Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Reverse (-)

25640584 .. 25642683

Gene Structure 2100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1283600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTGTTATCTTCCCCCACGTCTTACACTCCTCCGCTTTCCCTCGCCCTCCTCCTCTTCCTCCGTCGTCTTCTCCACTTCTCTCCCCGTCCTGCATCCGCGCCTCTTCCGCCTCAGCATCATCTCCCATGGACCCGCACAGCCAAGGGAGCAAAACAAAGTTCATAGACTTCCCCTACGTGTCGGCCCCACACAAGAACCTCATGGTCGATCTTGTATCGACGTTAGAGACGCGCCTTGGCTCGCAGCTCTTGCCTTGTACTCTCCCTCCCGACGTGCAGTACTACCAGAATGAGAGTGGCACCAACCATGCATCCCTCCACATCCGATCGGGCCTCTCCTCCTCCCCTGTTGATTTGATATTAGGAAGTTGGCTGCACTGTGAGCTACCAACAGGTGGAGCACTGAACATTACAAGTCTGTCATCCTATCTCAATCCAACCACAGATGCACCAAACTTCCTACTTGAGCTCATCCAGAGCAGCCCAACATCCCTAGTCCTCATCCTTGACCTTCCTCCAAGAAAAGACCTAGTTCTCCACCCTGACTACCTCCAAACATTTTATCAAGCCACCCAATTGGACACACCCAGGCAAAAGCTTGAGAAACTTGCTGAGGTCAAACCCTACTTCTCTTCATCGCTATACATCCGAAGCGTAGTGTCTCCAACCGCAATTTTGGTTCGGATCGAAGCAGGGAGTGGCGGGGAGGGGAAAGGCTTGGAGGACATTATAGAAAATGATTTGAGTCCCATTGCAAAGGAGGTGCTGGGAATCTGGTTGGATCAATGTGCTTGTGGGGAGAGAGAAGTGGGAGAGGATGAGAGGGAATATTTGAAGAGGAGGGATGATTTGATCAAGAGGAAGACTATTGAGATTGATCTGGGGTCTAATTTTCCAAGATTATTTGGGGCTGATGCTGCAGATAGAGTATTGGGTGCCATTAGAGAAGTTTATAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

322

Amino Acids

35.16

Weight (kDa)

