Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Reverse (-)

24164754 .. 24166210

Gene Structure 1457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTGTCCTCTTCCGCCACATTTTCCAGTCTCCACCACCATCCTCCTCCTCCTCCTCCGCTTCTCTACCTTCATCCAAACTAAGGCCATTCTTCTGCTCCGCATCAGCATCATCCTCCATGGAGCAGCACCCAACAAAGTTCATGGAGTTCCCCTACGTCTCAACCCCTCACAAGAACCTCATGGTTCATCTTGTATCCACCGTCGAGACGCGCCTCGCCTCCCACCTCCTTCCTTCAACTCTCCCACCAGACGTACAACACTACCAGAATGACACCGCCACTAACCACGCGTCTCTTCACATCAGATCCGGCCTCCCCTCCTCCCCTATTGATTTTATACTAGGAAGTTGGCTGCACTGTCAGCTACCAACAGGTGGAGCACTGAACATTACAAGTTTTTCATCCTATCTCAACCCATCAACAGATGCTCCAAATTTCCTACTCGAATTGATCCAAAGCAGTCCGACTTCACTAGTCCTCATCCTGGACTTGCCTCCTCGAAAAGACCTTGTTCTCCACCCAGACTACCTCAAAACATTTTATGAGGATACAAAGCTGGACACCCCAAGGCAAAAGCTCGAGAAACTAGCTGAGGTGAAACCATACTTCTCCTCATCGCTTTACATCCGCAGCGTTGTGTCGCCTACCGCAATTTTGGTTCGTGTAGAAGCAGTAGAGGGAGGGCTAAGCTTAGAGGAGATCATAGAGAACCATATCGGTCCCGTTGCAAAGGAAGTGTTGGGCATCTGGTTGGAACAATGCACTCTTGGGAAGAGAGAAGTAGGGGAGAATGAGAAAGCTGAACTGAAGAAGAGGGATGATTTGGTTAAGAGAAAGACTATAGAGATTGATCTGGGCTCGAATTTTCCTAGATTGTTTGGACCTGATGCTGCAGATCGAGTATTGGGAGCCATTCGTGAAGCTTATAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

312

Amino Acids

34.6

Weight (kDa)

