Rorug07G0171100

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004129
Physical Location & Seq
Reverse (-)
13905804 .. 13908279
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0171100.1

Sequence Viewer

Length: 732 bp
ATGGAGTCTAAAGATGGTAAAAAGTCTAGCAGTGGTAAATCCTTATTCTACGAAGCACCTATCGGATACAACATTGAAGATGTTCGACCCAACGGTGGAATCAAGAAGTTCAGATCTGCTGCGTACTCCAACGTAGATGATTACCTTCGGAAACAAGCTGCTGAATTGTTGCAAGCTATGAATGGGGGATACTATAAAGAGGACAATATCCCCTGCCAGATTGAAGAGGGTCTCTTCTTGGGTTCTTTTGGTGCTGCAAATGACGAGGAAGAACTAAACAGGTTGAACATTACTCACATTTTGACAGTGGGTAGTGCAATGCCTCCTGCATATCCAAATGATTTTGTCTATAAGGTTTTAAAAGATGGGAACATTCTTCTGTGCTGTGGTGAAATAAGGGCAATGACGGCTTTGCTTCGAAATCTTGATCATTGCATCTCAAGCTATTCATCTGTTATACAAAAATCTGAGATAGAGGATGTAGAGGAATGCTTCAAACTTTTTTCTTTGGAAGAGGCGGCTAAATTTGACGAAGTGACCCTTGCCAATGTGAACAACTTCAAAAAGCGCTCAAAAAGCCAGTCACCTAATGCAATCCACAAAGAATATATAGTGAAGTTGCCCACCAACAGTGGCACTCGTGACTTGAAGAAAGCATTACATAAACTTGGAGCCATTTCCTCGAACAAAATAATGATGATTTCTTCCAAGGAAGCAAGCTGCTTGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

243

Amino Acids

26.95

Weight (kDa)

