Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000574.1

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Forward (+)

69700 .. 70173

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000574.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgtttcagattgatttcatactaggaagttggttgcactgtcagctaccaacaggtggagcattgaacattacaagtttttcatcctatctcaacccatcaacagatgcacctaatttcctactcgagttgatccaaagcagtccgacttcactagtcctcatcctcgacttgcctcctcgaaaagaccttgttctccacccagactacctcaaaacattttatgaggatacaaagctggacaccccaaggcaaaagctcgagaaactagctgaggtgaaaccttacttctcctcgtcgctttacatccgcagcgttgtgtctccaaccgcaattttggttcgtgtagaagcagtagagggagggctaagcttagaggagatcatagagaaccatatcggtccggttgcaaaggaagtgttgggcatctggttggaacaatgctcttgggaagagagaagtaagggagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

157

Amino Acids

17.65

Weight (kDa)

4.87

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	56
AciI	CCGC	2 cut(s)	310, 330
AclWI	GGATC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	67
AhlI	ACTAGT	1 cut(s)	154
AluBI	AGCT	5 cut(s)	46, 238, 259, 272, 372
AluI	AGCT	5 cut(s)	46, 238, 259, 272, 372
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	127
Ama87I	CYCGRG	2 cut(s)	125, 260
ApeKI	GCWGC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	2 cut(s)	125, 260
AvaII	GGWCC	1 cut(s)	401
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	1 cut(s)	106
BciVI	GTATCC	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	327
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	3 cut(s)	23, 155, 269
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	313
BlpI	GCTNAGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	2 cut(s)	125, 260
BmgT120I	GGNCC	1 cut(s)	401
BmsI	GCATC	2 cut(s)	97, 435
Bpu10I	CCTNAGC	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	3 cut(s)	83, 162, 306
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	3 cut(s)	168, 283, 392
BseXI	GCAGC	1 cut(s)	324
BsiHKCI	CYCGRG	2 cut(s)	125, 260
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	327
BsoBI	CYCGRG	2 cut(s)	125, 260
Bsp143I	GATC	2 cut(s)	132, 381
Bsp1720I	GCTNAGC	1 cut(s)	368
BspACI	CCGC	2 cut(s)	310, 330
BspCNI	CTCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	2 cut(s)	132, 381
BssT1I	CCWWGG	1 cut(s)	248
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	447
BstDEI	CTNAG	3 cut(s)	273, 368, 373
BstF5I	GGATG	3 cut(s)	83, 162, 306
BstKTI	GATC	2 cut(s)	135, 384
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	2 cut(s)	132, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	83, 162, 306
BtsIMutI	CAGTG	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	401
CpoI	CGGWCCG	1 cut(s)	401
CspI	CGGWCCG	1 cut(s)	401
CviJI	RGCY	6 cut(s)	46, 238, 259, 272, 367, 372
CviKI_1	RGCY	6 cut(s)	46, 238, 259, 272, 367, 372
DdeI	CTNAG	3 cut(s)	273, 368, 373
DpnI	GATC	2 cut(s)	134, 383
DpnII	GATC	2 cut(s)	132, 381
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	401
Eco88I	CYCGRG	2 cut(s)	125, 260
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaiI	YATR	4 cut(s)	20, 225, 386, 396
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	3 cut(s)	70, 149, 293
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	3 cut(s)	23, 155, 269
GluI	GCNGC	1 cut(s)	313
HapII	CCGG	1 cut(s)	404
HindIII	AAGCTT	1 cut(s)	370
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	9, 147
Hpy188III	TCNNGA	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	37, 110, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	3 cut(s)	273, 368, 373
Kzo9I	GATC	2 cut(s)	132, 381
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	5 cut(s)	39, 216, 224, 415, 417
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	2 cut(s)	97, 435
MaeI	CTAG	3 cut(s)	23, 155, 269
MalI	GATC	2 cut(s)	134, 383
MboI	GATC	2 cut(s)	132, 381
MboII	GAAGA	1 cut(s)	464
MluCI	AATT	2 cut(s)	115, 333
MmeI	TCCRAC	3 cut(s)	170, 350, 414
MspI	CCGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeII	GATC	2 cut(s)	132, 381
PaeR7I	CTCGAG	2 cut(s)	125, 260
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	401
PspXI	VCTCGAGB	1 cut(s)	125
Rsr2I	CGGWCCG	1 cut(s)	401
RsrII	CGGWCCG	1 cut(s)	401
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	2 cut(s)	132, 381
Sau96I	GGNCC	1 cut(s)	401
SfaNI	GCATC	2 cut(s)	97, 435
Sfr274I	CTCGAG	2 cut(s)	125, 260
SinI	GGWCC	1 cut(s)	401
SlaI	CTCGAG	2 cut(s)	125, 260
SmlI	CTYRAG	2 cut(s)	125, 260
SmoI	CTYRAG	2 cut(s)	125, 260
SpeI	ACTAGT	1 cut(s)	154
Sse9I	AATT	2 cut(s)	115, 333
SsiI	CCGC	2 cut(s)	310, 330
SspMI	CTAG	3 cut(s)	23, 155, 269
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	4 cut(s)	126, 168, 181, 261
TaqII	GACCGA	1 cut(s)	389
TasI	AATT	2 cut(s)	115, 333
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	1 cut(s)	312
TspDTI	ATGAA	2 cut(s)	7, 72
TspRI	CASTG	1 cut(s)	44
Van91I	CCANNNNNTGG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	401
XhoI	CTCGAG	2 cut(s)	125, 260
XspI	CTAG	3 cut(s)	23, 155, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.