Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Forward (+)

26133448 .. 26134921

Gene Structure 1474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCCGTCCTCTTCCGCCACATTTTCCAGTGTCCACCACCATCCTCCTCCTCCTCCTCCTCCTCCTCCGCTTCTCTACCTTCATCCAAACCAAGGCCATTCTTCTGCTCCGCATCAGCGTCATCCTCCATGGAGCCGCACCCAACAAAGTTCATGGAGTTCCCCTACGTCTCAACCCCTCACAAGAACCTCATGGTTCATCTTGTGTCCACCGTCGAGACGCGCCTCGCCTCCCACCTCCTTCCTTCAACTCTCCCACCAGACGTACAATACTACCAGAACGACACCGCCACTAACCATGCGTCTCTTCACATCAGATCCGGCCTCCCCTCCTCCCCTATTGATTTCATACTAGGAAGTTGGCTGCACTGTCAGCTACCAACAGGTGGAGCATTGAACATTACAAGTTTTTCATCCTATCTTAACCCATCAACAGATGCACCTAATTTCCTACTCGAGTTGATCCAAAGCAGTCCGACTTCACTAGTCCTCATCCTCGACTTGCCTCCTCGAAAAGACCTTGTTCTCCACCCAGACTACCTCAAAACATTTTATGAGGATACAAAGCTGGACACCCCAAGGCAAAAGCTCGAGAAACTAGCTGAGGTGAAACCTTACTTCTCCTCATCGCTTTACATCCGCAGCGTTGTGTCGCCTACCGCAATTTTGGTTCGTGTAGAAGCAGTAGAGGGAGGGCTAAGCTTAGAGGAGATCATAGAGAACCATATCGGTCCGGTTGCAAAGGAAGTGTTGGGCATCTGGTTGGAACAATGCACTCTTGGGAAGAGAGAAGTAGGGGAGAATGAGAAAGCTGAACTGAAGAAGAGGGATGATTTGGTTAAGAGAAAGACTATTGAGATTGATCTGGGCTCGAATTTTCCTAGATTGTTTGGACCTGACGCTGCAGATCGAGTATTGGGAGCCATTCGTGAAGCTTATAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

315

Amino Acids

34.85

Weight (kDa)