6.42

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	57 - 308	4.8e-120	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccII	CGCG	2 cut(s)	214, 293
AciI	CCGC	6 cut(s)	16, 60, 102, 279, 631, 651
AclWI	GGATC	2 cut(s)	303, 448
AcsI	RAATTY	2 cut(s)	436, 865
AcuI	CTGAAG	1 cut(s)	830
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	3 cut(s)	84, 377, 487
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	240
AhlI	ACTAGT	1 cut(s)	475
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	7 cut(s)	367, 559, 580, 593, 693, 803, 926
AluI	AGCT	7 cut(s)	367, 559, 580, 593, 693, 803, 926
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	4 cut(s)	36, 166, 203, 300
AlwI	GGATC	2 cut(s)	303, 448
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	2 cut(s)	86, 313
ApeKI	GCWGC	4 cut(s)	127, 355, 633, 893
ApoI	RAATTY	2 cut(s)	436, 865
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	722, 884
AsuHPI	GGTGA	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	2 cut(s)	722, 884
BanII	GRGCYC	1 cut(s)	863
Bbv12I	GWGCWC	1 cut(s)	385
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	4 cut(s)	139, 342, 645, 880
BccI	CCATC	2 cut(s)	49, 427
BciT130I	CCWGG	1 cut(s)	488
BciVI	GTATCC	2 cut(s)	208, 544
BcoDI	GTCTC	4 cut(s)	36, 166, 203, 300
BcuI	ACTAGT	1 cut(s)	475
BfaI	CTAG	4 cut(s)	344, 476, 590, 873
BfmI	CTRYAG	2 cut(s)	843, 894
BfuI	GTATCC	2 cut(s)	208, 544
BisI	GCNGC	4 cut(s)	128, 356, 634, 894
BlpI	GCTNAGC	1 cut(s)	689
BlsI	GCNGC	4 cut(s)	129, 357, 635, 895
Bme1390I	CCNGG	1 cut(s)	488
Bme18I	GGWCC	2 cut(s)	722, 884
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	2 cut(s)	722, 884
BmiI	GGNNCC	2 cut(s)	724, 913
BmrFI	CCNGG	1 cut(s)	488
BmsI	GCATC	5 cut(s)	113, 119, 418, 756, 880
Bpu10I	CCTNAGC	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	689
BsaJI	CCNNGG	2 cut(s)	120, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 377, 487
Bse1I	ACTGG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	120, 569
BseGI	GGATG	7 cut(s)	41, 74, 113, 404, 483, 627, 826
BseLI	CCNNNNNNNGG	3 cut(s)	84, 377, 487
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	8 cut(s)	37, 40, 43, 46, 313, 489, 604, 713
BseXI	GCAGC	4 cut(s)	139, 342, 645, 880
BsgI	GTGCAG	1 cut(s)	341
Bsh1236I	CGCG	2 cut(s)	214, 293
BshFI	GGCC	2 cut(s)	88, 315
BsiHKAI	GWGCWC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	3 cut(s)	84, 377, 487
BsmAI	GTCTC	4 cut(s)	36, 166, 203, 300
BsmBI	CGTCTC	3 cut(s)	166, 203, 300
BsmFI	GGGAC	1 cut(s)	708
BsnI	GGCC	2 cut(s)	88, 315
BsoBI	CYCGRG	1 cut(s)	581
Bsp1286I	GDGCHC	2 cut(s)	385, 863
Bsp143I	GATC	5 cut(s)	308, 453, 702, 853, 898
Bsp1720I	GCTNAGC	1 cut(s)	689
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	6 cut(s)	16, 60, 102, 279, 631, 651
BspANI	GGCC	2 cut(s)	88, 315
BspCNI	CTCAG	1 cut(s)	586
BspFNI	CGCG	2 cut(s)	214, 293
BspLI	GGNNCC	2 cut(s)	724, 913
BspMAI	CTGCAG	1 cut(s)	898
BspPI	GGATC	2 cut(s)	303, 448
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	120, 569
BssMI	GATC	5 cut(s)	308, 453, 702, 853, 898
BssT1I	CCWWGG	2 cut(s)	120, 569
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	2 cut(s)	205, 362
Bst6I	CTCTTC	4 cut(s)	17, 303, 770, 809
BstDEI	CTNAG	4 cut(s)	83, 594, 689, 694
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	7 cut(s)	41, 74, 113, 404, 483, 627, 826
BstFNI	CGCG	2 cut(s)	214, 293
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	5 cut(s)	311, 456, 705, 856, 901
BstMAI	GTCTC	4 cut(s)	36, 166, 203, 300
BstMBI	GATC	5 cut(s)	308, 453, 702, 853, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNI	CCWGG	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	486
BstSFI	CTRYAG	2 cut(s)	843, 894
BstUI	CGCG	2 cut(s)	214, 293
BstV1I	GCAGC	4 cut(s)	139, 342, 645, 880
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuI	GTATCC	2 cut(s)	208, 544
BsuRI	GGCC	2 cut(s)	88, 315
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	7 cut(s)	41, 74, 113, 404, 483, 627, 826
BtsIMutI	CAGTG	2 cut(s)	358, 383
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	2 cut(s)	722, 884
CseI	GACGC	2 cut(s)	220, 282
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	3 cut(s)	121, 145, 184
