Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010202

Physical Location & Seq

Genomic Coordinates Reverse (-)

41238384 .. 41239966

Gene Structure 1583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTGTCCTCTTCCGCCACATTTTCCAATCTCTACCAACACCAGCCTCCTCCTCCTCCGCTTCTCTACCTTCATCCAAACTAAGGCCATTCTTCTGCTCCGCATCAGCATCATCCTCCATGGAGCCGCACCCAACAAAGTTCATGGAGTTCCCCTACGTCTCAACCCCTCACAAGAACCTCATGGTTCATCTTGTATCCACCGTTGAGACGCGCCTCGCCTCCCACCTCCTTCCTTCAACTCTCCCACAAGACGTACAATACTACCAGAACGACACCGCCACTAACCATGCGTCTCTTCACATCAGATCCGGCCTCCCCTCCTCCCCTATTGATTTCATACTAGGAAGTTGGCTGCACTGTCAGCTACCAACAGGTGGAGCATTGAACATTACAAGTTTTTCATCCTATCTCAACCCATCAACAGATGCACCGAATTTCCTACTCGAGTTGATCCAAAGCAGTCCGACTTCACTAGTCCTCATCCTCGACTTGCCTCCTCGAAAAGACCTTGTTCTCCACCCAGACTACCTCAAAACATTTTATGAGGACACAAGGCTGGACACGCCAAGGCTAAAGCTCGAGAAACTAGCTGAGGTGAAACCTTACTTCTCCTCATCGCTTTACATCCGCAGTGTTGTGTCTCCTACTGCAATTTTGGTTCGTGTAGAAGCAGTAGAGGGAGGGCTAAGCTTAGAGGAGATCATAGAGAACCATATCGGTCCAGTTGCAAAGGAAGTGTTGGGCATCTGGTTGGAACAATGCGCTCTTGGGAAGAGAGAAGTAGGGGAGAATGAGAAAGCTGAACTGAAGAAGAGGGATGATTTGGTTAAGAGAAAGACTATTGAGATTGATCTGGGCTCGAATTTTCCTAGATTGTTTGGACCTGATGCTGCAGATCGAGTATTGGGAGCCATTCGTGAAGCTTATAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009814 GO:0009941 GO:0009987 GO:0010363 GO:0010941 GO:0015994 GO:0015996 GO:0016020 GO:0016491 GO:0016627 GO:0016636 GO:0019439 GO:0031347 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043067 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0046149 GO:0046483 GO:0046700 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0051743 GO:0055035 GO:0055114 GO:0065007 GO:0071704 GO:0080134 GO:0080135 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

RCC_reductase

Protein Analysis

312

Amino Acids

34.62

Weight (kDa)

