Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Forward (+)

17442612 .. 17444295

Gene Structure 1684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCGATGATATTTTGCAACACTCTCTACTCTTCTTCTTCTCCATCATATCTCTCGCCGTTAACTTCAAAACCGTCGCGATTCTCAAAGAATCTCAGACCTCGAGCTCAATTCCAGTCCATGGAAGACCACGACGATCACCTCCGCCGAAAATTTATGGAGTTCCCGTATGTGTCACCCACGCGGAAGCAGCTCATGGTTGATCTCATGTCGACGGTGGAGAATCGCCTCCAATCACAACTCCTTCCCTGTAACCTCCCTCCAGATGTACGAAACTTCAATAACCCTAACGGTTCCGCCGAAGCATCTCTTCATATCAGATCCGGCGACAAATCTTCTCCGATTGATTTTGTTATAGGAAGTTGGATACATTGCAAGATCCCAACAGGAGTATCTTTGAATATAACAAGCATCTCTGGATTCTTAAACTCATCAACAAAAGCTCCAAACTTTGTGGTCGAACTAATACAGAGCAGTTCCAAGTCGCTTGTGCTAATCCTTGACCTCCCACATCGTAAAGATCTTGTTCTTAACCCGGATTATCTCAAGGAGTATTACCAAGACACTGCTCTTGATTCTCATCGACAATCTCTCCTTAAGCTACCTGAAGTTAACCCTTATGTGTCTCCTTCTCTCTTTGTCCGTTCTGCTTTCTCTCCTACTGCTTCGATGCTTAAGATTGATGCGGAGGAAGAGGATAAGTTGGAGGAGATATTGAGAGATCATGTTAGTCCAGCTGCTAAGGAGGTTCTCGAGGTTTGGTTGGAGCGGTGTGTGAAGGAAGAAGAAGAGAAGATTGTGGTTGGGGAAGAAGAGAGAATGGAGTTGGAGAGAAGAGATAAAAGCTTTAGAAGGAAGAGCATAGAGGACGATTTGGATTTGCAGTTTCCGAGAATGTTTGGTGAAGAAGTTTCCTCCCGTGTTGTACACGCTATTAAAGAAGCTTTCGGTGTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

319

Amino Acids

36.45

Weight (kDa)

5.71

Isoelectric Point (pI)

