Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Forward (+)

27033373 .. 27035040

Gene Structure 1668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56353

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCTGTCCTCTTCCGCCACATTTTCCAGTCTCCACCACCATCCTCCTCCTCCTCCGCTTCTCTACCTTCAACCAAACCAAGGCCATTCTTCTGCTCCGCATCAGCGTCATCCTCCATGGAGCCGCACCCAACAAAGTTCATGGAGTTCCCTTACGTCTCAACCCCTCACAAGAACCTCATGGTTCATCTTGTATCCACCGTCGAGACGCGCCTCGCCTCCCACCTCCTTCCTTCAACTCTCCCGCCAGACGTACAATACTACCAGAACGACACCGCCACTAACCATGCGTCTCTTCACATCAGATCCGGCCTCCCCTCCTCCCCTATTGATTTCATACTAGGAAGTTGGCTGCACTGTCAGCTACCAACAGGTGGAGCATTGAACATTACAAGTTTTTCATCCTATCTCAACCCATCAACAGATGCACCTAATTTCCTACTCGAGTTGATCCAAAGCAGTCCGACTTCACTAGTCCTCATCCTGGACTTGCCTCCTCGAAAAGACCTTGTTCTTCACCCAGACTACCTCAAAACATTTTATGAGGATACAAAGCTGGACACCCCAAGGCAAAAGCTCCAGAAACTAGCTGAGGTGAAACCTTACTTCTCCTCATCGCTTTACATCCGCAGCGTTGTGTCTCCTACCGCAATTTTGGTTCGTGTAGAAGCAGTAGAGGGAGGGCTAAGCTTAGAGGAGATCATAGAGAACCATATCGGTCCGGTTGCAAGGGAAGTGTTGGGCATCTGGTTGGAACAATGCGCTCTTGGGAAGAGAGAAGTAGGGGAGAATGAGAAAGCTGAACTGAAGAAGAGGGATGATTTGGTTAAGAGAAAGACTATTGAGATTGATCTGGGCTCGAATTTTCCTAGATTGTTCGGACCTGATGCTGCAGATCGAGTATTGGGAGCCATTCGTGAAGCTTATAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

311

Amino Acids

34.5

Weight (kDa)

