Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Reverse (-)

38449582 .. 38451038

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029417

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCTGTCCTCTTCCGCCACATTTTCCAGTCTCCACCACCAGCCTCCTCCTCCTCCGCTTCTCTACCTTCAACCAAACCAAGGCCATTCTTCTGCTCCGCATCAGCGTCATCCTCCATGGAGTCGCACGCAACAAAGTTCATGGAGTTCCCCTACGTCTCAACCCCTCACAAGAACCTCATGGTTCATCTTGTATCCACCGTCGAGACGCGCCTCGCCTCCCACCTCCTTCCTTCAACTCTCCCACCAGACGTACAATACTACCAGAACGACACCGCCACTAACCACGCGTCTCTTCACATCAGATCCGGCCTCCCCTCCTCCCCTATTGATTTCATACTAGGAAGTTGGCTGCACTGTCAGCTACCAACAGGTGGAGCATTGAACATTACAAGTTTTTCATCCTATCTCAACCCATCAACAGATGCACCCAATTTCCTACTCGAGTTGATCCAAAGCAGTCCGACTTCACTAGTCCTCATCCTCGACTTGCCTCCTCGAAAAGACCTTGTTCTCCACCCAGACTACCTCAAAACATTTTATGAGGATACAAAGCTGGACACCCCAAGGCAAAAGCTCGAGAAACTTGCTGAGGTGAAACCTTACTTCTCCTCATCGCTTTACATCCGCAGTGTTGTGTCTCCTACCGCAATTTTGGTTCGTGTAGAAGCAGTAGAGGGAGGGCTAAGCTTAGAGGAGATCACACAGAACCATATCGGTCCGGTTGCAAAGGAAGTGTTGGGCATCTGGTTGGAACAATGCGCTCTTGGGAAGAGAGAAGTAGGGGAGAATGAGAAAGCTGAACTGAAGAAGAGGGATGATTTGGTTAAGAGAAAGACTATTGAGATTGATCTGGGCTCGAATTTTCCTAGATTGTTTGGACCTGATGCTGCAGATCGAGTATTGGGAGCCATTCGTGAAGCTTATAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

312

Amino Acids

34.41

Weight (kDa)

