Rroxscaffold_7G00160130

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004129
Physical Location & Seq
Forward (+)
3138577 .. 3143410
4834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160130.1

Sequence Viewer

Length: 1455 bp
ATGGCATCGAATTATGTGTTGAATTTGGTGAATTCTACGTTGGATTGGGTGACAGCGACTTTAGATGCTCCCTCCTCCAGAGCTGTTGTTTTTGGAGTGCCCATTGGCGGACATCTTTTTGTAGAAGTACTTCTTTTTGCAGTCATCGTTTTTCTACTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTCAGGAATGGGTTCCTGAACCTCTCATCCCTCCTATCACTGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACACACAATAGTTAATGGCAAAGAAGTCGTGAACTTTGCTGCAGCAAATTATCTTGGATTGATAGGACATGAGAAGTTGCTTGAGTCATGTACCTCTGCATTGGAGAAATATGGTGTTGGTTCATGTGGTCCTCGTGGGTTCTATGGAACAATTGATGTCCACCTTGATTGTGAGGCAAGAATAGCAAAGTTTTTGGGAACTCCTGACTCAATTCTCTATTCTTATGGTCTCTCCACCATGTTCAGTGCAATTCCAGCATTTTGCAAAAAAGGAGATATCATTGTTGTGGATGAAGGAGTCCATTGGGGAATACAAAATGGTCTTTATCTTTCTAGAAGCACAATTGTGTATTTCAAGCATAATGACATGGAATCATTAAGGAATACTCTGGAGGAAATCACTGTGAAGAGTAAGCGGGCTAAGAAACTCCGGCGTTACATTGTGGTTGAAGCTGTTTACCAGAATTCTGGCCAAATAGCCCCCTTGGACGAAATTGTTAAATTGAAAGAGAAATATAGGTTTCGTGTTTTATTAGATGAGAGCAACTCATTTGGTGTCCTTGGAAGAGCTGGACGAGGTCTCACAGAATTTTGCGGGGTGCCGGTTGAAAAGATAGATATTATTACTGCTGCAATGGGACACGCCTTAGCCACAGAAGGAGGATTCTGCACTGGAAGTGCTAGAGTCACTGATCACCAGCGATTGAGCAGTTCTGGGTACGTTTTTTCTGCTTCTTTGCCCCCTTATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGAGGAGAATCCTGATCTGTTAACGAAGTTGAAGAAAAACATTACGTTACTATGGAAAGGATTGTCAGGTGTATTGGGCCTCTCATTAGCGAGCAATCCAGAATCACCCATTGTGTTTCTCAAACTACAGAAGTCAACAGGTTCTGTGAAGAGTGACCTGCAACTCCTCAACGATATTGCTGACCGTTTGTTAAAGGATCATTCAATTCTTGCGGTGGCGTCCAAAAGGTCGACACTTGATAAATGCCGTTTGCCTGTGGGAATTAAACTGTTTGTTTCTGCTGCCCATTCAGAATCAGATCTGCTCAAGGCATCAGAGTCACTGAAAACGGTTGCGGAATCAGTGCTGAAGAATCATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

484

Amino Acids

52.75

Weight (kDa)

