Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Forward (+)

20549564 .. 20550007

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0117100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCGGTGCATCTCCAGGAACTTCGGAAATGTGTCCTATAAATCAGATTTCTATAGTTATGGAATGGTACTGCTTGAGATGGTAGGAGGGAGAAAGAATATTGGTTCAACCACAGAGAACAGCAACGAAGTTTACTACCCAGAACGGATCTATAATCATCTAGAAGGAGATGACCTAACTACCCATATGGCTGAAGAAGGAGGTACTAAAATTGCAAAGACACTTGCAATTGTAGGTCTCTGGTGCATCCAATGGCACCGTGTAGATCAGCCTTCTATGCAAGGGGTGGTTCACATGTTGGAAGGAGGAGAAAATCTAACCATGCCTTCAAATCCTTTTGCCTGTCAAGGTCCAGCAGGAACAAGTACAAGTACACTTCCGAGAAACTTAAACGTCCAACTAGAAGTAATTTTTGAGCTAGAACAGATTAATGGGAGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

147

Amino Acids

16.35

Weight (kDa)

5.11

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	4 cut(s)	69, 205, 367, 373
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	108, 330
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	155
AseI	ATTAAT	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	255
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	3 cut(s)	161, 401, 419
BfmI	CTRYAG	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	2 cut(s)	18, 255
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	242
Bso31I	GGTCTC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	147, 265
BspACI	CCGC	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	242
BssMI	GATC	2 cut(s)	147, 265
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	2 cut(s)	150, 268
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	2 cut(s)	147, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	4 cut(s)	68, 204, 366, 372
CviAII	CATG	2 cut(s)	295, 322
CviJI	RGCY	3 cut(s)	191, 271, 418
CviKI_1	RGCY	3 cut(s)	191, 271, 418
CviQI	GTAC	4 cut(s)	68, 204, 366, 372
DpnI	GATC	2 cut(s)	149, 267
DpnII	GATC	2 cut(s)	147, 265
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	14
FaeI	CATG	2 cut(s)	298, 325
FatI	CATG	2 cut(s)	294, 321
FauNDI	CATATG	1 cut(s)	186
FokI	GGATG	1 cut(s)	233
FspBI	CTAG	3 cut(s)	161, 401, 419
Hin1II	CATG	2 cut(s)	298, 325
Hpy166II	GTNNAC	3 cut(s)	133, 292, 374
Hpy188I	TCNGA	3 cut(s)	26, 46, 381
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	3 cut(s)	133, 292, 374
HpyAV	CCTTC	5 cut(s)	158, 191, 282, 296, 336
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	5 cut(s)	9, 215, 227, 246, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	298, 325
Kzo9I	GATC	2 cut(s)	147, 265
LpnPI	CCDG	6 cut(s)	28, 153, 226, 342, 355, 366
LweI	GCATC	2 cut(s)	18, 255
MaeI	CTAG	3 cut(s)	161, 401, 419
MaeII	ACGT	1 cut(s)	393
MalI	GATC	2 cut(s)	149, 267
MboI	GATC	2 cut(s)	147, 265
MboII	GAAGA	1 cut(s)	206
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	3 cut(s)	210, 228, 408
MmeI	TCCRAC	2 cut(s)	279, 421
MnlI	CCTC	3 cut(s)	80, 194, 299
MseI	TTAA	2 cut(s)	389, 429
MspR9I	CCNGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeI	CATATG	1 cut(s)	186
NdeII	GATC	2 cut(s)	147, 265
NlaIII	CATG	2 cut(s)	298, 325
NlaIV	GGNNCC	1 cut(s)	257
NspI	RCATGY	1 cut(s)	298
PciI	ACATGT	1 cut(s)	294
PfoI	TCCNGGA	1 cut(s)	14
PscI	ACATGT	1 cut(s)	294
PshBI	ATTAAT	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	4 cut(s)	69, 205, 367, 373
RsaNI	GTAC	4 cut(s)	68, 204, 366, 372
SaqAI	TTAA	2 cut(s)	389, 429
Sau3AI	GATC	2 cut(s)	147, 265
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	16
SetI	ASST	6 cut(s)	177, 205, 238, 352, 396, 420
SfaNI	GCATC	2 cut(s)	18, 255
SfcI	CTRYAG	1 cut(s)	52
SinI	GGWCC	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	3 cut(s)	210, 228, 408
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	3 cut(s)	161, 401, 419
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	396
TasI	AATT	3 cut(s)	210, 228, 408
TatI	WGTACW	2 cut(s)	365, 371
Tru1I	TTAA	2 cut(s)	389, 429
Tru9I	TTAA	2 cut(s)	389, 429
TspGWI	ACGGA	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	350
VspI	ATTAAT	1 cut(s)	429
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	3 cut(s)	161, 401, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.