Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Forward (+)

26063406 .. 26064873

Gene Structure 1468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTGTCCTCTTCCGCAACATTTTCCAGTCTCCACCACCATCCTCCTCCTCCTCCTCCTCCGCTTCTCTACCTTCAACCAAACCAAGGCCATTCTTCTGCTCCGCATCAGCGTCATCCTCCATGGAGCCGCACCCAACAAAGTTCATGGAGTTCCCCTACGTCTCAACCCCTCACAAGAACCTCATGGTTCATCTTGTATCCACCGTCGAGACGCGCCTCGCCTCCCACCTCCTTCCTTCAACGCTCCCACCAGACGTACAATACTACCAGAACGACACCGCCACTAACCATGCGTCTCTTCACATCAGATCCGGCCTCCCCTCCTCCCCTATTGATTTCATACTAGGAAGTTGGCTGCACTGTCAGCTACCAACAGGTGGAGCATTGAACATTACAAGTTTTTCATCCTATCTCAACCCATCAACAGATGCACCTAATTTCCTACTCGAGTTGATCCAAAGCAGTCCGACTTCACTAGTCCTCATCCTGGACTTGCCTCCTCGAAAAGACCTTGTTCTCCACCCAGACTACCTCAAAACATTTTATGAGGATACAAAGCTGGACACCCCAAGGCAAAAGCTCGAGAAACTAGCTGAGGTGAAACCTTACTTCTCCTCATCGCTTTACATCCGCAGCGTTGTGTCGCCTACCGCAATTTTGGTTCGTGTAGAAGCAGTAGAGGGAGGGCTAAGCTTAGAGGAGATCATAGAGAACCATATCGGTCCGGTTGCAAAGGAAGTGTTGGGCATCTGGTTGGAACAATGCGCTCTTGGGAAGAGAGAAGTAGGGGAGAATGAGAAAGCTGAACTGAAGAAGAGGGATGATTTGGTTAAGAGAAAGACTATTGAGATTGATCTGGGCTCGAATTTTCCTAGATTGTTTGGACCTGATGCTGCAGATCGAGTATTGGGAGCCATTCGTGAAGCTTATAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

313

Amino Acids

34.62

Weight (kDa)