6.61

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 111 - 470 1.5e-34 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1257
AccB1I GGYRCC 1 cut(s) 907
AccI GTMKAC 1 cut(s) 1322
AciI CCGC 5 cut(s) 108, 724, 903, 1304, 1427
AclWI GGATC 1 cut(s) 1296
AcoI YGGCCR 1 cut(s) 778
AcsI RAATTY 4 cut(s) 22, 31, 772, 896
AcuI CTGAAG 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 1310
AfaI GTAC 3 cut(s) 129, 400, 1028
AfiI CCNNNNNNNGG 2 cut(s) 107, 289
AgsI TTSAA 7 cut(s) 22, 664, 758, 814, 917, 1123, 1296
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AleI CACNNNNGTG 1 cut(s) 653
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 3 cut(s) 83, 761, 878
AluI AGCT 3 cut(s) 83, 761, 878
Alw26I GTCTC 2 cut(s) 542, 893
AlwI GGATC 1 cut(s) 1296
AlwNI CAGNNNCTG 1 cut(s) 1235
AoxI GGCC 3 cut(s) 305, 778, 1168
ApeKI GCWGC 6 cut(s) 299, 347, 350, 938, 1067, 1373
ApoI RAATTY 4 cut(s) 22, 31, 772, 896
Asp700I GAANNNNTTC 2 cut(s) 129, 231
AspS9I GGNCC 3 cut(s) 305, 437, 1168
AsuHPI GGTGA 4 cut(s) 40, 61, 995, 1188
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 102
BalI TGGCCA 1 cut(s) 780
BanI GGYRCC 1 cut(s) 907
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
BauI CACGAG 1 cut(s) 441
BbvI GCAGC 6 cut(s) 286, 334, 362, 925, 1054, 1360
BceAI ACGGC 1 cut(s) 1323
BcgI CGANNNNNNTGC 2 cut(s) 316, 350
BclI TGATCA 1 cut(s) 1000
BcoDI GTCTC 2 cut(s) 542, 893
BfaI CTAG 2 cut(s) 642, 990
BfmI CTRYAG 3 cut(s) 300, 348, 1217
BfuAI ACCTGC 1 cut(s) 1257
BglII AGATCT 1 cut(s) 1390
BisI GCNGC 6 cut(s) 300, 348, 351, 939, 1068, 1374
BlsI GCNGC 6 cut(s) 301, 349, 352, 940, 1069, 1375
BmcAI AGTACT 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 3 cut(s) 305, 437, 1168
BmiI GGNNCC 2 cut(s) 234, 909
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 3 cut(s) 14, 55, 1412
BmuI ACTGGG 1 cut(s) 278
BplI GAGNNNNNCTC 2 cut(s) 839, 871
BpmI CTGGAG 2 cut(s) 61, 719
Bpu10I CCTNAGC 1 cut(s) 955
BpuEI CTTGAG 3 cut(s) 410, 1112, 1382
BsaHI GRCGYC 1 cut(s) 1310
BsaI GGTCTC 2 cut(s) 542, 893
BsaJI CCNNGG 2 cut(s) 792, 868
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 289
Bse118I RCCGGY 1 cut(s) 910
Bse1I ACTGG 2 cut(s) 284, 985
Bse3DI GCAATG 1 cut(s) 948
BseDI CCNNGG 2 cut(s) 792, 868
BseGI GGATG 2 cut(s) 246, 604
BseLI CCNNNNNNNGG 2 cut(s) 107, 289
BseMI GCAATG 1 cut(s) 948
BseNI ACTGG 2 cut(s) 284, 985
BseRI GAGGAG 3 cut(s) 64, 1109, 1247
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 6 cut(s) 286, 334, 362, 925, 1054, 1360
