 1 cut(s) 1089
BslI CCNNNNNNNGG 2 cut(s) 236, 418
BsmAI GTCTC 2 cut(s) 671, 1022
BsmFI GGGAC 1 cut(s) 1089
BsnI GGCC 4 cut(s) 184, 436, 909, 1299
Bso31I GGTCTC 2 cut(s) 671, 1022
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 6 cut(s) 176, 343, 1129, 1234, 1417, 1519
BspACI CCGC 9 cut(s) 4, 145, 148, 151, 237, 853, 1032, 1089, 1433
BspANI GGCC 4 cut(s) 184, 436, 909, 1299
BspLI GGNNCC 3 cut(s) 178, 363, 1038
BspMAI CTGCAG 2 cut(s) 433, 481
BspMI ACCTGC 1 cut(s) 1386
BspPI GGATC 3 cut(s) 171, 184, 1425
BspQI GCTCTTC 1 cut(s) 997
BspT107I GGYRCC 1 cut(s) 1036
BspTNI GGTCTC 2 cut(s) 671, 1022
BsrDI GCAATG 1 cut(s) 1077
BsrFI RCCGGY 1 cut(s) 1039
BsrI ACTGG 2 cut(s) 413, 1114
BssAI RCCGGY 1 cut(s) 1039
BssECI CCNNGG 3 cut(s) 90, 921, 997
BssMI GATC 6 cut(s) 176, 343, 1129, 1234, 1417, 1519
BssNI GRCGYC 1 cut(s) 1439
BssSI CACGAG 1 cut(s) 570
BssT1I CCWWGG 3 cut(s) 90, 921, 997
Bst2BI CACGAG 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 5 cut(s) 448, 841, 1406, 1491, 1552
Bst6I CTCTTC 4 cut(s) 92, 839, 997, 1364
BstACI GRCGYC 1 cut(s) 1439
BstC8I GCNNGC 2 cut(s) 855, 1312
BstDEI CTNAG 3 cut(s) 312, 858, 1084
BstF5I GGATG 2 cut(s) 375, 733
BstKTI GATC 6 cut(s) 179, 346, 1132, 1237, 1420, 1522
BstMAI GTCTC 2 cut(s) 671, 1022
BstMBI GATC 6 cut(s) 176, 343, 1129, 1234, 1417, 1519
BstMWI GCNNNNNNNGC 5 cut(s) 620, 692, 1088, 1196, 1205
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstSFI CTRYAG 3 cut(s) 429, 477, 1346
BstSLI GKGCMC 1 cut(s) 231
BstV1I GCAGC 6 cut(s) 415, 463, 491, 1054, 1183, 1489
BstX2I RGATCY 2 cut(s) 176, 1519
BstXI CCANNNNNNTGG 1 cut(s) 905
BstYI RGATCY 2 cut(s) 176, 1519
BsuRI GGCC 4 cut(s) 184, 436, 909, 1299
BtsCI GGATG 2 cut(s) 375, 733
BtsIMutI CAGTG 7 cut(s) 387, 420, 688, 837, 1107, 1125, 1541
BveI ACCTGC 1 cut(s) 1386
Cac8I GCNNGC 2 cut(s) 855, 1312
CaiI CAGNNNCTG 1 cut(s) 1364
Cfr10I RCCGGY 1 cut(s) 1039
Cfr13I GGNCC 3 cut(s) 434, 566, 1297
CseI GACGC 1 cut(s) 1428
Csp6I GTAC 3 cut(s) 257, 528, 1156
CspCI CAANNNNNGTGG 2 cut(s) 587, 622
CviAII CATG 5 cut(s) 506, 525, 561, 676, 805
CviQI GTAC 3 cut(s) 257, 528, 1156
DdeI CTNAG 3 cut(s) 312, 858, 1084
DpnI GATC 6 cut(s) 178, 345, 1131, 1236, 1419, 1521
DpnII GATC 6 cut(s) 176, 343, 1129, 1234, 1417, 1519
EaeI YGGCCR 2 cut(s) 182, 907
Eam1104I CTCTTC 4 cut(s) 92, 839, 997, 1364
EarI CTCTTC 4 cut(s) 92, 839, 997, 1364
EciI GGCGGA 2 cut(s) 134, 252
Eco130I CCWWGG 3 cut(s) 90, 921, 997
Eco31I GGTCTC 2 cut(s) 671, 1022