6.37

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	57 - 308	6.4e-119	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37000
fragaria_vesca	FvH4_7g06480
malus_domestica	MD15G1283600.v1.1
prunus_persica	Prupe.7G133700_v2.0.a1
pyrus_communis	pycom15g24660
rosa_chinensis	RchiOBHm_Chr1g0334851
rosa_laevigata	RLG00000029417
rosa_multiflora	Rmu_sc0000574.1_g000027 Rmu_sc0000574.1_g000042 Rmu_sc0006031.1_g000002
rosa_roxburghii	Rroxscaffold_4G00316400
rosa_rugosa	Rorug01G0116600.1 Rorug01G0117100
rosa_samantha	Rh1AG141000 Rh1BG108400 Rh1CG132900 Rh1DG145300
rosa_wichuraiana	Rw1G010710 Rw1G010770 Rw1G011630 Rw1G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccII	CGCG	1 cut(s)	214
AciI	CCGC	6 cut(s)	16, 60, 102, 128, 279, 631
AclWI	GGATC	2 cut(s)	303, 448
AcsI	RAATTY	2 cut(s)	436, 865
AcuI	CTGAAG	1 cut(s)	830
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	84, 377
AgsI	TTSAA	2 cut(s)	240, 388
AhlI	ACTAGT	1 cut(s)	475
AluBI	AGCT	6 cut(s)	367, 580, 593, 693, 803, 926
AluI	AGCT	6 cut(s)	367, 580, 593, 693, 803, 926
Alw26I	GTCTC	4 cut(s)	166, 203, 300, 648
AlwI	GGATC	2 cut(s)	303, 448
Ama87I	CYCGRG	2 cut(s)	446, 581
AoxI	GGCC	2 cut(s)	86, 313
ApeKI	GCWGC	2 cut(s)	355, 893
ApoI	RAATTY	2 cut(s)	436, 865
AspLEI	GCGC	2 cut(s)	216, 767
AspS9I	GGNCC	2 cut(s)	722, 884
AsuHPI	GGTGA	1 cut(s)	610
AvaI	CYCGRG	2 cut(s)	446, 581
AvaII	GGWCC	2 cut(s)	722, 884
BanII	GRGCYC	1 cut(s)	863
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	342, 880
BccI	CCATC	1 cut(s)	427
BciVI	GTATCC	1 cut(s)	208
BcoDI	GTCTC	4 cut(s)	166, 203, 300, 648
BcuI	ACTAGT	1 cut(s)	475
BfaI	CTAG	4 cut(s)	344, 476, 590, 873
BfmI	CTRYAG	1 cut(s)	894
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	3 cut(s)	128, 356, 894
BlpI	GCTNAGC	1 cut(s)	689
BlsI	GCNGC	3 cut(s)	129, 357, 895
Bme18I	GGWCC	2 cut(s)	722, 884
BmeT110I	CYCGRG	2 cut(s)	446, 581
BmgT120I	GGNCC	2 cut(s)	722, 884
BmiI	GGNNCC	2 cut(s)	126, 913
BmsI	GCATC	5 cut(s)	113, 119, 418, 756, 880
Bpu10I	CCTNAGC	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	689
BsaJI	CCNNGG	2 cut(s)	120, 569
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 377
Bse1I	ACTGG	1 cut(s)	725
BseDI	CCNNGG	2 cut(s)	120, 569
BseGI	GGATG	6 cut(s)	74, 113, 404, 483, 627, 826
BseLI	CCNNNNNNNGG	2 cut(s)	84, 377
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	725
BseRI	GAGGAG	7 cut(s)	40, 43, 46, 313, 489, 604, 713
BseXI	GCAGC	2 cut(s)	342, 880
BsgI	GTGCAG	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	88, 315
BsiHKCI	CYCGRG	2 cut(s)	446, 581
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	2 cut(s)	84, 377
BsmAI	GTCTC	4 cut(s)	166, 203, 300, 648
BsmBI	CGTCTC	3 cut(s)	166, 203, 300
BsnI	GGCC	2 cut(s)	88, 315
BsoBI	CYCGRG	2 cut(s)	446, 581
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp143I	GATC	5 cut(s)	308, 453, 702, 853, 898
Bsp1720I	GCTNAGC	1 cut(s)	689
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	6 cut(s)	16, 60, 102, 128, 279, 631
BspANI	GGCC	2 cut(s)	88, 315
BspCNI	CTCAG	1 cut(s)	586
BspFNI	CGCG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	126, 913
BspMAI	CTGCAG	1 cut(s)	898
BspPI	GGATC	2 cut(s)	303, 448
BsrI	ACTGG	1 cut(s)	725
BssECI	CCNNGG	2 cut(s)	120, 569
BssMI	GATC	5 cut(s)	308, 453, 702, 853, 898
BssT1I	CCWWGG	2 cut(s)	120, 569
Bst4CI	ACNGT	2 cut(s)	205, 362
Bst6I	CTCTTC	4 cut(s)	17, 303, 770, 809
BstDEI	CTNAG	4 cut(s)	83, 594, 689, 694
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	6 cut(s)	74, 113, 404, 483, 627, 826
BstFNI	CGCG	1 cut(s)	214
BstHHI	GCGC	2 cut(s)	216, 767
BstKTI	GATC	5 cut(s)	311, 456, 705, 856, 901
BstMAI	GTCTC	4 cut(s)	166, 203, 300, 648
BstMBI	GATC	5 cut(s)	308, 453, 702, 853, 898
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 565
BstSFI	CTRYAG	1 cut(s)	894
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	342, 880
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	88, 315
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	6 cut(s)	74, 113, 404, 483, 627, 826
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	2 cut(s)	358, 640
