Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Forward (+)

26674821 .. 26676166

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG141000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAGCCGCACCCAACAAAGTTCATGGAGTTCCCCTACGTCTCAACCCCTCACAAGAACCTCATGGTCCATCTTGTATCCACCGTCGAGACGCGCCTCGCCTCCCACCTCCTTCCTTCAACTCTCCCACCAGACGTACAATACTACCAGAACGACACCGCCACTAACCATGCGTCTCTTCACATCAGATCCGGCCTCCCCTCCTCCCCTATTGATTTCATACTAGGAAGTTGGCTGCACTGTCAGCTACCAACAGGTGGAGCATTGAACATTACAAGTTTTTCATCCTATCTCAACCCATCAACAGATGCACCTAATTTCCTACTCGAGTTGATCCAAAGCAGTCCGACTTCACTAGTCCTCATCCTCGACTTGCCTCCTCGAAAAGACCTTGTTCTCCACCCAGACTACCTCAAAACATTTTATGAGGATACAAAGCTGGACACCCCAAGGCAAAAGCTCGAGAAACTAACTGAGGTGAAACCTTACTTCTCCTCATCGCTTTACATCCGCAGCGTTGTGTCGCCTACCGCAATTTTGGTTCGTGTAGAAGCAGTAGAGGGAGGGCTAAGCTTAGAGGAGATCATAGAGAACCATATCGGTCCGGTTGCAAAGGAAGTGTTGGGCATCTGGTTGGAACAATGCGCTCTTGGGAAGAGAGAAGTAGGGGAGAATGAGAAAGCTGAACTGAAGAAGAGGGATGATTTGGTTAAGAGAAAGACTATTGAGATTGATCTGGGCTCGAATTTTCCTAGATTGTTTGGATCTGATGCTGCAGATCGAGTATTGGGAGCCATTCGTGAAGCTTATAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

272

Amino Acids

30.43

Weight (kDa)