Eco32I GATATC 1 cut(s) 715
Eco47I GGWCC 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 901
EcoRII CCWGG 1 cut(s) 179
EcoRV GATATC 1 cut(s) 715
EcoT14I CCWWGG 3 cut(s) 90, 921, 997
ErhI CCWWGG 3 cut(s) 90, 921, 997
FaeI CATG 5 cut(s) 509, 528, 564, 679, 808
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 1089
FatI CATG 5 cut(s) 505, 524, 560, 675, 804
FauI CCCGC 2 cut(s) 846, 1025
FbaI TGATCA 1 cut(s) 1129
FblI GTMKAC 1 cut(s) 1451
FokI GGATG 2 cut(s) 362, 740
FspBI CTAG 2 cut(s) 771, 1119
GsuI CTGGAG 2 cut(s) 190, 848
HaeIII GGCC 4 cut(s) 184, 436, 909, 1299
HapII CCGG 2 cut(s) 868, 1040
HgaI GACGC 1 cut(s) 1428
Hin1I GRCGYC 1 cut(s) 1439
Hin1II CATG 5 cut(s) 509, 528, 564, 679, 808
HincII GTYRAC 4 cut(s) 46, 1242, 1356, 1452
HindII GTYRAC 4 cut(s) 46, 1242, 1356, 1452
HpaI GTTAAC 1 cut(s) 1242
HpaII CCGG 2 cut(s) 868, 1040
HphI GGTGA 2 cut(s) 1124, 1317
Hpy166II GTNNAC 7 cut(s) 46, 469, 598, 895, 1242, 1356, 1452
Hpy188I TCNGA 3 cut(s) 1513, 1519, 1537
Hpy8I GTNNAC 7 cut(s) 46, 469, 598, 895, 1242, 1356, 1452
Hpy99I CGWCG 1 cut(s) 1394
HpyAV CCTTC 3 cut(s) 325, 725, 1088
HpyCH4III ACNGT 5 cut(s) 448, 841, 1406, 1491, 1552
HpyCH4IV ACGT 2 cut(s) 1158, 1265
HpyF10VI GCNNNNNNNGC 5 cut(s) 620, 692, 1088, 1196, 1205
HpyF3I CTNAG 3 cut(s) 312, 858, 1084
HpySE526I ACGT 2 cut(s) 1158, 1265
Hsp92I GRCGYC 1 cut(s) 1439
Hsp92II CATG 5 cut(s) 509, 528, 564, 679, 808
Ksp22I TGATCA 1 cut(s) 1129
KspAI GTTAAC 1 cut(s) 1242
Kzo9I GATC 6 cut(s) 176, 343, 1129, 1234, 1417, 1519
LguI GCTCTTC 1 cut(s) 997
LmnI GCTCC 2 cut(s) 147, 202
Lsp1109I GCAGC 6 cut(s) 415, 463, 491, 1054, 1183, 1489
LweI GCATC 2 cut(s) 184, 1541
MaeI CTAG 2 cut(s) 771, 1119
MaeII ACGT 2 cut(s) 1158, 1265
MaeIII GTNAC 6 cut(s) 299, 872, 1123, 1266, 1373, 1539
MalI GATC 6 cut(s) 178, 345, 1131, 1236, 1419, 1521
MboI GATC 6 cut(s) 176, 343, 1129, 1234, 1417, 1519
MfeI CAATTG 2 cut(s) 588, 780
MflI RGATCY 2 cut(s) 176, 1519
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 909
MluNI TGGCCA 1 cut(s) 909
MlyI GAGTC 5 cut(s) 530, 638, 744, 1131, 1547
MmeI TCCRAC 1 cut(s) 399
Mox20I TGGCCA 1 cut(s) 909
MroXI GAANNNNTTC 2 cut(s) 258, 360
MscI TGGCCA 1 cut(s) 909
MseI TTAA 7 cut(s) 323, 450, 815, 936, 1241, 1412, 1485
MslI CAYNNNNRTG 2 cut(s) 722, 782
Msp20I TGGCCA 1 cut(s) 909
MspI CCGG 2 cut(s) 868, 1040
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 2 cut(s) 588, 780
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 5 cut(s) 620, 692, 1088, 1196, 1205