65.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	62 - 314	1.1e-118	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AccBSI	CCGCTC	1 cut(s)	769
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	2 cut(s)	79, 184
AciI	CCGC	5 cut(s)	145, 184, 297, 686, 769
AclWI	GGATC	2 cut(s)	315, 373
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	2 cut(s)	270, 927
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflII	CTTAAG	2 cut(s)	596, 674
AgsI	TTSAA	3 cut(s)	69, 280, 400
AluBI	AGCT	7 cut(s)	107, 193, 443, 601, 737, 846, 944
AluI	AGCT	7 cut(s)	107, 193, 443, 601, 737, 846, 944
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	2 cut(s)	315, 373
Ama87I	CYCGRG	2 cut(s)	102, 752
ApeKI	GCWGC	2 cut(s)	190, 737
ApoI	RAATTY	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	3 cut(s)	131, 168, 914
AvaI	CYCGRG	2 cut(s)	102, 752
BaeI	ACNNNNGTAYC	2 cut(s)	375, 408
BanII	GRGCYC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	202, 724
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	1 cut(s)	958
BfrI	CTTAAG	2 cut(s)	596, 674
BfuI	GTATCC	1 cut(s)	360
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	2 cut(s)	191, 738
BlsI	GCNGC	2 cut(s)	192, 739
Bme1390I	CCNGG	1 cut(s)	536
BmeT110I	CYCGRG	2 cut(s)	102, 752
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	4 cut(s)	314, 420, 660, 673
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	120
BsaXI	ACNNNNNCTCC	6 cut(s)	152, 182, 427, 457, 576, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	120
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	722
BseXI	GCAGC	2 cut(s)	202, 724
Bsh1236I	CGCG	2 cut(s)	79, 184
BsiHKAI	GWGCWC	1 cut(s)	109
BsiHKCI	CYCGRG	2 cut(s)	102, 752
BsiSI	CCGG	2 cut(s)	324, 536
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	630
BsoBI	CYCGRG	2 cut(s)	102, 752
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	925
Bsp143I	GATC	6 cut(s)	136, 202, 320, 378, 520, 721
Bsp19I	CCATGG	1 cut(s)	120
Bsp68I	TCGCGA	1 cut(s)	79
BspACI	CCGC	5 cut(s)	145, 184, 297, 686, 769
BspCNI	CTCAG	1 cut(s)	108
BspFNI	CGCG	2 cut(s)	79, 184
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	315, 373
BspQI	GCTCTTC	1 cut(s)	851
BspTI	CTTAAG	2 cut(s)	596, 674
BsrBI	CCGCTC	1 cut(s)	769
BsrDI	GCAATG	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	925
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	6 cut(s)	136, 202, 320, 378, 520, 721
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	3 cut(s)	75, 217, 293
Bst6I	CTCTTC	7 cut(s)	37, 315, 687, 783, 807, 829, 851
BstAFI	CTTAAG	2 cut(s)	596, 674
BstAUI	TGTACA	1 cut(s)	925
BstDEI	CTNAG	2 cut(s)	95, 741
BstDSI	CCRYGG	1 cut(s)	120
BstFNI	CGCG	2 cut(s)	79, 184
BstKTI	GATC	6 cut(s)	139, 205, 323, 381, 523, 724
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	6 cut(s)	136, 202, 320, 378, 520, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	534
BstUI	CGCG	2 cut(s)	79, 184
BstV1I	GCAGC	2 cut(s)	202, 724
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	3 cut(s)	320, 378, 520
BstYI	RGATCY	3 cut(s)	320, 378, 520
BsuI	GTATCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	564
BtuMI	TCGCGA	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	269, 926
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CviAII	CATG	4 cut(s)	121, 196, 208, 725
CviJI	RGCY	7 cut(s)	107, 193, 443, 601, 737, 846, 944
CviKI_1	RGCY	7 cut(s)	107, 193, 443, 601, 737, 846, 944
CviQI	GTAC	2 cut(s)	269, 926
DdeI	CTNAG	2 cut(s)	95, 741
DpnI	GATC	6 cut(s)	138, 204, 322, 380, 522, 723
DpnII	GATC	6 cut(s)	136, 202, 320, 378, 520, 721
Eam1104I	CTCTTC	7 cut(s)	37, 315, 687, 783, 807, 829, 851
EarI	CTCTTC	7 cut(s)	37, 315, 687, 783, 807, 829, 851
EciI	GGCGGA	2 cut(s)	134, 286
Ecl136II	GAGCTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	627
Eco88I	CYCGRG	2 cut(s)	102, 752