BsgI GTGCAG 1 cut(s) 961
BshFI GGCC 3 cut(s) 307, 780, 1170
BshNI GGYRCC 1 cut(s) 907
BsiSI CCGG 2 cut(s) 739, 911
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 2 cut(s) 107, 289
BsmAI GTCTC 2 cut(s) 542, 893
BsmFI GGGAC 1 cut(s) 960
BsnI GGCC 3 cut(s) 307, 780, 1170
Bso31I GGTCTC 2 cut(s) 542, 893
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 5 cut(s) 214, 1000, 1105, 1288, 1390
BspACI CCGC 5 cut(s) 108, 724, 903, 1304, 1427
BspANI GGCC 3 cut(s) 307, 780, 1170
BspLI GGNNCC 2 cut(s) 234, 909
BspMAI CTGCAG 2 cut(s) 304, 352
BspMI ACCTGC 1 cut(s) 1257
BspPI GGATC 1 cut(s) 1296
BspQI GCTCTTC 1 cut(s) 868
BspT107I GGYRCC 1 cut(s) 907
BspTNI GGTCTC 2 cut(s) 542, 893
BsrDI GCAATG 1 cut(s) 948
BsrFI RCCGGY 1 cut(s) 910
BsrI ACTGG 2 cut(s) 284, 985
BssAI RCCGGY 1 cut(s) 910
BssECI CCNNGG 2 cut(s) 792, 868
BssMI GATC 5 cut(s) 214, 1000, 1105, 1288, 1390
BssNI GRCGYC 1 cut(s) 1310
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 792, 868
Bst2BI CACGAG 1 cut(s) 441
Bst4CI ACNGT 4 cut(s) 712, 1277, 1362, 1423
Bst6I CTCTTC 3 cut(s) 710, 868, 1235
BstACI GRCGYC 1 cut(s) 1310
BstC8I GCNNGC 2 cut(s) 726, 1183
BstDEI CTNAG 3 cut(s) 183, 729, 955
BstF5I GGATG 2 cut(s) 246, 604
BstKTI GATC 5 cut(s) 217, 1003, 1108, 1291, 1393
BstMAI GTCTC 2 cut(s) 542, 893
BstMBI GATC 5 cut(s) 214, 1000, 1105, 1288, 1390
BstMWI GCNNNNNNNGC 4 cut(s) 491, 563, 1067, 1076
BstSFI CTRYAG 3 cut(s) 300, 348, 1217
BstSLI GKGCMC 1 cut(s) 102
BstV1I GCAGC 6 cut(s) 286, 334, 362, 925, 1054, 1360
BstX2I RGATCY 1 cut(s) 1390
BstXI CCANNNNNNTGG 1 cut(s) 776
BstYI RGATCY 1 cut(s) 1390
BsuRI GGCC 3 cut(s) 307, 780, 1170
BtsCI GGATG 2 cut(s) 246, 604
BtsIMutI CAGTG 8 cut(s) 258, 291, 559, 708, 978, 996, 1412, 1440
BveI ACCTGC 1 cut(s) 1257
Cac8I GCNNGC 2 cut(s) 726, 1183
CaiI CAGNNNCTG 1 cut(s) 1235
Cfr10I RCCGGY 1 cut(s) 910
Cfr13I GGNCC 3 cut(s) 305, 437, 1168
CseI GACGC 1 cut(s) 1299
Csp6I GTAC 3 cut(s) 128, 399, 1027
CspCI CAANNNNNGTGG 2 cut(s) 458, 493
CviAII CATG 5 cut(s) 377, 396, 432, 547, 676
CviQI GTAC 3 cut(s) 128, 399, 1027
DdeI CTNAG 3 cut(s) 183, 729, 955
DpnI GATC 5 cut(s) 216, 1002, 1107, 1290, 1392
DpnII GATC 5 cut(s) 214, 1000, 1105, 1288, 1390
EaeI YGGCCR 1 cut(s) 778
Eam1104I CTCTTC 3 cut(s) 710, 868, 1235
EarI CTCTTC 3 cut(s) 710, 868, 1235
EciI GGCGGA 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 792, 868
Eco31I GGTCTC 2 cut(s) 542, 893