6.45

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AdoMetDC_leader PF08132 1 - 44 3.1e-23 S-adenosyl-l-methionine decarboxylase leader peptide
DUF1517 PF07466 135 - 233 3.8e-11 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 518
AcsI RAATTY 1 cut(s) 524
AfaI GTAC 1 cut(s) 125
AfeI AGCGCT 1 cut(s) 569
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 6 cut(s) 77, 224, 286, 496, 562, 649
AluBI AGCT 4 cut(s) 158, 176, 444, 720
AluI AGCT 4 cut(s) 158, 176, 444, 720
Alw26I GTCTC 1 cut(s) 236
Aor51HI AGCGCT 1 cut(s) 569
ApeKI GCWGC 4 cut(s) 119, 158, 254, 720
ApoI RAATTY 1 cut(s) 524
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
Asp700I GAANNNNTTC 2 cut(s) 81, 557
AspLEI GCGC 1 cut(s) 570
AsuHPI GGTGA 2 cut(s) 401, 576
AsuII TTCGAA 1 cut(s) 418
BauI CACGAG 1 cut(s) 639
BbvI GCAGC 4 cut(s) 106, 145, 241, 707
BccI CCATC 2 cut(s) 8, 359
BceAI ACGGC 1 cut(s) 423
BciVI GTATCC 2 cut(s) 59, 182
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 571
BfuI GTATCC 2 cut(s) 59, 182
BglII AGATCT 1 cut(s) 113
BisI GCNGC 5 cut(s) 120, 159, 255, 519, 721
BlsI GCNGC 5 cut(s) 121, 160, 256, 520, 722
BmiI GGNNCC 1 cut(s) 673
BmsI GCATC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 424
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 708
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 580
Bse3DI GCAATG 3 cut(s) 324, 408, 430
BseDI CCNNGG 1 cut(s) 708
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMI GCAATG 3 cut(s) 324, 408, 430
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 1 cut(s) 580
BseXI GCAGC 4 cut(s) 106, 145, 241, 707
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 494
Bso31I GGTCTC 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 418
Bsp143I GATC 2 cut(s) 113, 427
BspACI CCGC 1 cut(s) 518
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 673
BspT104I TTCGAA 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 3 cut(s) 324, 408, 430
BsrI ACTGG 1 cut(s) 580
BssECI CCNNGG 1 cut(s) 708
BssMI GATC 2 cut(s) 113, 427
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 639
Bst4CI ACNGT 3 cut(s) 95, 307, 632
Bst6I CTCTTC 3 cut(s) 219, 239, 507
BstBI TTCGAA 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 174, 718
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 2 cut(s) 116, 430
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 113, 427
BstMWI GCNNNNNNNGC 3 cut(s) 407, 441, 576
BstV1I GCAGC 4 cut(s) 106, 145, 241, 707
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuI GTATCC 2 cut(s) 59, 182
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 3 cut(s) 37, 312, 637
Cac8I GCNNGC 2 cut(s) 174, 718
CfoI GCGC 1 cut(s) 570
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 8 cut(s) 158, 176, 410, 444, 521, 579, 674, 720
CviKI_1 RGCY 8 cut(s) 158, 176, 410, 444, 521, 579, 674, 720
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 468
DpnI GATC 2 cut(s) 115, 429
DpnII GATC 2 cut(s) 113, 427
DraI TTTAAA 1 cut(s) 360
Eam1104I CTCTTC 3 cut(s) 219, 239, 507
EarI CTCTTC 3 cut(s) 219, 239, 507
Eco130I CCWWGG 1 cut(s) 708
Eco31I GGTCTC 1 cut(s) 236
Eco47III AGCGCT 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 708
FaiI YATR 9 cut(s) 179, 195, 331, 351, 458, 609, 611, 663, 730
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 5 cut(s) 120, 159, 255, 519, 721
FokI GGATG 1 cut(s) 491
Fsp4HI GCNGC 5 cut(s) 120, 159, 255, 519, 721
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 569
GluI GCNGC 5 cut(s) 120, 159, 255, 519, 721
HaeII RGCGCY 1 cut(s) 571
HhaI GCGC 1 cut(s) 570
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HinfI GANTC 2 cut(s) 5, 99
HphI GGTGA 2 cut(s) 401, 576
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 4 cut(s) 65, 113, 150, 469
Hpy188III TCNNGA 3 cut(s) 103, 425, 641
Hpy8I GTNNAC 1 cut(s) 553
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 3 cut(s) 95, 307, 632
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 6 cut(s) 172, 257, 317, 329, 435, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 407, 441, 576
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 1 cut(s) 132
HspAI GCGC 1 cut(s) 568
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 2 cut(s) 113, 427
LmnI GCTCC 1 cut(s) 671
LpnPI CCDG 5 cut(s) 226, 230, 265, 339, 593
Lsp1109I GCAGC 4 cut(s) 106, 145, 241, 707
LweI GCATC 1 cut(s) 444
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 3 cut(s) 535, 582, 641
MalI GATC 2 cut(s) 115, 429
MboI GATC 2 cut(s) 113, 427
MboII GAAGA 8 cut(s) 89, 226, 236, 281, 368, 524, 661, 696
MflI RGATCY 1 cut(s) 113
MluCI AATT 2 cut(s) 164, 524
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 8 cut(s) 193, 220, 259, 333, 469, 478, 508, 691
MroXI GAANNNNTTC 2 cut(s) 81, 557
MseI TTAA 1 cut(s) 359
Mva1269I GAATGC 1 cut(s) 494
MwoI GCNNNNNNNGC 3 cut(s) 407, 441, 576
NdeII GATC 2 cut(s) 113, 427
NlaIV GGNNCC 1 cut(s) 673
NmuCI GTSAC 3 cut(s) 535, 582, 641
NspV TTCGAA 1 cut(s) 418
PctI GAATGC 1 cut(s) 494
PdmI GAANNNNTTC 2 cut(s) 81, 557
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 5 cut(s) 121, 160, 256, 520, 722
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 673
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 5 cut(s) 120, 159, 255, 519, 721
Sau3AI GATC 2 cut(s) 113, 427
SchI GAGTC 1 cut(s) 14
SfaNI GCATC 1 cut(s) 444
SfuI TTCGAA 1 cut(s) 418
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
Sse9I AATT 2 cut(s) 164, 524
SsiI CCGC 1 cut(s) 518
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 3 cut(s) 95, 307, 632
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 85, 418, 683
TasI AATT 2 cut(s) 164, 524
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 3 cut(s) 37, 312, 637
TseFI GTSAC 3 cut(s) 535, 582, 641
TseI GCWGC 4 cut(s) 119, 158, 254, 720
Tsp45I GTSAC 3 cut(s) 535, 582, 641
TspDTI ATGAA 2 cut(s) 194, 438
TspRI CASTG 3 cut(s) 37, 312, 637
XapI RAATTY 1 cut(s) 524
XmnI GAANNNNTTC 2 cut(s) 81, 557
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.