6.56

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	56 - 307	4.7e-120	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccII	CGCG	2 cut(s)	211, 290
AciI	CCGC	6 cut(s)	16, 57, 99, 276, 628, 648
AclWI	GGATC	2 cut(s)	300, 445
AcsI	RAATTY	1 cut(s)	862
AcuI	CTGAAG	1 cut(s)	827
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	81, 374
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	72, 237, 385
AhlI	ACTAGT	1 cut(s)	472
AluBI	AGCT	6 cut(s)	364, 556, 577, 690, 800, 923
AluI	AGCT	6 cut(s)	364, 556, 577, 690, 800, 923
Alw26I	GTCTC	5 cut(s)	36, 163, 200, 297, 645
AlwI	GGATC	2 cut(s)	300, 445
Ama87I	CYCGRG	2 cut(s)	443, 578
AoxI	GGCC	2 cut(s)	83, 310
ApeKI	GCWGC	2 cut(s)	352, 890
ApoI	RAATTY	1 cut(s)	862
AspLEI	GCGC	2 cut(s)	213, 764
AspS9I	GGNCC	2 cut(s)	719, 881
AsuHPI	GGTGA	1 cut(s)	607
AvaI	CYCGRG	2 cut(s)	443, 578
AvaII	GGWCC	2 cut(s)	719, 881
BanII	GRGCYC	1 cut(s)	860
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	339, 877
BccI	CCATC	1 cut(s)	424
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciVI	GTATCC	2 cut(s)	205, 541
BcoDI	GTCTC	5 cut(s)	36, 163, 200, 297, 645
BcuI	ACTAGT	1 cut(s)	472
BfaI	CTAG	3 cut(s)	341, 473, 870
BfmI	CTRYAG	1 cut(s)	891
BfuI	GTATCC	2 cut(s)	205, 541
BisI	GCNGC	2 cut(s)	353, 891
BlpI	GCTNAGC	1 cut(s)	686
BlsI	GCNGC	2 cut(s)	354, 892
Bme18I	GGWCC	2 cut(s)	719, 881
BmeT110I	CYCGRG	2 cut(s)	443, 578
BmgT120I	GGNCC	2 cut(s)	719, 881
BmiI	GGNNCC	1 cut(s)	910
BmsI	GCATC	4 cut(s)	110, 415, 753, 877
Bpu10I	CCTNAGC	1 cut(s)	591
Bpu1102I	GCTNAGC	1 cut(s)	686
BsaJI	CCNNGG	3 cut(s)	80, 117, 566
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 374
Bse1I	ACTGG	1 cut(s)	28
BseDI	CCNNGG	3 cut(s)	80, 117, 566
BseGI	GGATG	5 cut(s)	110, 401, 480, 624, 823
BseLI	CCNNNNNNNGG	2 cut(s)	81, 374
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	7 cut(s)	37, 40, 43, 310, 486, 601, 710
BseXI	GCAGC	2 cut(s)	339, 877
BsgI	GTGCAG	1 cut(s)	338
Bsh1236I	CGCG	2 cut(s)	211, 290
BshFI	GGCC	2 cut(s)	85, 312
BsiHKCI	CYCGRG	2 cut(s)	443, 578
BsiSI	CCGG	2 cut(s)	309, 722
BslI	CCNNNNNNNGG	2 cut(s)	81, 374
BsmAI	GTCTC	5 cut(s)	36, 163, 200, 297, 645
BsmBI	CGTCTC	3 cut(s)	163, 200, 297
BsnI	GGCC	2 cut(s)	85, 312
BsoBI	CYCGRG	2 cut(s)	443, 578
Bsp1286I	GDGCHC	1 cut(s)	860
Bsp143I	GATC	5 cut(s)	305, 450, 699, 850, 895
Bsp1720I	GCTNAGC	1 cut(s)	686
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	6 cut(s)	16, 57, 99, 276, 628, 648
BspANI	GGCC	2 cut(s)	85, 312
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	2 cut(s)	211, 290
BspLI	GGNNCC	1 cut(s)	910
BspMAI	CTGCAG	1 cut(s)	895
BspPI	GGATC	2 cut(s)	300, 445
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	80, 117, 566
BssMI	GATC	5 cut(s)	305, 450, 699, 850, 895
BssT1I	CCWWGG	3 cut(s)	80, 117, 566
Bst4CI	ACNGT	2 cut(s)	202, 359
Bst6I	CTCTTC	4 cut(s)	17, 300, 767, 806
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	3 cut(s)	591, 686, 691
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	5 cut(s)	110, 401, 480, 624, 823
BstFNI	CGCG	2 cut(s)	211, 290
BstHHI	GCGC	2 cut(s)	213, 764
BstKTI	GATC	5 cut(s)	308, 453, 702, 853, 898
BstMAI	GTCTC	5 cut(s)	36, 163, 200, 297, 645
BstMBI	GATC	5 cut(s)	305, 450, 699, 850, 895
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	891
BstUI	CGCG	2 cut(s)	211, 290
BstV1I	GCAGC	2 cut(s)	339, 877
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuI	GTATCC	2 cut(s)	205, 541
BsuRI	GGCC	2 cut(s)	85, 312
BtgI	CCRYGG	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	600
BtsCI	GGATG	5 cut(s)	110, 401, 480, 624, 823
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	355, 637
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	2 cut(s)	213, 764
Cfr13I	GGNCC	2 cut(s)	719, 881
CpoI	CGGWCCG	1 cut(s)	719
CseI	GACGC	3 cut(s)	96, 217, 279
Csp6I	GTAC	1 cut(s)	254
CspI	CGGWCCG	1 cut(s)	719
CviAII	CATG	3 cut(s)	118, 142, 181
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	3 cut(s)	591, 686, 691