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 282
EcoRI GAATTC 2 cut(s) 31, 772
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 792, 868
ErhI CCWWGG 2 cut(s) 792, 868
FaeI CATG 5 cut(s) 380, 399, 435, 550, 679
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 1 cut(s) 960
FatI CATG 5 cut(s) 376, 395, 431, 546, 675
FauI CCCGC 2 cut(s) 717, 896
FbaI TGATCA 1 cut(s) 1000
FblI GTMKAC 1 cut(s) 1322
Fnu4HI GCNGC 6 cut(s) 300, 348, 351, 939, 1068, 1374
FokI GGATG 2 cut(s) 233, 611
Fsp4HI GCNGC 6 cut(s) 300, 348, 351, 939, 1068, 1374
FspBI CTAG 2 cut(s) 642, 990
GluI GCNGC 6 cut(s) 300, 348, 351, 939, 1068, 1374
GsuI CTGGAG 2 cut(s) 61, 719
HaeIII GGCC 3 cut(s) 307, 780, 1170
HapII CCGG 2 cut(s) 739, 911
HgaI GACGC 1 cut(s) 1299
Hin1I GRCGYC 1 cut(s) 1310
Hin1II CATG 5 cut(s) 380, 399, 435, 550, 679
HincII GTYRAC 3 cut(s) 1113, 1227, 1323
HindII GTYRAC 3 cut(s) 1113, 1227, 1323
HpaI GTTAAC 1 cut(s) 1113
HpaII CCGG 2 cut(s) 739, 911
HphI GGTGA 4 cut(s) 40, 61, 995, 1188
Hpy166II GTNNAC 6 cut(s) 340, 469, 766, 1113, 1227, 1323
Hpy188I TCNGA 3 cut(s) 1384, 1390, 1408
Hpy8I GTNNAC 6 cut(s) 340, 469, 766, 1113, 1227, 1323
HpyAV CCTTC 3 cut(s) 196, 596, 959
HpyCH4III ACNGT 4 cut(s) 712, 1277, 1362, 1423
HpyCH4IV ACGT 3 cut(s) 38, 1029, 1136
HpyF10VI GCNNNNNNNGC 4 cut(s) 491, 563, 1067, 1076
HpyF3I CTNAG 3 cut(s) 183, 729, 955
HpySE526I ACGT 3 cut(s) 38, 1029, 1136
Hsp92I GRCGYC 1 cut(s) 1310
Hsp92II CATG 5 cut(s) 380, 399, 435, 550, 679
Ksp22I TGATCA 1 cut(s) 1000
KspAI GTTAAC 1 cut(s) 1113
Kzo9I GATC 5 cut(s) 214, 1000, 1105, 1288, 1390
LguI GCTCTTC 1 cut(s) 868
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 6 cut(s) 286, 334, 362, 925, 1054, 1360
LweI GCATC 3 cut(s) 14, 55, 1412
MaeI CTAG 2 cut(s) 642, 990
MaeII ACGT 3 cut(s) 38, 1029, 1136
MaeIII GTNAC 7 cut(s) 49, 170, 743, 994, 1137, 1244, 1410
MalI GATC 5 cut(s) 216, 1002, 1107, 1290, 1392
MboI GATC 5 cut(s) 214, 1000, 1105, 1288, 1390
MboII GAAGA 6 cut(s) 275, 727, 885, 1135, 1252, 1453
MfeI CAATTG 2 cut(s) 459, 651
MflI RGATCY 1 cut(s) 1390
MhlI GDGCHC 1 cut(s) 102
MlsI TGGCCA 1 cut(s) 780
MluNI TGGCCA 1 cut(s) 780
MlyI GAGTC 5 cut(s) 401, 509, 615, 1002, 1418
MmeI TCCRAC 2 cut(s) 21, 270
Mox20I TGGCCA 1 cut(s) 780
MroXI GAANNNNTTC 2 cut(s) 129, 231
MscI TGGCCA 1 cut(s) 780
MseI TTAA 7 cut(s) 194, 321, 686, 807, 1112, 1283, 1356
MslI CAYNNNNRTG 2 cut(s) 593, 653
Msp20I TGGCCA 1 cut(s) 780
MspI CCGG 2 cut(s) 739, 911
MunI CAATTG 2 cut(s) 459, 651