5.86

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	17 - 268	1.5e-120	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccII	CGCG	1 cut(s)	94
AciI	CCGC	4 cut(s)	8, 159, 511, 531
AclWI	GGATC	3 cut(s)	183, 328, 772
AcsI	RAATTY	1 cut(s)	745
AcuI	CTGAAG	1 cut(s)	710
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	2 cut(s)	120, 268
AhlI	ACTAGT	1 cut(s)	355
AluBI	AGCT	6 cut(s)	247, 439, 460, 573, 683, 806
AluI	AGCT	6 cut(s)	247, 439, 460, 573, 683, 806
Alw26I	GTCTC	3 cut(s)	46, 83, 180
AlwI	GGATC	3 cut(s)	183, 328, 772
Ama87I	CYCGRG	2 cut(s)	326, 461
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	3 cut(s)	235, 513, 773
ApoI	RAATTY	1 cut(s)	745
AspLEI	GCGC	2 cut(s)	96, 647
AspS9I	GGNCC	2 cut(s)	67, 602
AsuHPI	GGTGA	1 cut(s)	490
AvaI	CYCGRG	2 cut(s)	326, 461
AvaII	GGWCC	2 cut(s)	67, 602
BanII	GRGCYC	1 cut(s)	743
BbvI	GCAGC	3 cut(s)	222, 525, 760
BccI	CCATC	2 cut(s)	78, 307
BciVI	GTATCC	2 cut(s)	88, 424
BcoDI	GTCTC	3 cut(s)	46, 83, 180
BcuI	ACTAGT	1 cut(s)	355
BfaI	CTAG	3 cut(s)	224, 356, 753
BfmI	CTRYAG	1 cut(s)	774
BfuI	GTATCC	2 cut(s)	88, 424
BisI	GCNGC	4 cut(s)	8, 236, 514, 774
BlpI	GCTNAGC	1 cut(s)	569
BlsI	GCNGC	4 cut(s)	9, 237, 515, 775
Bme18I	GGWCC	2 cut(s)	67, 602
BmeT110I	CYCGRG	2 cut(s)	326, 461
BmgT120I	GGNCC	2 cut(s)	67, 602
BmiI	GGNNCC	2 cut(s)	6, 793
BmsI	GCATC	3 cut(s)	298, 636, 760
Bpu1102I	GCTNAGC	1 cut(s)	569
BsaJI	CCNNGG	1 cut(s)	449
BsaWI	WCCGGW	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	4 cut(s)	284, 363, 507, 706
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	465
BseRI	GAGGAG	4 cut(s)	193, 369, 484, 593
BseXI	GCAGC	3 cut(s)	222, 525, 760
BsgI	GTGCAG	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	195
BsiHKCI	CYCGRG	2 cut(s)	326, 461
BsiSI	CCGG	2 cut(s)	192, 605
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	3 cut(s)	46, 83, 180
BsmBI	CGTCTC	3 cut(s)	46, 83, 180
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	2 cut(s)	326, 461
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp143I	GATC	6 cut(s)	188, 333, 582, 733, 764, 778
Bsp1720I	GCTNAGC	1 cut(s)	569
BspACI	CCGC	4 cut(s)	8, 159, 511, 531
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	6, 793
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	3 cut(s)	183, 328, 772
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	6 cut(s)	188, 333, 582, 733, 764, 778
BssT1I	CCWWGG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	85, 242
Bst6I	CTCTTC	3 cut(s)	183, 650, 689
BstDEI	CTNAG	3 cut(s)	474, 569, 574
BstF5I	GGATG	4 cut(s)	284, 363, 507, 706
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	96, 647
BstKTI	GATC	6 cut(s)	191, 336, 585, 736, 767, 781
BstMAI	GTCTC	3 cut(s)	46, 83, 180
BstMBI	GATC	6 cut(s)	188, 333, 582, 733, 764, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	3 cut(s)	222, 525, 760
BstX2I	RGATCY	2 cut(s)	188, 764
BstYI	RGATCY	2 cut(s)	188, 764
BsuI	GTATCC	2 cut(s)	88, 424
BsuRI	GGCC	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	4 cut(s)	284, 363, 507, 706
BtsIMutI	CAGTG	1 cut(s)	238
CfoI	GCGC	2 cut(s)	96, 647
Cfr13I	GGNCC	2 cut(s)	67, 602
CpoI	CGGWCCG	1 cut(s)	602
CseI	GACGC	2 cut(s)	100, 162
Csp6I	GTAC	1 cut(s)	137
CspI	CGGWCCG	1 cut(s)	602
CviAII	CATG	3 cut(s)	25, 64, 170
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	3 cut(s)	474, 569, 574
DpnI	GATC	6 cut(s)	190, 335, 584, 735, 766, 780
DpnII	GATC	6 cut(s)	188, 333, 582, 733, 764, 778
Eam1104I	CTCTTC	3 cut(s)	183, 650, 689
EarI	CTCTTC	3 cut(s)	183, 650, 689
Eco130I	CCWWGG	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	743
