Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006031.1

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Reverse (-)

11177 .. 12633

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006031.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggctgtcctcttccgccacattttccagtctccaccaccatcctcctccgcttctctaccttcatccaaaccaaggccattcttctgctccgcatcagcgtcatcctccatggagccgcacccaacaaagttcatggagttcccctacgtctcaacccctcacaagaacctcatggttcatcttgtatccaccgtcgagacgcgcctcgcctcccacctccttccttcaactctcccaccagacgtacaatactaccagaacgacaccgccactaaccatgcgtctcttcacatcagatccggccttccctcctcccctattgatttcatactaggaagttggctgcactgtcagctaccaacaggtggagcattgaacattacaagtttttcatcctatctcaacccatcaactgatgcacctaatttcctactcgagttgatccaaagcagtccgacttcactagtcctcatcctggacttgccttctcgaaaagaccttgttctccacccagactacctcaaaacattttatgaggatacaaagctggacagcccaaggcaaaagctcgagaaactagctgaggtgaaaccttacttctcctcatcgctttacatccgcagcgttgtgtcgcctaccgcaattttggttcgtgtagaagcagtagagggagggctaagcttagaggagatcatagagaaccatatcggtccggttgcaagggaagtgttgggcatctggttggaacaatgcgctcttgggaagagagaagtaggggagaatgagaaagctgaactgaagaagagggatgatttggttaagagaaagactattgagattgatctgggctcgaattttcctagattgtttggacctgatgctgcagatcgagtattgggagccattcgtgaagcttatagggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

309

Amino Acids

34.29

Weight (kDa)

