Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Reverse (-)

6508903 .. 6510270

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTGTTCTCTTCCGCCACATTTTCCAGTCTCCACCGTCAGCTCTGCCTTCTTCAAGGCCACTCTTCCTCTGCTCCTCCTCATCAGCATCGTCCTCCATGGACCCGCACCCATCAAAGTTCATGGAGTTTCCCTACGTCTCAACTCCCCACAAGAACCTCATGGTTCATCTTGTGTCCACTGTCGAGACCCGCCTCGCCTCCCATCTCCTCCCTTCCACTCTCCCACCCGACGTCCAATACTACCACAACGACACCTCCACTAACCATGCAGCTCTTCACATCCGATCCGCCCTCCCCTCCTCCCCTATTGATTTCATACTAGGAAGTTGGATTCACTGTCAGCTACCAACAGGTGGAGCATTGAACATTACAAGCTTTTCATCCTATCTCAACCCATCAACAGATGCACCCAATTTCCTACTCGAGTTGATCCAAAGCAGTCCCACTTCACTAGTCCTCATCCTCGACTTGCCTCCTCGAAAAGACCTTGTTCTCCACCCGGACTACCTCAAAACGTTTTATGAGGACACGAAGCTGGACACCTCAAGGCAGAAGCTCGAGAAACTAGCTGAGGTGAAGCCTTACTTCTCCTCATCGCTCTACATCCGCAGCGTCGTGTCTCCTACCGCAATTTTGGTCCGTGTAGATGCAGTAGAGGGAGGGCTAAGCTTAGAGGAGATCATAGAGAACCATGTCGGTCCGGTTGCAGAGGAAGTGTTGGGCATTTGGTTGGAACAATGCGCGTTTGGCAAGAGAGAAGTAGGGGAGAATGAGAGAGCTGAACTAAAGAAGAGGGATGATTTGGTCAAGAAAAAGACTATTGAGATTGATTTGGGATCGAATTTTCCTAGATTGTTTGGACCTGATGCTGCAGATCGAGTATTGGGAGCAATTCGTCAAGCTTATAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

306

Amino Acids

33.87

Weight (kDa)