CfoI	GCGC	2 cut(s)	216, 767
Cfr13I	GGNCC	2 cut(s)	722, 884
CseI	GACGC	2 cut(s)	220, 282
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	4 cut(s)	121, 145, 184, 290
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	4 cut(s)	83, 594, 689, 694
DpnI	GATC	5 cut(s)	310, 455, 704, 855, 900
DpnII	GATC	5 cut(s)	308, 453, 702, 853, 898
Eam1104I	CTCTTC	4 cut(s)	17, 303, 770, 809
EarI	CTCTTC	4 cut(s)	17, 303, 770, 809
EciI	GGCGGA	1 cut(s)	5
Eco130I	CCWWGG	2 cut(s)	120, 569
Eco24I	GRGCYC	1 cut(s)	863
Eco47I	GGWCC	2 cut(s)	722, 884
Eco57I	CTGAAG	1 cut(s)	830
Eco88I	CYCGRG	2 cut(s)	446, 581
EcoT14I	CCWWGG	2 cut(s)	120, 569
EcoT38I	GRGCYC	1 cut(s)	863
ErhI	CCWWGG	2 cut(s)	120, 569
Esp3I	CGTCTC	3 cut(s)	166, 203, 300
FaeI	CATG	4 cut(s)	124, 148, 187, 293
FatI	CATG	4 cut(s)	120, 144, 183, 289
Fnu4HI	GCNGC	3 cut(s)	128, 356, 894
FokI	GGATG	6 cut(s)	61, 100, 391, 470, 614, 833
FriOI	GRGCYC	1 cut(s)	863
Fsp4HI	GCNGC	3 cut(s)	128, 356, 894
FspBI	CTAG	4 cut(s)	344, 476, 590, 873
GlaI	GCGC	2 cut(s)	215, 766
GluI	GCNGC	3 cut(s)	128, 356, 894
HaeIII	GGCC	2 cut(s)	88, 315
HapII	CCGG	1 cut(s)	312
HgaI	GACGC	2 cut(s)	220, 282
HhaI	GCGC	2 cut(s)	216, 767
Hin1II	CATG	4 cut(s)	124, 148, 187, 293
Hin6I	GCGC	2 cut(s)	214, 765
HinP1I	GCGC	2 cut(s)	214, 765
HindIII	AAGCTT	2 cut(s)	691, 924
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	610
Hpy188I	TCNGA	2 cut(s)	308, 468
Hpy188III	TCNNGA	2 cut(s)	583, 920
HpyAV	CCTTC	3 cut(s)	81, 242, 246
HpyCH4III	ACNGT	2 cut(s)	205, 362
HpyCH4IV	ACGT	2 cut(s)	159, 255
HpyCH4V	TGCA	5 cut(s)	358, 431, 653, 731, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 565
HpyF3I	CTNAG	4 cut(s)	83, 594, 689, 694
HpySE526I	ACGT	2 cut(s)	159, 255
Hsp92II	CATG	4 cut(s)	124, 148, 187, 293
HspAI	GCGC	2 cut(s)	214, 765
Kzo9I	GATC	5 cut(s)	308, 453, 702, 853, 898
LmnI	GCTCC	4 cut(s)	104, 124, 380, 911
Lsp1109I	GCAGC	2 cut(s)	342, 880
LweI	GCATC	5 cut(s)	113, 119, 418, 756, 880
MaeI	CTAG	4 cut(s)	344, 476, 590, 873
MaeII	ACGT	2 cut(s)	159, 255
MalI	GATC	5 cut(s)	310, 455, 704, 855, 900
MboI	GATC	5 cut(s)	308, 453, 702, 853, 898
MboII	GAAGA	6 cut(s)	4, 85, 290, 787, 823, 826
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	863
MluCI	AATT	3 cut(s)	436, 654, 865
MmeI	TCCRAC	2 cut(s)	491, 735
MseI	TTAA	1 cut(s)	831
MspI	CCGG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	364, 565
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	5 cut(s)	308, 453, 702, 853, 898
NlaIII	CATG	4 cut(s)	124, 148, 187, 293
NlaIV	GGNNCC	2 cut(s)	126, 913
PaeR7I	CTCGAG	2 cut(s)	446, 581
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	129, 357, 895
PspN4I	GGNNCC	2 cut(s)	126, 913
PspPI	GGNCC	2 cut(s)	722, 884
PspXI	VCTCGAGB	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	898
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	831
SatI	GCNGC	3 cut(s)	128, 356, 894
Sau3AI	GATC	5 cut(s)	308, 453, 702, 853, 898
Sau96I	GGNCC	2 cut(s)	722, 884
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	5 cut(s)	113, 119, 418, 756, 880
SfcI	CTRYAG	1 cut(s)	894
Sfr274I	CTCGAG	2 cut(s)	446, 581
SinI	GGWCC	2 cut(s)	722, 884
SlaI	CTCGAG	2 cut(s)	446, 581
SmlI	CTYRAG	2 cut(s)	446, 581
SmoI	CTYRAG	2 cut(s)	446, 581
SpeI	ACTAGT	1 cut(s)	475
Sse9I	AATT	3 cut(s)	436, 654, 865
SsiI	CCGC	6 cut(s)	16, 60, 102, 128, 279, 631
SspMI	CTAG	4 cut(s)	344, 476, 590, 873
StyI	CCWWGG	2 cut(s)	120, 569
TaaI	ACNGT	2 cut(s)	205, 362
TaiI	ACGT	2 cut(s)	162, 258
TaqI	TCGA	6 cut(s)	447, 489, 502, 582, 863, 901
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	3 cut(s)	436, 654, 865
TauI	GCSGC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	831
Tru9I	TTAA	1 cut(s)	831
TscAI	CASTG	2 cut(s)	365, 640
TseI	GCWGC	2 cut(s)	355, 893
TspDTI	ATGAA	5 cut(s)	63, 133, 179, 328, 393
TspRI	CASTG	2 cut(s)	365, 640
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	722, 884
XapI	RAATTY	2 cut(s)	436, 865
XhoI	CTCGAG	2 cut(s)	446, 581
XspI	CTAG	4 cut(s)	344, 476, 590, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.