EcoICRI	GAGCTC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	4 cut(s)	124, 199, 211, 728
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	4 cut(s)	120, 195, 207, 724
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	191, 738
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	191, 738
FspBI	CTAG	1 cut(s)	958
GluI	GCNGC	2 cut(s)	191, 738
GsuI	CTGGAG	1 cut(s)	246
HapII	CCGG	2 cut(s)	324, 536
Hin1II	CATG	4 cut(s)	124, 199, 211, 728
HincII	GTYRAC	3 cut(s)	63, 213, 613
HindII	GTYRAC	3 cut(s)	63, 213, 613
HindIII	AAGCTT	2 cut(s)	844, 942
HinfI	GANTC	5 cut(s)	81, 91, 223, 420, 575
HpaI	GTTAAC	2 cut(s)	63, 613
HpaII	CCGG	2 cut(s)	324, 536
HphI	GGTGA	3 cut(s)	131, 168, 914
Hpy166II	GTNNAC	4 cut(s)	63, 213, 613, 928
Hpy188I	TCNGA	4 cut(s)	98, 320, 342, 891
Hpy188III	TCNNGA	5 cut(s)	78, 263, 417, 572, 752
Hpy8I	GTNNAC	4 cut(s)	63, 213, 613, 928
Hpy99I	CGWCG	3 cut(s)	79, 137, 217
HpyAV	CCTTC	4 cut(s)	254, 639, 772, 846
HpyCH4III	ACNGT	3 cut(s)	75, 217, 293
HpyCH4V	TGCA	3 cut(s)	18, 375, 883
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	2 cut(s)	95, 741
Hsp92II	CATG	4 cut(s)	124, 199, 211, 728
KspAI	GTTAAC	2 cut(s)	63, 613
Kzo9I	GATC	6 cut(s)	136, 202, 320, 378, 520, 721
LguI	GCTCTTC	1 cut(s)	851
LmnI	GCTCC	2 cut(s)	448, 766
LpnPI	CCDG	9 cut(s)	128, 262, 276, 337, 372, 402, 549, 618, 747
Lsp1109I	GCAGC	2 cut(s)	202, 724
LweI	GCATC	4 cut(s)	314, 420, 660, 673
MaeI	CTAG	1 cut(s)	958
MaeIII	GTNAC	2 cut(s)	174, 251
MalI	GATC	6 cut(s)	138, 204, 322, 380, 522, 723
MbiI	CCGCTC	1 cut(s)	769
MboI	GATC	6 cut(s)	136, 202, 320, 378, 520, 721
MflI	RGATCY	3 cut(s)	320, 378, 520
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	2 cut(s)	110, 152
MmeI	TCCRAC	4 cut(s)	344, 684, 744, 807
MseI	TTAA	7 cut(s)	62, 425, 531, 597, 612, 675, 936
MspA1I	CMGCKG	1 cut(s)	737
MspCI	CTTAAG	2 cut(s)	596, 674
MspI	CCGG	2 cut(s)	324, 536
MspR9I	CCNGG	1 cut(s)	536
MvnI	CGCG	2 cut(s)	79, 184
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	536
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	6 cut(s)	136, 202, 320, 378, 520, 721
NlaIII	CATG	4 cut(s)	124, 199, 211, 728
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	174
NruI	TCGCGA	1 cut(s)	79
PaeR7I	CTCGAG	2 cut(s)	102, 752
PciSI	GCTCTTC	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	5 cut(s)	81, 91, 223, 420, 575
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	192, 739
Psp124BI	GAGCTC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	295
PspXI	VCTCGAGB	1 cut(s)	102
PsuI	RGATCY	3 cut(s)	320, 378, 520
PvuII	CAGCTG	1 cut(s)	737
RruI	TCGCGA	1 cut(s)	79
RsaI	GTAC	2 cut(s)	270, 927
RsaNI	GTAC	2 cut(s)	269, 926
SacI	GAGCTC	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	851
SaqAI	TTAA	7 cut(s)	62, 425, 531, 597, 612, 675, 936
SatI	GCNGC	2 cut(s)	191, 738
Sau3AI	GATC	6 cut(s)	136, 202, 320, 378, 520, 721
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	109
SfaNI	GCATC	4 cut(s)	314, 420, 660, 673
Sfr274I	CTCGAG	2 cut(s)	102, 752
SlaI	CTCGAG	2 cut(s)	102, 752
SmlI	CTYRAG	5 cut(s)	102, 545, 596, 674, 752
SmoI	CTYRAG	5 cut(s)	102, 545, 596, 674, 752
Sse9I	AATT	2 cut(s)	110, 152
SsiI	CCGC	5 cut(s)	145, 184, 297, 686, 769
SspMI	CTAG	1 cut(s)	958
SstI	GAGCTC	1 cut(s)	109
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	3 cut(s)	75, 217, 293
TaqI	TCGA	6 cut(s)	103, 212, 459, 583, 668, 753
TasI	AATT	2 cut(s)	110, 152
TatI	WGTACW	1 cut(s)	925
TfiI	GAWTC	5 cut(s)	81, 91, 223, 420, 575
Tru1I	TTAA	7 cut(s)	62, 425, 531, 597, 612, 675, 936
Tru9I	TTAA	7 cut(s)	62, 425, 531, 597, 612, 675, 936
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	2 cut(s)	190, 737
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	121
Vha464I	CTTAAG	2 cut(s)	596, 674
XapI	RAATTY	1 cut(s)	152
XhoI	CTCGAG	2 cut(s)	102, 752
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.