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	4 cut(s)	83, 594, 689, 694
DpnI	GATC	5 cut(s)	310, 455, 704, 855, 900
DpnII	GATC	5 cut(s)	308, 453, 702, 853, 898
Eam1104I	CTCTTC	4 cut(s)	17, 303, 770, 809
EarI	CTCTTC	4 cut(s)	17, 303, 770, 809
EciI	GGCGGA	1 cut(s)	5
Eco130I	CCWWGG	2 cut(s)	120, 569
Eco24I	GRGCYC	1 cut(s)	863
Eco47I	GGWCC	2 cut(s)	722, 884
Eco57I	CTGAAG	1 cut(s)	830
Eco88I	CYCGRG	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	2 cut(s)	120, 569
EcoT38I	GRGCYC	1 cut(s)	863
ErhI	CCWWGG	2 cut(s)	120, 569
Esp3I	CGTCTC	3 cut(s)	166, 203, 300
FaeI	CATG	3 cut(s)	124, 148, 187
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	3 cut(s)	120, 144, 183
Fnu4HI	GCNGC	4 cut(s)	128, 356, 634, 894
FokI	GGATG	7 cut(s)	28, 61, 100, 391, 470, 614, 833
FriOI	GRGCYC	1 cut(s)	863
Fsp4HI	GCNGC	4 cut(s)	128, 356, 634, 894
FspBI	CTAG	4 cut(s)	344, 476, 590, 873
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	4 cut(s)	128, 356, 634, 894
HaeIII	GGCC	2 cut(s)	88, 315
HapII	CCGG	1 cut(s)	312
HgaI	GACGC	2 cut(s)	220, 282
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	124, 148, 187
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HindIII	AAGCTT	2 cut(s)	691, 924
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	610
Hpy188I	TCNGA	2 cut(s)	308, 468
Hpy188III	TCNNGA	3 cut(s)	208, 583, 920
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	81, 242, 246
HpyCH4III	ACNGT	2 cut(s)	205, 362
HpyCH4IV	ACGT	2 cut(s)	159, 255
HpyCH4V	TGCA	4 cut(s)	358, 731, 765, 896
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	4 cut(s)	83, 594, 689, 694
HpySE526I	ACGT	2 cut(s)	159, 255
Hsp92II	CATG	3 cut(s)	124, 148, 187
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	308, 453, 702, 853, 898
LmnI	GCTCC	5 cut(s)	104, 124, 380, 436, 911
Lsp1109I	GCAGC	4 cut(s)	139, 342, 645, 880
LweI	GCATC	5 cut(s)	113, 119, 418, 756, 880
MaeI	CTAG	4 cut(s)	344, 476, 590, 873
MaeII	ACGT	2 cut(s)	159, 255
MalI	GATC	5 cut(s)	310, 455, 704, 855, 900
MboI	GATC	5 cut(s)	308, 453, 702, 853, 898
MboII	GAAGA	6 cut(s)	4, 85, 290, 787, 823, 826
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	2 cut(s)	385, 863
MluCI	AATT	4 cut(s)	436, 449, 654, 865
MluI	ACGCGT	1 cut(s)	291
MmeI	TCCRAC	2 cut(s)	491, 735
MseI	TTAA	1 cut(s)	831
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	488
MvaI	CCWGG	1 cut(s)	488
MvnI	CGCG	2 cut(s)	214, 293
MwoI	GCNNNNNNNGC	1 cut(s)	364
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	5 cut(s)	308, 453, 702, 853, 898
NlaIII	CATG	3 cut(s)	124, 148, 187
NlaIV	GGNNCC	2 cut(s)	724, 913
PaeR7I	CTCGAG	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	377
PfoI	TCCNGGA	1 cut(s)	486
PkrI	GCNGC	4 cut(s)	129, 357, 635, 895
Psp6I	CCWGG	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	724, 913
PspPI	GGNCC	2 cut(s)	722, 884
PstI	CTGCAG	1 cut(s)	898
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	831
SatI	GCNGC	4 cut(s)	128, 356, 634, 894
Sau3AI	GATC	5 cut(s)	308, 453, 702, 853, 898
Sau96I	GGNCC	2 cut(s)	722, 884
ScrFI	CCNGG	1 cut(s)	488
SduI	GDGCHC	2 cut(s)	385, 863
SfaNI	GCATC	5 cut(s)	113, 119, 418, 756, 880
SfcI	CTRYAG	2 cut(s)	843, 894
Sfr274I	CTCGAG	1 cut(s)	581
SinI	GGWCC	2 cut(s)	722, 884
SlaI	CTCGAG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
SpeI	ACTAGT	1 cut(s)	475
Sse9I	AATT	4 cut(s)	436, 449, 654, 865
SsiI	CCGC	6 cut(s)	16, 60, 102, 279, 631, 651
SspMI	CTAG	4 cut(s)	344, 476, 590, 873
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	2 cut(s)	120, 569
TaaI	ACNGT	2 cut(s)	205, 362
TaiI	ACGT	2 cut(s)	162, 258
TaqI	TCGA	6 cut(s)	207, 447, 502, 582, 863, 901
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	4 cut(s)	436, 449, 654, 865
Tru1I	TTAA	1 cut(s)	831
Tru9I	TTAA	1 cut(s)	831
TscAI	CASTG	2 cut(s)	365, 390
TseI	GCWGC	4 cut(s)	127, 355, 633, 893
TspDTI	ATGAA	4 cut(s)	63, 133, 179, 393
TspRI	CASTG	2 cut(s)	365, 390
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	722, 884
XapI	RAATTY	2 cut(s)	436, 865
XhoI	CTCGAG	1 cut(s)	581
XspI	CTAG	4 cut(s)	344, 476, 590, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.