6.32

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	58 - 309	1.2e-120	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccII	CGCG	1 cut(s)	217
AciI	CCGC	7 cut(s)	16, 63, 105, 131, 282, 634, 654
AclWI	GGATC	2 cut(s)	306, 451
AcsI	RAATTY	1 cut(s)	868
AcuI	CTGAAG	1 cut(s)	833
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	3 cut(s)	87, 380, 490
AgsI	TTSAA	3 cut(s)	78, 243, 391
AhlI	ACTAGT	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	7 cut(s)	370, 562, 583, 596, 696, 806, 929
AluI	AGCT	7 cut(s)	370, 562, 583, 596, 696, 806, 929
Alw26I	GTCTC	4 cut(s)	36, 169, 206, 303
AlwI	GGATC	2 cut(s)	306, 451
Ama87I	CYCGRG	2 cut(s)	449, 584
AoxI	GGCC	2 cut(s)	89, 316
ApeKI	GCWGC	3 cut(s)	358, 636, 896
ApoI	RAATTY	1 cut(s)	868
AspLEI	GCGC	2 cut(s)	219, 770
AspS9I	GGNCC	2 cut(s)	725, 887
AsuHPI	GGTGA	1 cut(s)	613
AvaI	CYCGRG	2 cut(s)	449, 584
AvaII	GGWCC	2 cut(s)	725, 887
BanII	GRGCYC	1 cut(s)	866
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	3 cut(s)	345, 648, 883
BccI	CCATC	2 cut(s)	49, 430
BciT130I	CCWGG	1 cut(s)	491
BciVI	GTATCC	2 cut(s)	211, 547
BcoDI	GTCTC	4 cut(s)	36, 169, 206, 303
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	4 cut(s)	347, 479, 593, 876
BfmI	CTRYAG	1 cut(s)	897
BfuI	GTATCC	2 cut(s)	211, 547
BisI	GCNGC	4 cut(s)	131, 359, 637, 897
BlpI	GCTNAGC	1 cut(s)	692
BlsI	GCNGC	4 cut(s)	132, 360, 638, 898
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	2 cut(s)	725, 887
BmeT110I	CYCGRG	2 cut(s)	449, 584
BmgT120I	GGNCC	2 cut(s)	725, 887
BmiI	GGNNCC	2 cut(s)	129, 916
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	4 cut(s)	116, 421, 759, 883
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu1102I	GCTNAGC	1 cut(s)	692
BsaJI	CCNNGG	3 cut(s)	86, 123, 572
BsaWI	WCCGGW	1 cut(s)	727
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 380, 490
Bse1I	ACTGG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	3 cut(s)	86, 123, 572
BseGI	GGATG	6 cut(s)	41, 116, 407, 486, 630, 829
BseLI	CCNNNNNNNGG	3 cut(s)	87, 380, 490
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	9 cut(s)	37, 40, 43, 46, 49, 316, 492, 607, 716
BseXI	GCAGC	3 cut(s)	345, 648, 883
BsgI	GTGCAG	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	217
BshFI	GGCC	2 cut(s)	91, 318
BsiHKCI	CYCGRG	2 cut(s)	449, 584
BsiSI	CCGG	2 cut(s)	315, 728
BslI	CCNNNNNNNGG	3 cut(s)	87, 380, 490
BsmAI	GTCTC	4 cut(s)	36, 169, 206, 303
BsmBI	CGTCTC	3 cut(s)	169, 206, 303
BsnI	GGCC	2 cut(s)	91, 318
BsoBI	CYCGRG	2 cut(s)	449, 584
Bsp1286I	GDGCHC	1 cut(s)	866
Bsp143I	GATC	5 cut(s)	311, 456, 705, 856, 901
Bsp1720I	GCTNAGC	1 cut(s)	692
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	7 cut(s)	16, 63, 105, 131, 282, 634, 654
BspANI	GGCC	2 cut(s)	91, 318
BspCNI	CTCAG	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	129, 916
BspMAI	CTGCAG	1 cut(s)	901
BspPI	GGATC	2 cut(s)	306, 451
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	86, 123, 572
BssMI	GATC	5 cut(s)	311, 456, 705, 856, 901
BssT1I	CCWWGG	3 cut(s)	86, 123, 572
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	2 cut(s)	208, 365
Bst6I	CTCTTC	4 cut(s)	17, 306, 773, 812
BstDEI	CTNAG	3 cut(s)	597, 692, 697
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	6 cut(s)	41, 116, 407, 486, 630, 829
BstFNI	CGCG	1 cut(s)	217
BstHHI	GCGC	2 cut(s)	219, 770
BstKTI	GATC	5 cut(s)	314, 459, 708, 859, 904
BstMAI	GTCTC	4 cut(s)	36, 169, 206, 303
BstMBI	GATC	5 cut(s)	311, 456, 705, 856, 901
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	897
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	345, 648, 883
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuI	GTATCC	2 cut(s)	211, 547
BsuRI	GGCC	2 cut(s)	91, 318
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	606
BtsCI	GGATG	6 cut(s)	41, 116, 407, 486, 630, 829
BtsIMutI	CAGTG	1 cut(s)	361
CfoI	GCGC	2 cut(s)	219, 770
Cfr13I	GGNCC	2 cut(s)	725, 887
CpoI	CGGWCCG	1 cut(s)	725
CseI	GACGC	3 cut(s)	102, 223, 285
Csp6I	GTAC	1 cut(s)	260
CspI	CGGWCCG	1 cut(s)	725
CviAII	CATG	4 cut(s)	124, 148, 187, 293
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	3 cut(s)	597, 692, 697