6.37

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccII	CGCG	1 cut(s)	205
AciI	CCGC	7 cut(s)	16, 51, 93, 119, 270, 622, 642
AclWI	GGATC	2 cut(s)	294, 439
AcsI	RAATTY	1 cut(s)	856
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	3 cut(s)	75, 368, 478
AgsI	TTSAA	2 cut(s)	231, 379
AhlI	ACTAGT	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	7 cut(s)	358, 550, 571, 584, 684, 794, 917
AluI	AGCT	7 cut(s)	358, 550, 571, 584, 684, 794, 917
Alw26I	GTCTC	4 cut(s)	36, 157, 194, 291
AlwI	GGATC	2 cut(s)	294, 439
Ama87I	CYCGRG	2 cut(s)	437, 572
AoxI	GGCC	2 cut(s)	77, 304
ApeKI	GCWGC	3 cut(s)	346, 624, 884
ApoI	RAATTY	1 cut(s)	856
AspLEI	GCGC	2 cut(s)	207, 758
AspS9I	GGNCC	2 cut(s)	713, 875
AsuHPI	GGTGA	1 cut(s)	601
AvaI	CYCGRG	2 cut(s)	437, 572
AvaII	GGWCC	2 cut(s)	713, 875
BanII	GRGCYC	1 cut(s)	854
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	3 cut(s)	333, 636, 871
BccI	CCATC	2 cut(s)	49, 418
BciT130I	CCWGG	1 cut(s)	479
BciVI	GTATCC	2 cut(s)	199, 535
BcoDI	GTCTC	4 cut(s)	36, 157, 194, 291
BcuI	ACTAGT	1 cut(s)	466
BfaI	CTAG	4 cut(s)	335, 467, 581, 864
BfmI	CTRYAG	1 cut(s)	885
BfuI	GTATCC	2 cut(s)	199, 535
BisI	GCNGC	4 cut(s)	119, 347, 625, 885
BlpI	GCTNAGC	1 cut(s)	680
BlsI	GCNGC	4 cut(s)	120, 348, 626, 886
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	2 cut(s)	713, 875
BmeT110I	CYCGRG	2 cut(s)	437, 572
BmgT120I	GGNCC	2 cut(s)	713, 875
BmiI	GGNNCC	2 cut(s)	117, 904
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	4 cut(s)	104, 409, 747, 871
Bpu10I	CCTNAGC	1 cut(s)	585
Bpu1102I	GCTNAGC	1 cut(s)	680
BsaJI	CCNNGG	3 cut(s)	74, 111, 560
BsaWI	WCCGGW	1 cut(s)	715
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 368, 478
Bse1I	ACTGG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	3 cut(s)	74, 111, 560
BseGI	GGATG	7 cut(s)	41, 65, 104, 395, 474, 618, 817
BseLI	CCNNNNNNNGG	3 cut(s)	75, 368, 478
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	4 cut(s)	37, 304, 595, 704
BseXI	GCAGC	3 cut(s)	333, 636, 871
BsgI	GTGCAG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	79, 306
BsiHKCI	CYCGRG	2 cut(s)	437, 572
BsiSI	CCGG	2 cut(s)	303, 716
BslI	CCNNNNNNNGG	3 cut(s)	75, 368, 478
BsmAI	GTCTC	4 cut(s)	36, 157, 194, 291
BsmBI	CGTCTC	3 cut(s)	157, 194, 291
BsnI	GGCC	2 cut(s)	79, 306
BsoBI	CYCGRG	2 cut(s)	437, 572
Bsp1286I	GDGCHC	1 cut(s)	854
Bsp143I	GATC	5 cut(s)	299, 444, 693, 844, 889
Bsp1720I	GCTNAGC	1 cut(s)	680
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	7 cut(s)	16, 51, 93, 119, 270, 622, 642
BspANI	GGCC	2 cut(s)	79, 306
BspCNI	CTCAG	1 cut(s)	577
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	117, 904
BspMAI	CTGCAG	1 cut(s)	889
BspPI	GGATC	2 cut(s)	294, 439
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	74, 111, 560
BssMI	GATC	5 cut(s)	299, 444, 693, 844, 889
BssT1I	CCWWGG	3 cut(s)	74, 111, 560
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	2 cut(s)	196, 353
Bst6I	CTCTTC	4 cut(s)	17, 294, 761, 800
BstDEI	CTNAG	3 cut(s)	585, 680, 685
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	7 cut(s)	41, 65, 104, 395, 474, 618, 817
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	2 cut(s)	207, 758
BstKTI	GATC	5 cut(s)	302, 447, 696, 847, 892
BstMAI	GTCTC	4 cut(s)	36, 157, 194, 291
BstMBI	GATC	5 cut(s)	299, 444, 693, 844, 889
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstSFI	CTRYAG	1 cut(s)	885
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	333, 636, 871
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BsuI	GTATCC	2 cut(s)	199, 535
BsuRI	GGCC	2 cut(s)	79, 306
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	594
BtsCI	GGATG	7 cut(s)	41, 65, 104, 395, 474, 618, 817
BtsIMutI	CAGTG	1 cut(s)	349
CfoI	GCGC	2 cut(s)	207, 758
Cfr13I	GGNCC	2 cut(s)	713, 875
CpoI	CGGWCCG	1 cut(s)	713
CseI	GACGC	3 cut(s)	90, 211, 273
Csp6I	GTAC	1 cut(s)	248
CspI	CGGWCCG	1 cut(s)	713
CviAII	CATG	4 cut(s)	112, 136, 175, 281
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	3 cut(s)	585, 680, 685