DpnI	GATC	5 cut(s)	307, 452, 701, 852, 897
DpnII	GATC	5 cut(s)	305, 450, 699, 850, 895
Eam1104I	CTCTTC	4 cut(s)	17, 300, 767, 806
EarI	CTCTTC	4 cut(s)	17, 300, 767, 806
EciI	GGCGGA	1 cut(s)	5
Eco130I	CCWWGG	3 cut(s)	80, 117, 566
Eco24I	GRGCYC	1 cut(s)	860
Eco47I	GGWCC	2 cut(s)	719, 881
Eco57I	CTGAAG	1 cut(s)	827
Eco88I	CYCGRG	2 cut(s)	443, 578
EcoT14I	CCWWGG	3 cut(s)	80, 117, 566
EcoT38I	GRGCYC	1 cut(s)	860
ErhI	CCWWGG	3 cut(s)	80, 117, 566
Esp3I	CGTCTC	3 cut(s)	163, 200, 297
FaeI	CATG	3 cut(s)	121, 145, 184
FaiI	YATR	8 cut(s)	119, 143, 182, 338, 543, 714, 927, 934
FatI	CATG	3 cut(s)	117, 141, 180
Fnu4HI	GCNGC	2 cut(s)	353, 891
FokI	GGATG	5 cut(s)	97, 388, 467, 611, 830
FriOI	GRGCYC	1 cut(s)	860
Fsp4HI	GCNGC	2 cut(s)	353, 891
FspBI	CTAG	3 cut(s)	341, 473, 870
GlaI	GCGC	2 cut(s)	212, 763
GluI	GCNGC	2 cut(s)	353, 891
HaeIII	GGCC	2 cut(s)	85, 312
HapII	CCGG	2 cut(s)	309, 722
HgaI	GACGC	3 cut(s)	96, 217, 279
HhaI	GCGC	2 cut(s)	213, 764
Hin1II	CATG	3 cut(s)	121, 145, 184
Hin6I	GCGC	2 cut(s)	211, 762
HinP1I	GCGC	2 cut(s)	211, 762
HindIII	AAGCTT	2 cut(s)	688, 921
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	2 cut(s)	309, 722
HphI	GGTGA	1 cut(s)	607
Hpy188I	TCNGA	2 cut(s)	305, 465
Hpy188III	TCNNGA	3 cut(s)	205, 580, 917
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	78, 239, 243
HpyCH4III	ACNGT	2 cut(s)	202, 359
HpyCH4IV	ACGT	2 cut(s)	156, 252
HpyCH4V	TGCA	4 cut(s)	355, 428, 728, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	3 cut(s)	591, 686, 691
HpySE526I	ACGT	2 cut(s)	156, 252
Hsp92II	CATG	3 cut(s)	121, 145, 184
HspAI	GCGC	2 cut(s)	211, 762
Kzo9I	GATC	5 cut(s)	305, 450, 699, 850, 895
LmnI	GCTCC	3 cut(s)	101, 377, 908
Lsp1109I	GCAGC	2 cut(s)	339, 877
LweI	GCATC	4 cut(s)	110, 415, 753, 877
MaeI	CTAG	3 cut(s)	341, 473, 870
MaeII	ACGT	2 cut(s)	156, 252
MalI	GATC	5 cut(s)	307, 452, 701, 852, 897
MboI	GATC	5 cut(s)	305, 450, 699, 850, 895
MboII	GAAGA	6 cut(s)	4, 82, 287, 784, 820, 823
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	860
MluCI	AATT	3 cut(s)	433, 651, 862
MluI	ACGCGT	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	488, 732
MseI	TTAA	1 cut(s)	828
MspI	CCGG	2 cut(s)	309, 722
MvnI	CGCG	2 cut(s)	211, 290
MwoI	GCNNNNNNNGC	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	5 cut(s)	305, 450, 699, 850, 895
NlaIII	CATG	3 cut(s)	121, 145, 184
NlaIV	GGNNCC	1 cut(s)	910
PaeR7I	CTCGAG	2 cut(s)	443, 578
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	354, 892
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	910
PspPI	GGNCC	2 cut(s)	719, 881
PspXI	VCTCGAGB	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	895
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
Rsr2I	CGGWCCG	1 cut(s)	719
RsrII	CGGWCCG	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	828
SatI	GCNGC	2 cut(s)	353, 891
Sau3AI	GATC	5 cut(s)	305, 450, 699, 850, 895
Sau96I	GGNCC	2 cut(s)	719, 881
SchI	GAGTC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	860
SfaNI	GCATC	4 cut(s)	110, 415, 753, 877
SfcI	CTRYAG	1 cut(s)	891
Sfr274I	CTCGAG	2 cut(s)	443, 578
SinI	GGWCC	2 cut(s)	719, 881
SlaI	CTCGAG	2 cut(s)	443, 578
SmlI	CTYRAG	2 cut(s)	443, 578
SmoI	CTYRAG	2 cut(s)	443, 578
SpeI	ACTAGT	1 cut(s)	472
Sse9I	AATT	3 cut(s)	433, 651, 862
SsiI	CCGC	6 cut(s)	16, 57, 99, 276, 628, 648
SspMI	CTAG	3 cut(s)	341, 473, 870
StyI	CCWWGG	3 cut(s)	80, 117, 566
TaaI	ACNGT	2 cut(s)	202, 359
TaiI	ACGT	2 cut(s)	159, 255
TaqI	TCGA	7 cut(s)	204, 444, 486, 499, 579, 860, 898
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	3 cut(s)	433, 651, 862
Tru1I	TTAA	1 cut(s)	828
Tru9I	TTAA	1 cut(s)	828
TscAI	CASTG	2 cut(s)	362, 637
TseI	GCWGC	2 cut(s)	352, 890
TspDTI	ATGAA	4 cut(s)	130, 176, 325, 390
TspRI	CASTG	2 cut(s)	362, 637
Van91I	CCANNNNNTGG	1 cut(s)	374
VpaK11BI	GGWCC	2 cut(s)	719, 881
XapI	RAATTY	1 cut(s)	862
XhoI	CTCGAG	2 cut(s)	443, 578
XspI	CTAG	3 cut(s)	341, 473, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.