MwoI GCNNNNNNNGC 4 cut(s) 491, 563, 1067, 1076
NdeII GATC 5 cut(s) 214, 1000, 1105, 1288, 1390
NlaIII CATG 5 cut(s) 380, 399, 435, 550, 679
NlaIV GGNNCC 2 cut(s) 234, 909
NmuCI GTSAC 4 cut(s) 49, 994, 1244, 1410
OliI CACNNNNGTG 1 cut(s) 653
PciSI GCTCTTC 1 cut(s) 868
PdmI GAANNNNTTC 2 cut(s) 129, 231
PfeI GAWTC 7 cut(s) 680, 972, 1099, 1193, 1385, 1430, 1444
PflFI GACNNNGTC 1 cut(s) 885
PkrI GCNGC 6 cut(s) 301, 349, 352, 940, 1069, 1375
PleI GAGTC 5 cut(s) 400, 509, 614, 1001, 1417
PpsI GAGTC 5 cut(s) 400, 509, 614, 1001, 1417
PspN4I GGNNCC 2 cut(s) 234, 909
PspPI GGNCC 3 cut(s) 305, 437, 1168
PstI CTGCAG 2 cut(s) 304, 352
PstNI CAGNNNCTG 1 cut(s) 1235
PsuI RGATCY 1 cut(s) 1390
PsyI GACNNNGTC 1 cut(s) 885
RsaI GTAC 3 cut(s) 129, 400, 1028
RsaNI GTAC 3 cut(s) 128, 399, 1027
RseI CAYNNNNRTG 2 cut(s) 593, 653
SalI GTCGAC 1 cut(s) 1321
SapI GCTCTTC 1 cut(s) 868
SaqAI TTAA 7 cut(s) 194, 321, 686, 807, 1112, 1283, 1356
SatI GCNGC 6 cut(s) 300, 348, 351, 939, 1068, 1374
Sau3AI GATC 5 cut(s) 214, 1000, 1105, 1288, 1390
Sau96I GGNCC 3 cut(s) 305, 437, 1168
ScaI AGTACT 1 cut(s) 129
SchI GAGTC 5 cut(s) 401, 509, 615, 1002, 1418
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 3 cut(s) 14, 55, 1412
SfcI CTRYAG 3 cut(s) 300, 348, 1217
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 2 cut(s) 593, 653
SmlI CTYRAG 3 cut(s) 389, 1091, 1397
SmoI CTYRAG 3 cut(s) 389, 1091, 1397
SsiI CCGC 5 cut(s) 108, 724, 903, 1304, 1427
SspMI CTAG 2 cut(s) 642, 990
StyI CCWWGG 2 cut(s) 792, 868
TaaI ACNGT 4 cut(s) 712, 1277, 1362, 1423
TaiI ACGT 3 cut(s) 41, 1032, 1139
TaqI TCGA 2 cut(s) 8, 1322
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 7 cut(s) 680, 972, 1099, 1193, 1385, 1430, 1444
Tru1I TTAA 7 cut(s) 194, 321, 686, 807, 1112, 1283, 1356
Tru9I TTAA 7 cut(s) 194, 321, 686, 807, 1112, 1283, 1356
TscAI CASTG 8 cut(s) 265, 291, 559, 715, 985, 1003, 1419, 1440
TseFI GTSAC 4 cut(s) 49, 994, 1244, 1410
TseI GCWGC 6 cut(s) 299, 347, 350, 938, 1067, 1373
Tsp45I GTSAC 4 cut(s) 49, 994, 1244, 1410
TspDTI ATGAA 3 cut(s) 291, 420, 615
TspRI CASTG 8 cut(s) 265, 291, 559, 715, 985, 1003, 1419, 1440
Tth111I GACNNNGTC 1 cut(s) 885
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 4 cut(s) 22, 31, 772, 896
XbaI TCTAGA 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 1322
XmnI GAANNNNTTC 2 cut(s) 129, 231
XspI CTAG 2 cut(s) 642, 990
ZrmI AGTACT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.