5.51

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	64 - 317	1.2e-122	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	957
AccB1I	GGYRCC	2 cut(s)	302, 938
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccII	CGCG	2 cut(s)	102, 235
AciI	CCGC	6 cut(s)	36, 100, 111, 137, 672, 705
AclWI	GGATC	2 cut(s)	695, 792
AfaI	GTAC	2 cut(s)	262, 284
AfiI	CCNNNNNNNGG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	838
AjiI	CACGTC	2 cut(s)	22, 277
AjnI	CCWGG	1 cut(s)	590
AluBI	AGCT	4 cut(s)	250, 388, 472, 601
AluI	AGCT	4 cut(s)	250, 388, 472, 601
Alw21I	GWGCWC	2 cut(s)	406, 474
Alw26I	GTCTC	2 cut(s)	224, 669
AlwI	GGATC	2 cut(s)	695, 792
AoxI	GGCC	2 cut(s)	186, 334
ApeKI	GCWGC	4 cut(s)	247, 376, 483, 920
AspLEI	GCGC	2 cut(s)	104, 237
AspS9I	GGNCC	3 cut(s)	133, 187, 334
AvaII	GGWCC	1 cut(s)	133
BanI	GGYRCC	2 cut(s)	302, 938
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	2 cut(s)	63, 872
Bbv12I	GWGCWC	2 cut(s)	406, 474
BbvCI	CCTCAGC	2 cut(s)	115, 615
BbvI	GCAGC	4 cut(s)	259, 363, 495, 907
BciT130I	CCWGG	1 cut(s)	592
BclI	TGATCA	1 cut(s)	855
BcoDI	GTCTC	2 cut(s)	224, 669
BfaI	CTAG	2 cut(s)	497, 533
BfmI	CTRYAG	1 cut(s)	921
BisI	GCNGC	4 cut(s)	248, 377, 484, 921
BlsI	GCNGC	4 cut(s)	249, 378, 485, 922
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	592
Bme18I	GGWCC	1 cut(s)	133
BmgBI	CACGTC	2 cut(s)	22, 277
BmgT120I	GGNCC	3 cut(s)	133, 187, 334
BmiI	GGNNCC	4 cut(s)	135, 189, 304, 940
BmrFI	CCNGG	1 cut(s)	592
BmsI	GCATC	5 cut(s)	105, 128, 323, 439, 907
BpiI	GAAGAC	2 cut(s)	63, 872
Bpu10I	CCTNAGC	2 cut(s)	115, 615
BpuEI	CTTGAG	2 cut(s)	488, 623
BsaAI	YACGTR	1 cut(s)	181
BsaJI	CCNNGG	4 cut(s)	129, 145, 238, 590
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	753
BseBI	CCWGG	1 cut(s)	592
BseDI	CCNNGG	4 cut(s)	129, 145, 238, 590
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	2 cut(s)	129, 606
BseRI	GAGGAG	6 cut(s)	22, 42, 45, 331, 334, 856
BseXI	GCAGC	4 cut(s)	259, 363, 495, 907
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	2 cut(s)	299, 362
Bsh1236I	CGCG	2 cut(s)	102, 235
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	188, 336
BshNI	GGYRCC	2 cut(s)	302, 938
BsiEI	CGRYCG	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	406, 474
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	2 cut(s)	224, 669
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	2 cut(s)	188, 336
Bsp1286I	GDGCHC	2 cut(s)	406, 474
Bsp143I	GATC	6 cut(s)	211, 329, 687, 784, 855, 880
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	6 cut(s)	36, 100, 111, 137, 672, 705
BspANI	GGCC	2 cut(s)	188, 336
BspCNI	CTCAG	2 cut(s)	128, 607
BspFNI	CGCG	2 cut(s)	102, 235
BspLI	GGNNCC	4 cut(s)	135, 189, 304, 940
BspMAI	CTGCAG	1 cut(s)	925
BspPI	GGATC	2 cut(s)	695, 792
BspT107I	GGYRCC	2 cut(s)	302, 938
BsrDI	GCAATG	1 cut(s)	753
BssECI	CCNNGG	4 cut(s)	129, 145, 238, 590
BssMI	GATC	6 cut(s)	211, 329, 687, 784, 855, 880
BssT1I	CCWWGG	3 cut(s)	129, 145, 238
Bst2UI	CCWGG	1 cut(s)	592
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	4 cut(s)	63, 112, 640, 833
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	2 cut(s)	115, 615
BstDSI	CCRYGG	1 cut(s)	129
BstFNI	CGCG	2 cut(s)	102, 235
BstHHI	GCGC	2 cut(s)	104, 237
BstKTI	GATC	6 cut(s)	214, 332, 690, 787, 858, 883
BstMAI	GTCTC	2 cut(s)	224, 669
BstMBI	GATC	6 cut(s)	211, 329, 687, 784, 855, 880
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 150, 253, 385, 920
BstNI	CCWGG	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	590
BstSFI	CTRYAG	1 cut(s)	921
BstUI	CGCG	2 cut(s)	102, 235
BstV1I	GCAGC	4 cut(s)	259, 363, 495, 907
BstV2I	GAAGAC	2 cut(s)	63, 872
BstXI	CCANNNNNNTGG	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	188, 336
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	624
BtrI	CACGTC	2 cut(s)	22, 277
BtsIMutI	CAGTG	2 cut(s)	379, 404
Cac8I	GCNNGC	1 cut(s)	245
CfoI	GCGC	2 cut(s)	104, 237
Cfr13I	GGNCC	3 cut(s)	133, 187, 334
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	261, 283
CviAII	CATG	3 cut(s)	130, 205, 311
CviQI	GTAC	2 cut(s)	261, 283
DdeI	CTNAG	2 cut(s)	115, 615
DpnI	GATC	6 cut(s)	213, 331, 689, 786, 857, 882
DpnII	GATC	6 cut(s)	211, 329, 687, 784, 855, 880
Eam1104I	CTCTTC	4 cut(s)	63, 112, 640, 833
EarI	CTCTTC	4 cut(s)	63, 112, 640, 833