6.12

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	50 - 300	9.6e-120	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
AccB7I	CCANNNNNTGG	1 cut(s)	356
AccII	CGCG	1 cut(s)	746
AciI	CCGC	6 cut(s)	16, 107, 193, 291, 610, 630
AclI	AACGTT	1 cut(s)	518
AclWI	GGATC	3 cut(s)	282, 427, 847
AcsI	RAATTY	1 cut(s)	844
AcyI	GRCGYC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	57, 367
AhlI	ACTAGT	1 cut(s)	454
Alw26I	GTCTC	4 cut(s)	36, 145, 182, 627
AlwI	GGATC	3 cut(s)	282, 427, 847
Ama87I	CYCGRG	2 cut(s)	425, 560
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	272, 612, 872
ApoI	RAATTY	1 cut(s)	844
AspLEI	GCGC	1 cut(s)	746
AspS9I	GGNCC	4 cut(s)	103, 640, 701, 863
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	589
AvaI	CYCGRG	2 cut(s)	425, 560
AvaII	GGWCC	4 cut(s)	103, 640, 701, 863
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	284, 624, 859
BccI	CCATC	3 cut(s)	121, 213, 406
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	4 cut(s)	36, 145, 182, 627
BcuI	ACTAGT	1 cut(s)	454
BfaI	CTAG	4 cut(s)	323, 455, 569, 852
BfmI	CTRYAG	1 cut(s)	873
BisI	GCNGC	3 cut(s)	273, 613, 873
BlpI	GCTNAGC	1 cut(s)	668
BlsI	GCNGC	3 cut(s)	274, 614, 874
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	4 cut(s)	103, 640, 701, 863
BmeT110I	CYCGRG	2 cut(s)	425, 560
BmgT120I	GGNCC	4 cut(s)	103, 640, 701, 863
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	4 cut(s)	98, 397, 640, 859
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	532
BpuMI	CCSGG	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	703
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	5 cut(s)	282, 383, 462, 606, 805
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	7 cut(s)	67, 70, 200, 292, 468, 583, 692
BseXI	GCAGC	3 cut(s)	284, 624, 859
Bsh1236I	CGCG	1 cut(s)	746
BshFI	GGCC	1 cut(s)	61
BsiHKCI	CYCGRG	2 cut(s)	425, 560
BsiSI	CCGG	2 cut(s)	503, 704
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	4 cut(s)	36, 145, 182, 627
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	61
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	2 cut(s)	425, 560
Bsp143I	GATC	5 cut(s)	287, 432, 681, 839, 877
Bsp1720I	GCTNAGC	1 cut(s)	668
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	6 cut(s)	16, 107, 193, 291, 610, 630
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	565
BspFNI	CGCG	1 cut(s)	746
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	877
BspPI	GGATC	3 cut(s)	282, 427, 847
BspQI	GCTCTTC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	5 cut(s)	287, 432, 681, 839, 877
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	3 cut(s)	39, 184, 341
Bst6I	CTCTTC	4 cut(s)	17, 71, 282, 788
BstACI	GRCGYC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	573, 668, 673
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	5 cut(s)	282, 383, 462, 606, 805
BstFNI	CGCG	1 cut(s)	746
BstHHI	GCGC	1 cut(s)	746
BstKTI	GATC	5 cut(s)	290, 435, 684, 842, 880
BstMAI	GTCTC	4 cut(s)	36, 145, 182, 627
BstMBI	GATC	5 cut(s)	287, 432, 681, 839, 877
BstMWI	GCNNNNNNNGC	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	873
BstUI	CGCG	1 cut(s)	746
BstV1I	GCAGC	3 cut(s)	284, 624, 859
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	582
BtsCI	GGATG	5 cut(s)	282, 383, 462, 606, 805
BtsIMutI	CAGTG	2 cut(s)	180, 337
CfoI	GCGC	1 cut(s)	746
Cfr13I	GGNCC	4 cut(s)	103, 640, 701, 863
CpoI	CGGWCCG	1 cut(s)	701
CseI	GACGC	1 cut(s)	604
CspI	CGGWCCG	1 cut(s)	701
CviAII	CATG	5 cut(s)	100, 124, 163, 269, 695
DdeI	CTNAG	3 cut(s)	573, 668, 673
DpnI	GATC	5 cut(s)	289, 434, 683, 841, 879
DpnII	GATC	5 cut(s)	287, 432, 681, 839, 877
Eam1104I	CTCTTC	4 cut(s)	17, 71, 282, 788
EarI	CTCTTC	4 cut(s)	17, 71, 282, 788
EciI	GGCGGA	2 cut(s)	5, 280
Eco130I	CCWWGG	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	4 cut(s)	103, 640, 701, 863