DpnI	GATC	5 cut(s)	313, 458, 707, 858, 903
DpnII	GATC	5 cut(s)	311, 456, 705, 856, 901
Eam1104I	CTCTTC	4 cut(s)	17, 306, 773, 812
EarI	CTCTTC	4 cut(s)	17, 306, 773, 812
Eco130I	CCWWGG	3 cut(s)	86, 123, 572
Eco24I	GRGCYC	1 cut(s)	866
Eco47I	GGWCC	2 cut(s)	725, 887
Eco57I	CTGAAG	1 cut(s)	833
Eco88I	CYCGRG	2 cut(s)	449, 584
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	3 cut(s)	86, 123, 572
EcoT38I	GRGCYC	1 cut(s)	866
ErhI	CCWWGG	3 cut(s)	86, 123, 572
Esp3I	CGTCTC	3 cut(s)	169, 206, 303
FaeI	CATG	4 cut(s)	127, 151, 190, 296
FatI	CATG	4 cut(s)	123, 147, 186, 292
Fnu4HI	GCNGC	4 cut(s)	131, 359, 637, 897
FokI	GGATG	6 cut(s)	28, 103, 394, 473, 617, 836
FriOI	GRGCYC	1 cut(s)	866
Fsp4HI	GCNGC	4 cut(s)	131, 359, 637, 897
FspBI	CTAG	4 cut(s)	347, 479, 593, 876
GlaI	GCGC	2 cut(s)	218, 769
GluI	GCNGC	4 cut(s)	131, 359, 637, 897
HaeIII	GGCC	2 cut(s)	91, 318
HapII	CCGG	2 cut(s)	315, 728
HgaI	GACGC	3 cut(s)	102, 223, 285
HhaI	GCGC	2 cut(s)	219, 770
Hin1II	CATG	4 cut(s)	127, 151, 190, 296
Hin6I	GCGC	2 cut(s)	217, 768
HinP1I	GCGC	2 cut(s)	217, 768
HindIII	AAGCTT	2 cut(s)	694, 927
HpaII	CCGG	2 cut(s)	315, 728
HphI	GGTGA	1 cut(s)	613
Hpy188I	TCNGA	2 cut(s)	311, 471
Hpy188III	TCNNGA	3 cut(s)	211, 586, 923
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	3 cut(s)	84, 245, 249
HpyCH4III	ACNGT	2 cut(s)	208, 365
HpyCH4IV	ACGT	2 cut(s)	162, 258
HpyCH4V	TGCA	4 cut(s)	361, 434, 734, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	3 cut(s)	597, 692, 697
HpySE526I	ACGT	2 cut(s)	162, 258
Hsp92II	CATG	4 cut(s)	127, 151, 190, 296
HspAI	GCGC	2 cut(s)	217, 768
Kzo9I	GATC	5 cut(s)	311, 456, 705, 856, 901
LmnI	GCTCC	5 cut(s)	107, 127, 252, 383, 914
Lsp1109I	GCAGC	3 cut(s)	345, 648, 883
LweI	GCATC	4 cut(s)	116, 421, 759, 883
MaeI	CTAG	4 cut(s)	347, 479, 593, 876
MaeII	ACGT	2 cut(s)	162, 258
MalI	GATC	5 cut(s)	313, 458, 707, 858, 903
MboI	GATC	5 cut(s)	311, 456, 705, 856, 901
MboII	GAAGA	6 cut(s)	4, 88, 293, 790, 826, 829
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	866
MluCI	AATT	3 cut(s)	439, 657, 868
MmeI	TCCRAC	2 cut(s)	494, 738
MseI	TTAA	1 cut(s)	834
MspI	CCGG	2 cut(s)	315, 728
MspR9I	CCNGG	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	491
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	5 cut(s)	311, 456, 705, 856, 901
NlaIII	CATG	4 cut(s)	127, 151, 190, 296
NlaIV	GGNNCC	2 cut(s)	129, 916
PaeR7I	CTCGAG	2 cut(s)	449, 584
PflMI	CCANNNNNTGG	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	489
PkrI	GCNGC	4 cut(s)	132, 360, 638, 898
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	2 cut(s)	129, 916
PspPI	GGNCC	2 cut(s)	725, 887
PspXI	VCTCGAGB	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	901
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
Rsr2I	CGGWCCG	1 cut(s)	725
RsrII	CGGWCCG	1 cut(s)	725
SaqAI	TTAA	1 cut(s)	834
SatI	GCNGC	4 cut(s)	131, 359, 637, 897
Sau3AI	GATC	5 cut(s)	311, 456, 705, 856, 901
Sau96I	GGNCC	2 cut(s)	725, 887
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	866
SfaNI	GCATC	4 cut(s)	116, 421, 759, 883
SfcI	CTRYAG	1 cut(s)	897
Sfr274I	CTCGAG	2 cut(s)	449, 584
SinI	GGWCC	2 cut(s)	725, 887
SlaI	CTCGAG	2 cut(s)	449, 584
SmlI	CTYRAG	2 cut(s)	449, 584
SmoI	CTYRAG	2 cut(s)	449, 584
SpeI	ACTAGT	1 cut(s)	478
Sse9I	AATT	3 cut(s)	439, 657, 868
SsiI	CCGC	7 cut(s)	16, 63, 105, 131, 282, 634, 654
SspMI	CTAG	4 cut(s)	347, 479, 593, 876
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	3 cut(s)	86, 123, 572
TaaI	ACNGT	2 cut(s)	208, 365
TaiI	ACGT	2 cut(s)	165, 261
TaqI	TCGA	6 cut(s)	210, 450, 505, 585, 866, 904
TaqII	GACCGA	1 cut(s)	713
TasI	AATT	3 cut(s)	439, 657, 868
TauI	GCSGC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	834
Tru9I	TTAA	1 cut(s)	834
TscAI	CASTG	1 cut(s)	368
TseI	GCWGC	3 cut(s)	358, 636, 896
TspDTI	ATGAA	4 cut(s)	136, 182, 331, 396
TspRI	CASTG	1 cut(s)	368
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	725, 887
XapI	RAATTY	1 cut(s)	868
XhoI	CTCGAG	2 cut(s)	449, 584
XspI	CTAG	4 cut(s)	347, 479, 593, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.