Eco47I	GGWCC	2 cut(s)	67, 602
Eco57I	CTGAAG	1 cut(s)	710
Eco88I	CYCGRG	2 cut(s)	326, 461
EcoT14I	CCWWGG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	743
ErhI	CCWWGG	1 cut(s)	449
Esp3I	CGTCTC	3 cut(s)	46, 83, 180
FaeI	CATG	3 cut(s)	28, 67, 173
FaiI	YATR	9 cut(s)	26, 65, 171, 221, 426, 587, 597, 810, 817
FatI	CATG	3 cut(s)	24, 63, 169
Fnu4HI	GCNGC	4 cut(s)	8, 236, 514, 774
FokI	GGATG	4 cut(s)	271, 350, 494, 713
FriOI	GRGCYC	1 cut(s)	743
Fsp4HI	GCNGC	4 cut(s)	8, 236, 514, 774
FspBI	CTAG	3 cut(s)	224, 356, 753
GlaI	GCGC	2 cut(s)	95, 646
GluI	GCNGC	4 cut(s)	8, 236, 514, 774
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	2 cut(s)	192, 605
HgaI	GACGC	2 cut(s)	100, 162
HhaI	GCGC	2 cut(s)	96, 647
Hin1II	CATG	3 cut(s)	28, 67, 173
Hin6I	GCGC	2 cut(s)	94, 645
HinP1I	GCGC	2 cut(s)	94, 645
HindIII	AAGCTT	2 cut(s)	571, 804
HpaII	CCGG	2 cut(s)	192, 605
HphI	GGTGA	1 cut(s)	490
Hpy188I	TCNGA	3 cut(s)	188, 348, 769
Hpy188III	TCNNGA	3 cut(s)	88, 463, 800
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	122, 126
HpyCH4III	ACNGT	2 cut(s)	85, 242
HpyCH4IV	ACGT	2 cut(s)	39, 135
HpyCH4V	TGCA	4 cut(s)	238, 311, 611, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	3 cut(s)	474, 569, 574
HpySE526I	ACGT	2 cut(s)	39, 135
Hsp92II	CATG	3 cut(s)	28, 67, 173
HspAI	GCGC	2 cut(s)	94, 645
Kzo9I	GATC	6 cut(s)	188, 333, 582, 733, 764, 778
LmnI	GCTCC	3 cut(s)	4, 260, 791
LpnPI	CCDG	9 cut(s)	144, 161, 205, 240, 417, 425, 616, 618, 722
Lsp1109I	GCAGC	3 cut(s)	222, 525, 760
LweI	GCATC	3 cut(s)	298, 636, 760
MaeI	CTAG	3 cut(s)	224, 356, 753
MaeII	ACGT	2 cut(s)	39, 135
MalI	GATC	6 cut(s)	190, 335, 584, 735, 766, 780
MboI	GATC	6 cut(s)	188, 333, 582, 733, 764, 778
MboII	GAAGA	4 cut(s)	170, 667, 703, 706
MflI	RGATCY	2 cut(s)	188, 764
MhlI	GDGCHC	1 cut(s)	743
MluCI	AATT	3 cut(s)	316, 534, 745
MmeI	TCCRAC	2 cut(s)	371, 615
MseI	TTAA	1 cut(s)	711
MspI	CCGG	2 cut(s)	192, 605
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeII	GATC	6 cut(s)	188, 333, 582, 733, 764, 778
NlaIII	CATG	3 cut(s)	28, 67, 173
NlaIV	GGNNCC	2 cut(s)	6, 793
PaeR7I	CTCGAG	2 cut(s)	326, 461
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	4 cut(s)	9, 237, 515, 775
PspN4I	GGNNCC	2 cut(s)	6, 793
PspPI	GGNCC	2 cut(s)	67, 602
PspXI	VCTCGAGB	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	2 cut(s)	188, 764
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
Rsr2I	CGGWCCG	1 cut(s)	602
RsrII	CGGWCCG	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	711
SatI	GCNGC	4 cut(s)	8, 236, 514, 774
Sau3AI	GATC	6 cut(s)	188, 333, 582, 733, 764, 778
Sau96I	GGNCC	2 cut(s)	67, 602
SduI	GDGCHC	1 cut(s)	743
SfaNI	GCATC	3 cut(s)	298, 636, 760
SfcI	CTRYAG	1 cut(s)	774
Sfr274I	CTCGAG	2 cut(s)	326, 461
SinI	GGWCC	2 cut(s)	67, 602
SlaI	CTCGAG	2 cut(s)	326, 461
SmlI	CTYRAG	2 cut(s)	326, 461
SmoI	CTYRAG	2 cut(s)	326, 461
SpeI	ACTAGT	1 cut(s)	355
Sse9I	AATT	3 cut(s)	316, 534, 745
SsiI	CCGC	4 cut(s)	8, 159, 511, 531
SspMI	CTAG	3 cut(s)	224, 356, 753
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	2 cut(s)	85, 242
TaiI	ACGT	2 cut(s)	42, 138
TaqI	TCGA	7 cut(s)	87, 327, 369, 382, 462, 743, 781
TaqII	GACCGA	1 cut(s)	590
TasI	AATT	3 cut(s)	316, 534, 745
TauI	GCSGC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TscAI	CASTG	1 cut(s)	245
TseI	GCWGC	3 cut(s)	235, 513, 773
TspDTI	ATGAA	3 cut(s)	13, 208, 273
TspRI	CASTG	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	67, 602
XapI	RAATTY	1 cut(s)	745
XhoI	CTCGAG	2 cut(s)	326, 461
XspI	CTAG	3 cut(s)	224, 356, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.