6.37

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	60 - 311	2.3e-120	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccII	CGCG	1 cut(s)	223
AciI	CCGC	7 cut(s)	16, 69, 111, 137, 288, 640, 660
AclWI	GGATC	2 cut(s)	312, 457
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	874
AcuI	CTGAAG	1 cut(s)	839
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	93, 386
AgsI	TTSAA	2 cut(s)	249, 397
AhlI	ACTAGT	1 cut(s)	484
AluBI	AGCT	7 cut(s)	376, 568, 589, 602, 702, 812, 935
AluI	AGCT	7 cut(s)	376, 568, 589, 602, 702, 812, 935
Alw26I	GTCTC	3 cut(s)	175, 212, 309
AlwI	GGATC	2 cut(s)	312, 457
Ama87I	CYCGRG	2 cut(s)	455, 590
AoxI	GGCC	3 cut(s)	3, 95, 322
ApeKI	GCWGC	3 cut(s)	364, 642, 902
ApoI	RAATTY	1 cut(s)	874
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	731, 893
AsuHPI	GGTGA	1 cut(s)	619
AvaI	CYCGRG	2 cut(s)	455, 590
AvaII	GGWCC	2 cut(s)	731, 893
BanII	GRGCYC	1 cut(s)	872
BbvCI	CCTCAGC	1 cut(s)	603
BbvI	GCAGC	3 cut(s)	351, 654, 889
BccI	CCATC	2 cut(s)	49, 436
BciVI	GTATCC	1 cut(s)	553
BcoDI	GTCTC	3 cut(s)	175, 212, 309
BcuI	ACTAGT	1 cut(s)	484
BfaI	CTAG	4 cut(s)	353, 485, 599, 882
BfmI	CTRYAG	1 cut(s)	903
BfuI	GTATCC	1 cut(s)	553
BisI	GCNGC	4 cut(s)	137, 365, 643, 903
BlpI	GCTNAGC	1 cut(s)	698
BlsI	GCNGC	4 cut(s)	138, 366, 644, 904
Bme18I	GGWCC	2 cut(s)	731, 893
BmeT110I	CYCGRG	2 cut(s)	455, 590
BmgT120I	GGNCC	2 cut(s)	731, 893
BmiI	GGNNCC	2 cut(s)	135, 922
BmsI	GCATC	3 cut(s)	122, 427, 765
Bpu10I	CCTNAGC	1 cut(s)	603
Bpu1102I	GCTNAGC	1 cut(s)	698
BsaJI	CCNNGG	3 cut(s)	92, 129, 578
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 386
Bse1I	ACTGG	1 cut(s)	28
BseDI	CCNNGG	3 cut(s)	92, 129, 578
BseGI	GGATG	7 cut(s)	41, 83, 122, 413, 492, 636, 835
BseLI	CCNNNNNNNGG	2 cut(s)	93, 386
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	3 cut(s)	351, 654, 889
BsgI	GTGCAG	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	3 cut(s)	5, 97, 324
BsiHKCI	CYCGRG	2 cut(s)	455, 590
BsiSI	CCGG	2 cut(s)	321, 734
BslI	CCNNNNNNNGG	2 cut(s)	93, 386
BsmAI	GTCTC	3 cut(s)	175, 212, 309
BsmBI	CGTCTC	3 cut(s)	175, 212, 309
BsnI	GGCC	3 cut(s)	5, 97, 324
BsoBI	CYCGRG	2 cut(s)	455, 590
Bsp1286I	GDGCHC	1 cut(s)	872
Bsp143I	GATC	5 cut(s)	317, 462, 711, 862, 907
Bsp1720I	GCTNAGC	1 cut(s)	698
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	7 cut(s)	16, 69, 111, 137, 288, 640, 660
BspANI	GGCC	3 cut(s)	5, 97, 324
BspCNI	CTCAG	1 cut(s)	595
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	135, 922
BspMAI	CTGCAG	1 cut(s)	907
BspPI	GGATC	2 cut(s)	312, 457
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	92, 129, 578
BssMI	GATC	5 cut(s)	317, 462, 711, 862, 907
BssT1I	CCWWGG	3 cut(s)	92, 129, 578
Bst4CI	ACNGT	2 cut(s)	214, 371
Bst6I	CTCTTC	4 cut(s)	17, 312, 779, 818
BstDEI	CTNAG	3 cut(s)	603, 698, 703
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	7 cut(s)	41, 83, 122, 413, 492, 636, 835
BstFNI	CGCG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	5 cut(s)	320, 465, 714, 865, 910
BstMAI	GTCTC	3 cut(s)	175, 212, 309
BstMBI	GATC	5 cut(s)	317, 462, 711, 862, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	903
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	3 cut(s)	351, 654, 889
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	3 cut(s)	5, 97, 324
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	7 cut(s)	41, 83, 122, 413, 492, 636, 835
BtsIMutI	CAGTG	2 cut(s)	35, 367
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	731, 893
CpoI	CGGWCCG	1 cut(s)	731
CseI	GACGC	4 cut(s)	108, 229, 291, 908
Csp6I	GTAC	1 cut(s)	266
CspI	CGGWCCG	1 cut(s)	731
CviAII	CATG	4 cut(s)	130, 154, 193, 299
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	3 cut(s)	603, 698, 703
DpnI	GATC	5 cut(s)	319, 464, 713, 864, 909
DpnII	GATC	5 cut(s)	317, 462, 711, 862, 907
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	17, 312, 779, 818