6.56

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	56 - 307	3.9e-120	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccII	CGCG	1 cut(s)	211
AciI	CCGC	8 cut(s)	16, 57, 99, 125, 245, 276, 628, 648
AclWI	GGATC	2 cut(s)	300, 445
AcsI	RAATTY	1 cut(s)	862
AcuI	CTGAAG	1 cut(s)	827
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	3 cut(s)	81, 374, 484
AgsI	TTSAA	3 cut(s)	72, 237, 385
AhlI	ACTAGT	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	7 cut(s)	364, 556, 577, 590, 690, 800, 923
AluI	AGCT	7 cut(s)	364, 556, 577, 590, 690, 800, 923
Alw26I	GTCTC	5 cut(s)	36, 163, 200, 297, 645
AlwI	GGATC	2 cut(s)	300, 445
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	83, 310
ApeKI	GCWGC	3 cut(s)	352, 630, 890
ApoI	RAATTY	1 cut(s)	862
AspLEI	GCGC	2 cut(s)	213, 764
AspS9I	GGNCC	2 cut(s)	719, 881
AsuHPI	GGTGA	2 cut(s)	509, 607
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	2 cut(s)	719, 881
BanII	GRGCYC	1 cut(s)	860
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	3 cut(s)	339, 642, 877
BccI	CCATC	2 cut(s)	49, 424
BciT130I	CCWGG	1 cut(s)	485
BciVI	GTATCC	2 cut(s)	205, 541
BcoDI	GTCTC	5 cut(s)	36, 163, 200, 297, 645
BcuI	ACTAGT	1 cut(s)	472
BfaI	CTAG	4 cut(s)	341, 473, 587, 870
BfmI	CTRYAG	1 cut(s)	891
BfuI	GTATCC	2 cut(s)	205, 541
BisI	GCNGC	4 cut(s)	125, 353, 631, 891
BlpI	GCTNAGC	1 cut(s)	686
BlsI	GCNGC	4 cut(s)	126, 354, 632, 892
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	2 cut(s)	719, 881
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	719, 881
BmiI	GGNNCC	2 cut(s)	123, 910
BmrFI	CCNGG	1 cut(s)	485
BmsI	GCATC	4 cut(s)	110, 415, 753, 877
BpmI	CTGGAG	1 cut(s)	563
Bpu10I	CCTNAGC	1 cut(s)	591
Bpu1102I	GCTNAGC	1 cut(s)	686
BsaJI	CCNNGG	3 cut(s)	80, 117, 566
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 374, 484
Bse1I	ACTGG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	3 cut(s)	80, 117, 566
BseGI	GGATG	6 cut(s)	41, 110, 401, 480, 624, 823
BseLI	CCNNNNNNNGG	3 cut(s)	81, 374, 484
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	7 cut(s)	37, 40, 43, 310, 486, 601, 710
BseXI	GCAGC	3 cut(s)	339, 642, 877
BsgI	GTGCAG	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	85, 312
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	309, 722
BslI	CCNNNNNNNGG	3 cut(s)	81, 374, 484
BsmAI	GTCTC	5 cut(s)	36, 163, 200, 297, 645
BsmBI	CGTCTC	3 cut(s)	163, 200, 297
BsnI	GGCC	2 cut(s)	85, 312
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	860
Bsp143I	GATC	5 cut(s)	305, 450, 699, 850, 895
Bsp1720I	GCTNAGC	1 cut(s)	686
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	8 cut(s)	16, 57, 99, 125, 245, 276, 628, 648
BspANI	GGCC	2 cut(s)	85, 312
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	123, 910
BspMAI	CTGCAG	1 cut(s)	895
BspPI	GGATC	2 cut(s)	300, 445
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	80, 117, 566
BssMI	GATC	5 cut(s)	305, 450, 699, 850, 895
BssT1I	CCWWGG	3 cut(s)	80, 117, 566
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	2 cut(s)	202, 359
Bst6I	CTCTTC	4 cut(s)	17, 300, 767, 806
BstDEI	CTNAG	3 cut(s)	591, 686, 691
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	6 cut(s)	41, 110, 401, 480, 624, 823
BstFNI	CGCG	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	213, 764
BstKTI	GATC	5 cut(s)	308, 453, 702, 853, 898
BstMAI	GTCTC	5 cut(s)	36, 163, 200, 297, 645
BstMBI	GATC	5 cut(s)	305, 450, 699, 850, 895
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	891
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	3 cut(s)	339, 642, 877
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuI	GTATCC	2 cut(s)	205, 541
BsuRI	GGCC	2 cut(s)	85, 312
BtgI	CCRYGG	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	600
BtsCI	GGATG	6 cut(s)	41, 110, 401, 480, 624, 823
BtsIMutI	CAGTG	1 cut(s)	355
CfoI	GCGC	2 cut(s)	213, 764
Cfr13I	GGNCC	2 cut(s)	719, 881
CpoI	CGGWCCG	1 cut(s)	719
CseI	GACGC	3 cut(s)	96, 217, 279
Csp6I	GTAC	1 cut(s)	254
CspI	CGGWCCG	1 cut(s)	719
CviAII	CATG	4 cut(s)	118, 142, 181, 287
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	3 cut(s)	591, 686, 691