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	3 cut(s)	129, 145, 238
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	590
EcoT14I	CCWWGG	3 cut(s)	129, 145, 238
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	3 cut(s)	129, 145, 238
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	3 cut(s)	133, 208, 314
FaiI	YATR	8 cut(s)	131, 167, 206, 312, 646, 734, 957, 964
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	3 cut(s)	129, 204, 310
FauI	CCCGC	2 cut(s)	144, 698
FbaI	TGATCA	1 cut(s)	855
Fnu4HI	GCNGC	4 cut(s)	248, 377, 484, 921
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	4 cut(s)	248, 377, 484, 921
FspBI	CTAG	2 cut(s)	497, 533
GlaI	GCGC	2 cut(s)	103, 236
GluI	GCNGC	4 cut(s)	248, 377, 484, 921
GsaI	CCCAGC	1 cut(s)	773
HaeIII	GGCC	2 cut(s)	188, 336
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	2 cut(s)	104, 237
Hin1II	CATG	3 cut(s)	133, 208, 314
Hin6I	GCGC	2 cut(s)	102, 235
HinP1I	GCGC	2 cut(s)	102, 235
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	2 cut(s)	748, 774
Hpy188I	TCNGA	3 cut(s)	329, 653, 687
Hpy188III	TCNNGA	3 cut(s)	272, 478, 859
Hpy99I	CGWCG	3 cut(s)	70, 226, 278
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	4 cut(s)	21, 180, 224, 276
HpyCH4V	TGCA	7 cut(s)	96, 280, 314, 379, 452, 758, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 150, 253, 385, 920
HpyF3I	CTNAG	2 cut(s)	115, 615
HpySE526I	ACGT	4 cut(s)	21, 180, 224, 276
Hsp92II	CATG	3 cut(s)	133, 208, 314
HspAI	GCGC	2 cut(s)	102, 235
Ksp22I	TGATCA	1 cut(s)	855
Kzo9I	GATC	6 cut(s)	211, 329, 687, 784, 855, 880
LmnI	GCTCC	2 cut(s)	150, 401
Lsp1109I	GCAGC	4 cut(s)	259, 363, 495, 907
LweI	GCATC	5 cut(s)	105, 128, 323, 439, 907
MaeI	CTAG	2 cut(s)	497, 533
MaeII	ACGT	4 cut(s)	21, 180, 224, 276
MalI	GATC	6 cut(s)	213, 331, 689, 786, 857, 882
MboI	GATC	6 cut(s)	211, 329, 687, 784, 855, 880
MboII	GAAGA	7 cut(s)	4, 50, 63, 99, 627, 850, 877
MfeI	CAATTG	1 cut(s)	578
MhlI	GDGCHC	2 cut(s)	406, 474
MluCI	AATT	3 cut(s)	578, 675, 892
MlyI	GAGTC	1 cut(s)	757
MmeI	TCCRAC	3 cut(s)	464, 692, 762
Mph1103I	ATGCAT	1 cut(s)	316
MspR9I	CCNGG	1 cut(s)	592
MunI	CAATTG	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	592
MvnI	CGCG	2 cut(s)	102, 235
MwoI	GCNNNNNNNGC	5 cut(s)	110, 150, 253, 385, 920
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	6 cut(s)	211, 329, 687, 784, 855, 880
NlaIII	CATG	3 cut(s)	133, 208, 314
NlaIV	GGNNCC	4 cut(s)	135, 189, 304, 940
NsiI	ATGCAT	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	774
PflMI	CCANNNNNTGG	1 cut(s)	398
PkrI	GCNGC	4 cut(s)	249, 378, 485, 922
Ple19I	CGATCG	1 cut(s)	332
PleI	GAGTC	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	756
Ppu21I	YACGTR	1 cut(s)	181
PsiI	TTATAA	1 cut(s)	957
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	590
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	1 cut(s)	590
PspN4I	GGNNCC	4 cut(s)	135, 189, 304, 940
PspPI	GGNCC	3 cut(s)	133, 187, 334
PstI	CTGCAG	1 cut(s)	925
PvuI	CGATCG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	262, 284
RsaNI	GTAC	2 cut(s)	261, 283
SacI	GAGCTC	1 cut(s)	474
SatI	GCNGC	4 cut(s)	248, 377, 484, 921
Sau3AI	GATC	6 cut(s)	211, 329, 687, 784, 855, 880
Sau96I	GGNCC	3 cut(s)	133, 187, 334
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	1 cut(s)	592
SduI	GDGCHC	2 cut(s)	406, 474
SfaNI	GCATC	5 cut(s)	105, 128, 323, 439, 907
SfcI	CTRYAG	1 cut(s)	921
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	2 cut(s)	467, 602
SmoI	CTYRAG	2 cut(s)	467, 602
Sse9I	AATT	3 cut(s)	578, 675, 892
SsiI	CCGC	6 cut(s)	36, 100, 111, 137, 672, 705
SspI	AATATT	1 cut(s)	833
SspMI	CTAG	2 cut(s)	497, 533
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	590
StyI	CCWWGG	3 cut(s)	129, 145, 238
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	4 cut(s)	24, 183, 227, 279
TaqI	TCGA	3 cut(s)	210, 221, 690
TasI	AATT	3 cut(s)	578, 675, 892
TatI	WGTACW	2 cut(s)	260, 282
TfiI	GAWTC	1 cut(s)	774
TscAI	CASTG	2 cut(s)	386, 411
TseI	GCWGC	4 cut(s)	247, 376, 483, 920
TspDTI	ATGAA	2 cut(s)	154, 627
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	386, 411
Van91I	CCANNNNNTGG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XspI	CTAG	2 cut(s)	497, 533
ZrmI	AGTACT	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.