DpnI	GATC	5 cut(s)	301, 446, 695, 846, 891
DpnII	GATC	5 cut(s)	299, 444, 693, 844, 889
Eam1104I	CTCTTC	4 cut(s)	17, 294, 761, 800
EarI	CTCTTC	4 cut(s)	17, 294, 761, 800
EciI	GGCGGA	1 cut(s)	5
Eco130I	CCWWGG	3 cut(s)	74, 111, 560
Eco24I	GRGCYC	1 cut(s)	854
Eco47I	GGWCC	2 cut(s)	713, 875
Eco57I	CTGAAG	1 cut(s)	821
Eco88I	CYCGRG	2 cut(s)	437, 572
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	3 cut(s)	74, 111, 560
EcoT38I	GRGCYC	1 cut(s)	854
ErhI	CCWWGG	3 cut(s)	74, 111, 560
Esp3I	CGTCTC	3 cut(s)	157, 194, 291
FaeI	CATG	4 cut(s)	115, 139, 178, 284
FatI	CATG	4 cut(s)	111, 135, 174, 280
Fnu4HI	GCNGC	4 cut(s)	119, 347, 625, 885
FokI	GGATG	7 cut(s)	28, 52, 91, 382, 461, 605, 824
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	4 cut(s)	119, 347, 625, 885
FspBI	CTAG	4 cut(s)	335, 467, 581, 864
GlaI	GCGC	2 cut(s)	206, 757
GluI	GCNGC	4 cut(s)	119, 347, 625, 885
HaeIII	GGCC	2 cut(s)	79, 306
HapII	CCGG	2 cut(s)	303, 716
HgaI	GACGC	3 cut(s)	90, 211, 273
HhaI	GCGC	2 cut(s)	207, 758
Hin1II	CATG	4 cut(s)	115, 139, 178, 284
Hin6I	GCGC	2 cut(s)	205, 756
HinP1I	GCGC	2 cut(s)	205, 756
HindIII	AAGCTT	2 cut(s)	682, 915
HpaII	CCGG	2 cut(s)	303, 716
HphI	GGTGA	1 cut(s)	601
Hpy188I	TCNGA	2 cut(s)	299, 459
Hpy188III	TCNNGA	4 cut(s)	199, 492, 574, 911
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	5 cut(s)	72, 233, 237, 317, 498
HpyCH4III	ACNGT	2 cut(s)	196, 353
HpyCH4IV	ACGT	2 cut(s)	150, 246
HpyCH4V	TGCA	4 cut(s)	349, 422, 722, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	3 cut(s)	585, 680, 685
HpySE526I	ACGT	2 cut(s)	150, 246
Hsp92II	CATG	4 cut(s)	115, 139, 178, 284
HspAI	GCGC	2 cut(s)	205, 756
Kzo9I	GATC	5 cut(s)	299, 444, 693, 844, 889
LmnI	GCTCC	4 cut(s)	95, 115, 371, 902
Lsp1109I	GCAGC	3 cut(s)	333, 636, 871
LweI	GCATC	4 cut(s)	104, 409, 747, 871
MaeI	CTAG	4 cut(s)	335, 467, 581, 864
MaeII	ACGT	2 cut(s)	150, 246
MalI	GATC	5 cut(s)	301, 446, 695, 846, 891
MboI	GATC	5 cut(s)	299, 444, 693, 844, 889
MboII	GAAGA	6 cut(s)	4, 76, 281, 778, 814, 817
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	854
MluCI	AATT	3 cut(s)	427, 645, 856
MmeI	TCCRAC	2 cut(s)	482, 726
MseI	TTAA	1 cut(s)	822
MspI	CCGG	2 cut(s)	303, 716
MspR9I	CCNGG	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	5 cut(s)	299, 444, 693, 844, 889
NlaIII	CATG	4 cut(s)	115, 139, 178, 284
NlaIV	GGNNCC	2 cut(s)	117, 904
PaeR7I	CTCGAG	2 cut(s)	437, 572
PflMI	CCANNNNNTGG	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	477
PkrI	GCNGC	4 cut(s)	120, 348, 626, 886
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	117, 904
PspPI	GGNCC	2 cut(s)	713, 875
PspXI	VCTCGAGB	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	889
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
Rsr2I	CGGWCCG	1 cut(s)	713
RsrII	CGGWCCG	1 cut(s)	713
SaqAI	TTAA	1 cut(s)	822
SatI	GCNGC	4 cut(s)	119, 347, 625, 885
Sau3AI	GATC	5 cut(s)	299, 444, 693, 844, 889
Sau96I	GGNCC	2 cut(s)	713, 875
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	854
SfaNI	GCATC	4 cut(s)	104, 409, 747, 871
SfcI	CTRYAG	1 cut(s)	885
Sfr274I	CTCGAG	2 cut(s)	437, 572
SinI	GGWCC	2 cut(s)	713, 875
SlaI	CTCGAG	2 cut(s)	437, 572
SmlI	CTYRAG	2 cut(s)	437, 572
SmoI	CTYRAG	2 cut(s)	437, 572
SpeI	ACTAGT	1 cut(s)	466
Sse9I	AATT	3 cut(s)	427, 645, 856
SsiI	CCGC	7 cut(s)	16, 51, 93, 119, 270, 622, 642
SspMI	CTAG	4 cut(s)	335, 467, 581, 864
StyD4I	CCNGG	1 cut(s)	477
StyI	CCWWGG	3 cut(s)	74, 111, 560
TaaI	ACNGT	2 cut(s)	196, 353
TaiI	ACGT	2 cut(s)	153, 249
TaqI	TCGA	6 cut(s)	198, 438, 493, 573, 854, 892
TaqII	GACCGA	1 cut(s)	701
TasI	AATT	3 cut(s)	427, 645, 856
TauI	GCSGC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	822
Tru9I	TTAA	1 cut(s)	822
TscAI	CASTG	1 cut(s)	356
TseI	GCWGC	3 cut(s)	346, 624, 884
TspDTI	ATGAA	5 cut(s)	54, 124, 170, 319, 384
TspRI	CASTG	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	713, 875
XapI	RAATTY	1 cut(s)	856
XhoI	CTCGAG	2 cut(s)	437, 572
XspI	CTAG	4 cut(s)	335, 467, 581, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.