Eco88I	CYCGRG	2 cut(s)	425, 560
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	5 cut(s)	103, 127, 166, 272, 698
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	5 cut(s)	99, 123, 162, 268, 694
FauI	CCCGC	2 cut(s)	114, 200
Fnu4HI	GCNGC	3 cut(s)	273, 613, 873
FokI	GGATG	5 cut(s)	269, 370, 449, 593, 812
Fsp4HI	GCNGC	3 cut(s)	273, 613, 873
FspBI	CTAG	4 cut(s)	323, 455, 569, 852
GlaI	GCGC	1 cut(s)	745
GluI	GCNGC	3 cut(s)	273, 613, 873
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	2 cut(s)	503, 704
HgaI	GACGC	1 cut(s)	604
HhaI	GCGC	1 cut(s)	746
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	5 cut(s)	103, 127, 166, 272, 698
Hin6I	GCGC	1 cut(s)	744
HinP1I	GCGC	1 cut(s)	744
HindIII	AAGCTT	3 cut(s)	376, 670, 903
HinfI	GANTC	1 cut(s)	334
HpaII	CCGG	2 cut(s)	503, 704
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	3 cut(s)	187, 562, 811
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	2 cut(s)	236, 620
HpyAV	CCTTC	2 cut(s)	60, 225
HpyCH4III	ACNGT	3 cut(s)	39, 184, 341
HpyCH4IV	ACGT	3 cut(s)	138, 234, 518
HpyCH4V	TGCA	5 cut(s)	272, 410, 653, 710, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	750
HpyF3I	CTNAG	3 cut(s)	573, 668, 673
HpySE526I	ACGT	3 cut(s)	138, 234, 518
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	5 cut(s)	103, 127, 166, 272, 698
HspAI	GCGC	1 cut(s)	744
Kzo9I	GATC	5 cut(s)	287, 432, 681, 839, 877
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	3 cut(s)	80, 359, 890
LpnPI	CCDG	6 cut(s)	41, 339, 516, 524, 717, 879
Lsp1109I	GCAGC	3 cut(s)	284, 624, 859
LweI	GCATC	4 cut(s)	98, 397, 640, 859
MaeI	CTAG	4 cut(s)	323, 455, 569, 852
MaeII	ACGT	3 cut(s)	138, 234, 518
MalI	GATC	5 cut(s)	289, 434, 683, 841, 879
MboI	GATC	5 cut(s)	287, 432, 681, 839, 877
MboII	GAAGA	5 cut(s)	4, 45, 58, 269, 805
MluCI	AATT	4 cut(s)	415, 633, 844, 894
MmeI	TCCRAC	2 cut(s)	311, 714
MspI	CCGG	2 cut(s)	503, 704
MspR9I	CCNGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	746
MwoI	GCNNNNNNNGC	1 cut(s)	750
NciI	CCSGG	1 cut(s)	503
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	5 cut(s)	287, 432, 681, 839, 877
NlaIII	CATG	5 cut(s)	103, 127, 166, 272, 698
NlaIV	GGNNCC	1 cut(s)	105
PaeR7I	CTCGAG	2 cut(s)	425, 560
PciSI	GCTCTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	3 cut(s)	274, 614, 874
Psp1406I	AACGTT	1 cut(s)	518
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	4 cut(s)	103, 640, 701, 863
PspXI	VCTCGAGB	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	877
Rsr2I	CGGWCCG	1 cut(s)	701
RsrII	CGGWCCG	1 cut(s)	701
SapI	GCTCTTC	1 cut(s)	282
SatI	GCNGC	3 cut(s)	273, 613, 873
Sau3AI	GATC	5 cut(s)	287, 432, 681, 839, 877
Sau96I	GGNCC	4 cut(s)	103, 640, 701, 863
ScrFI	CCNGG	1 cut(s)	503
SfaNI	GCATC	4 cut(s)	98, 397, 640, 859
SfcI	CTRYAG	1 cut(s)	873
Sfr274I	CTCGAG	2 cut(s)	425, 560
SinI	GGWCC	4 cut(s)	103, 640, 701, 863
SlaI	CTCGAG	2 cut(s)	425, 560
SmlI	CTYRAG	3 cut(s)	425, 547, 560
SmoI	CTYRAG	3 cut(s)	425, 547, 560
SpeI	ACTAGT	1 cut(s)	454
Sse9I	AATT	4 cut(s)	415, 633, 844, 894
SsiI	CCGC	6 cut(s)	16, 107, 193, 291, 610, 630
SspMI	CTAG	4 cut(s)	323, 455, 569, 852
StyD4I	CCNGG	1 cut(s)	501
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	39, 184, 341
TaiI	ACGT	3 cut(s)	141, 237, 521
TaqI	TCGA	7 cut(s)	186, 426, 468, 481, 561, 842, 880
TaqII	GACCGA	1 cut(s)	689
TasI	AATT	4 cut(s)	415, 633, 844, 894
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	2 cut(s)	187, 344
TseI	GCWGC	3 cut(s)	272, 612, 872
TspDTI	ATGAA	4 cut(s)	112, 158, 307, 372
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	2 cut(s)	187, 344
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	4 cut(s)	103, 640, 701, 863
XapI	RAATTY	1 cut(s)	844
XhoI	CTCGAG	2 cut(s)	425, 560
XspI	CTAG	4 cut(s)	323, 455, 569, 852
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.