EarI	CTCTTC	4 cut(s)	17, 312, 779, 818
EciI	GGCGGA	1 cut(s)	5
Eco130I	CCWWGG	3 cut(s)	92, 129, 578
Eco24I	GRGCYC	1 cut(s)	872
Eco47I	GGWCC	2 cut(s)	731, 893
Eco57I	CTGAAG	1 cut(s)	839
Eco88I	CYCGRG	2 cut(s)	455, 590
EcoT14I	CCWWGG	3 cut(s)	92, 129, 578
EcoT38I	GRGCYC	1 cut(s)	872
ErhI	CCWWGG	3 cut(s)	92, 129, 578
Esp3I	CGTCTC	3 cut(s)	175, 212, 309
FaeI	CATG	4 cut(s)	133, 157, 196, 302
FatI	CATG	4 cut(s)	129, 153, 192, 298
Fnu4HI	GCNGC	4 cut(s)	137, 365, 643, 903
FokI	GGATG	7 cut(s)	28, 70, 109, 400, 479, 623, 842
FriOI	GRGCYC	1 cut(s)	872
Fsp4HI	GCNGC	4 cut(s)	137, 365, 643, 903
FspBI	CTAG	4 cut(s)	353, 485, 599, 882
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	4 cut(s)	137, 365, 643, 903
HaeIII	GGCC	3 cut(s)	5, 97, 324
HapII	CCGG	2 cut(s)	321, 734
HgaI	GACGC	4 cut(s)	108, 229, 291, 908
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	4 cut(s)	133, 157, 196, 302
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HindIII	AAGCTT	2 cut(s)	700, 933
HpaII	CCGG	2 cut(s)	321, 734
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	2 cut(s)	35, 210
Hpy188I	TCNGA	2 cut(s)	317, 477
Hpy188III	TCNNGA	3 cut(s)	217, 592, 929
Hpy8I	GTNNAC	2 cut(s)	35, 210
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	90, 251, 255
HpyCH4III	ACNGT	2 cut(s)	214, 371
HpyCH4IV	ACGT	2 cut(s)	168, 264
HpyCH4V	TGCA	5 cut(s)	367, 440, 740, 774, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	3 cut(s)	603, 698, 703
HpySE526I	ACGT	2 cut(s)	168, 264
Hsp92II	CATG	4 cut(s)	133, 157, 196, 302
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	317, 462, 711, 862, 907
LmnI	GCTCC	4 cut(s)	113, 133, 389, 920
Lsp1109I	GCAGC	3 cut(s)	351, 654, 889
LweI	GCATC	3 cut(s)	122, 427, 765
MaeI	CTAG	4 cut(s)	353, 485, 599, 882
MaeII	ACGT	2 cut(s)	168, 264
MalI	GATC	5 cut(s)	319, 464, 713, 864, 909
MboI	GATC	5 cut(s)	317, 462, 711, 862, 907
MboII	GAAGA	6 cut(s)	4, 94, 299, 796, 832, 835
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	872
MluCI	AATT	3 cut(s)	445, 663, 874
MmeI	TCCRAC	2 cut(s)	500, 744
MseI	TTAA	2 cut(s)	423, 840
MspI	CCGG	2 cut(s)	321, 734
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	5 cut(s)	317, 462, 711, 862, 907
NlaIII	CATG	4 cut(s)	133, 157, 196, 302
NlaIV	GGNNCC	2 cut(s)	135, 922
PaeR7I	CTCGAG	2 cut(s)	455, 590
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	4 cut(s)	138, 366, 644, 904
PspN4I	GGNNCC	2 cut(s)	135, 922
PspPI	GGNCC	2 cut(s)	731, 893
PspXI	VCTCGAGB	1 cut(s)	455
PstI	CTGCAG	1 cut(s)	907
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
Rsr2I	CGGWCCG	1 cut(s)	731
RsrII	CGGWCCG	1 cut(s)	731
SaqAI	TTAA	2 cut(s)	423, 840
SatI	GCNGC	4 cut(s)	137, 365, 643, 903
Sau3AI	GATC	5 cut(s)	317, 462, 711, 862, 907
Sau96I	GGNCC	2 cut(s)	731, 893
SduI	GDGCHC	1 cut(s)	872
SfaNI	GCATC	3 cut(s)	122, 427, 765
SfcI	CTRYAG	1 cut(s)	903
Sfr274I	CTCGAG	2 cut(s)	455, 590
SinI	GGWCC	2 cut(s)	731, 893
SlaI	CTCGAG	2 cut(s)	455, 590
SmlI	CTYRAG	2 cut(s)	455, 590
SmoI	CTYRAG	2 cut(s)	455, 590
SpeI	ACTAGT	1 cut(s)	484
Sse9I	AATT	3 cut(s)	445, 663, 874
SsiI	CCGC	7 cut(s)	16, 69, 111, 137, 288, 640, 660
SspMI	CTAG	4 cut(s)	353, 485, 599, 882
StyI	CCWWGG	3 cut(s)	92, 129, 578
TaaI	ACNGT	2 cut(s)	214, 371
TaiI	ACGT	2 cut(s)	171, 267
TaqI	TCGA	7 cut(s)	216, 456, 498, 511, 591, 872, 910
TaqII	GACCGA	1 cut(s)	719
TasI	AATT	3 cut(s)	445, 663, 874
TauI	GCSGC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	423, 840
Tru9I	TTAA	2 cut(s)	423, 840
TscAI	CASTG	2 cut(s)	35, 374
TseI	GCWGC	3 cut(s)	364, 642, 902
TspDTI	ATGAA	5 cut(s)	72, 142, 188, 337, 402
TspRI	CASTG	2 cut(s)	35, 374
Van91I	CCANNNNNTGG	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	731, 893
XapI	RAATTY	1 cut(s)	874
XhoI	CTCGAG	2 cut(s)	455, 590
XspI	CTAG	4 cut(s)	353, 485, 599, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.