DpnI	GATC	5 cut(s)	307, 452, 701, 852, 897
DpnII	GATC	5 cut(s)	305, 450, 699, 850, 895
Eam1104I	CTCTTC	4 cut(s)	17, 300, 767, 806
EarI	CTCTTC	4 cut(s)	17, 300, 767, 806
EciI	GGCGGA	1 cut(s)	5
Eco130I	CCWWGG	3 cut(s)	80, 117, 566
Eco24I	GRGCYC	1 cut(s)	860
Eco47I	GGWCC	2 cut(s)	719, 881
Eco57I	CTGAAG	1 cut(s)	827
Eco88I	CYCGRG	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	3 cut(s)	80, 117, 566
EcoT38I	GRGCYC	1 cut(s)	860
ErhI	CCWWGG	3 cut(s)	80, 117, 566
Esp3I	CGTCTC	3 cut(s)	163, 200, 297
FaeI	CATG	4 cut(s)	121, 145, 184, 290
FatI	CATG	4 cut(s)	117, 141, 180, 286
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	125, 353, 631, 891
FokI	GGATG	6 cut(s)	28, 97, 388, 467, 611, 830
FriOI	GRGCYC	1 cut(s)	860
Fsp4HI	GCNGC	4 cut(s)	125, 353, 631, 891
FspBI	CTAG	4 cut(s)	341, 473, 587, 870
GlaI	GCGC	2 cut(s)	212, 763
GluI	GCNGC	4 cut(s)	125, 353, 631, 891
GsuI	CTGGAG	1 cut(s)	563
HaeIII	GGCC	2 cut(s)	85, 312
HapII	CCGG	2 cut(s)	309, 722
HgaI	GACGC	3 cut(s)	96, 217, 279
HhaI	GCGC	2 cut(s)	213, 764
Hin1II	CATG	4 cut(s)	121, 145, 184, 290
Hin6I	GCGC	2 cut(s)	211, 762
HinP1I	GCGC	2 cut(s)	211, 762
HindIII	AAGCTT	2 cut(s)	688, 921
HpaII	CCGG	2 cut(s)	309, 722
HphI	GGTGA	2 cut(s)	509, 607
Hpy188I	TCNGA	3 cut(s)	305, 465, 881
Hpy188III	TCNNGA	3 cut(s)	205, 580, 917
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	78, 239, 243
HpyCH4III	ACNGT	2 cut(s)	202, 359
HpyCH4IV	ACGT	2 cut(s)	156, 252
HpyCH4V	TGCA	4 cut(s)	355, 428, 728, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	3 cut(s)	591, 686, 691
HpySE526I	ACGT	2 cut(s)	156, 252
Hsp92II	CATG	4 cut(s)	121, 145, 184, 290
HspAI	GCGC	2 cut(s)	211, 762
Kzo9I	GATC	5 cut(s)	305, 450, 699, 850, 895
LmnI	GCTCC	5 cut(s)	101, 121, 377, 582, 908
Lsp1109I	GCAGC	3 cut(s)	339, 642, 877
LweI	GCATC	4 cut(s)	110, 415, 753, 877
MaeI	CTAG	4 cut(s)	341, 473, 587, 870
MaeII	ACGT	2 cut(s)	156, 252
MalI	GATC	5 cut(s)	307, 452, 701, 852, 897
MboI	GATC	5 cut(s)	305, 450, 699, 850, 895
MboII	GAAGA	7 cut(s)	4, 82, 287, 506, 784, 820, 823
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	860
MluCI	AATT	3 cut(s)	433, 651, 862
MmeI	TCCRAC	2 cut(s)	488, 732
MseI	TTAA	1 cut(s)	828
MspI	CCGG	2 cut(s)	309, 722
MspR9I	CCNGG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	5 cut(s)	305, 450, 699, 850, 895
NlaIII	CATG	4 cut(s)	121, 145, 184, 290
NlaIV	GGNNCC	2 cut(s)	123, 910
PaeR7I	CTCGAG	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	374
PfoI	TCCNGGA	1 cut(s)	483
PkrI	GCNGC	4 cut(s)	126, 354, 632, 892
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	123, 910
PspPI	GGNCC	2 cut(s)	719, 881
PspXI	VCTCGAGB	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	895
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
Rsr2I	CGGWCCG	1 cut(s)	719
RsrII	CGGWCCG	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	828
SatI	GCNGC	4 cut(s)	125, 353, 631, 891
Sau3AI	GATC	5 cut(s)	305, 450, 699, 850, 895
Sau96I	GGNCC	2 cut(s)	719, 881
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	860
SfaNI	GCATC	4 cut(s)	110, 415, 753, 877
SfcI	CTRYAG	1 cut(s)	891
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	2 cut(s)	719, 881
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	472
Sse9I	AATT	3 cut(s)	433, 651, 862
SsiI	CCGC	8 cut(s)	16, 57, 99, 125, 245, 276, 628, 648
SspMI	CTAG	4 cut(s)	341, 473, 587, 870
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	3 cut(s)	80, 117, 566
TaaI	ACNGT	2 cut(s)	202, 359
TaiI	ACGT	2 cut(s)	159, 255
TaqI	TCGA	5 cut(s)	204, 444, 499, 860, 898
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	3 cut(s)	433, 651, 862
TauI	GCSGC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	828
Tru9I	TTAA	1 cut(s)	828
TscAI	CASTG	1 cut(s)	362
TseI	GCWGC	3 cut(s)	352, 630, 890
TspDTI	ATGAA	4 cut(s)	130, 176, 325, 390
TspRI	CASTG	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	374
VpaK11BI	GGWCC	2 cut(s)	719, 881
XapI	RAATTY	1 cut(s)	862
XhoI	CTCGAG	1 cut(s)	443
XspI	CTAG	4 cut(s)	341, 473, 587, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.