NdeII GATC 6 cut(s) 176, 343, 1129, 1234, 1417, 1519
NlaIII CATG 5 cut(s) 509, 528, 564, 679, 808
NlaIV GGNNCC 3 cut(s) 178, 363, 1038
NmuCI GTSAC 3 cut(s) 1123, 1373, 1539
OliI CACNNNNGTG 1 cut(s) 782
PciSI GCTCTTC 1 cut(s) 997
PdmI GAANNNNTTC 2 cut(s) 258, 360
PfeI GAWTC 7 cut(s) 72, 809, 1101, 1228, 1322, 1514, 1573
PflFI GACNNNGTC 1 cut(s) 1014
PleI GAGTC 5 cut(s) 529, 638, 743, 1130, 1546
PpsI GAGTC 5 cut(s) 529, 638, 743, 1130, 1546
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 3 cut(s) 178, 363, 1038
PspPI GGNCC 3 cut(s) 434, 566, 1297
PstI CTGCAG 2 cut(s) 433, 481
PstNI CAGNNNCTG 1 cut(s) 1364
PsuI RGATCY 2 cut(s) 176, 1519
PsyI GACNNNGTC 1 cut(s) 1014
RsaI GTAC 3 cut(s) 258, 529, 1157
RsaNI GTAC 3 cut(s) 257, 528, 1156
RseI CAYNNNNRTG 2 cut(s) 722, 782
SalI GTCGAC 1 cut(s) 1450
SapI GCTCTTC 1 cut(s) 997
SaqAI TTAA 7 cut(s) 323, 450, 815, 936, 1241, 1412, 1485
Sau3AI GATC 6 cut(s) 176, 343, 1129, 1234, 1417, 1519
Sau96I GGNCC 3 cut(s) 434, 566, 1297
ScaI AGTACT 1 cut(s) 258
SchI GAGTC 5 cut(s) 530, 638, 744, 1131, 1547
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 2 cut(s) 184, 1541
SfcI CTRYAG 3 cut(s) 429, 477, 1346
SinI GGWCC 1 cut(s) 566
SmiMI CAYNNNNRTG 2 cut(s) 722, 782
SmlI CTYRAG 3 cut(s) 518, 1220, 1526
SmoI CTYRAG 3 cut(s) 518, 1220, 1526
SsiI CCGC 9 cut(s) 4, 145, 148, 151, 237, 853, 1032, 1089, 1433
SspMI CTAG 2 cut(s) 771, 1119
StyD4I CCNGG 1 cut(s) 179
StyI CCWWGG 3 cut(s) 90, 921, 997
TaaI ACNGT 5 cut(s) 448, 841, 1406, 1491, 1552
TaiI ACGT 2 cut(s) 1161, 1268
TaqI TCGA 2 cut(s) 1389, 1451
TatI WGTACW 1 cut(s) 256
TauI GCSGC 4 cut(s) 7, 150, 153, 1091
TfiI GAWTC 7 cut(s) 72, 809, 1101, 1228, 1322, 1514, 1573
Tru1I TTAA 7 cut(s) 323, 450, 815, 936, 1241, 1412, 1485
Tru9I TTAA 7 cut(s) 323, 450, 815, 936, 1241, 1412, 1485
TscAI CASTG 7 cut(s) 394, 420, 688, 844, 1114, 1132, 1548
TseFI GTSAC 3 cut(s) 1123, 1373, 1539
TseI GCWGC 6 cut(s) 428, 476, 479, 1067, 1196, 1502
Tsp45I GTSAC 3 cut(s) 1123, 1373, 1539
TspDTI ATGAA 4 cut(s) 53, 420, 549, 744
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 7 cut(s) 394, 420, 688, 844, 1114, 1132, 1548
Tth111I GACNNNGTC 1 cut(s) 1014
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 3 cut(s) 10, 901, 1025
XbaI TCTAGA 1 cut(s) 770
XmiI GTMKAC 1 cut(s) 1451
XmnI GAANNNNTTC 2 cut(s) 258, 360
XspI CTAG 2 cut(s) 771, 1119
ZrmI AGTACT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.